Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03118 and RBAM_018920
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:59
# Commandline: needle
# -asequence dna-align/BSNT_03118.1.9828.seq
# -bsequence dna-align/RBAM_018920___yocB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03118-RBAM_018920___yocB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03118-RBAM_018920___yocB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03118
# 2: RBAM_018920___yocB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 812
# Identity: 295/812 (36.3%)
# Similarity: 295/812 (36.3%)
# Gaps: 427/812 (52.6%)
# Score: 985.0
#
#
#=======================================
BSNT_03118 0 -------------------------------------------------- 0
RBAM_018920__ 1 ATGGCAATTGACTCACTCATCGGCAAATTGAAGTACGTAATGACGGAATC 50
BSNT_03118 0 -------------------------------------------------- 0
RBAM_018920__ 51 TCCTGATAAAATGCTTTCCTTATATGTAAATACGGATATGAGAAATCCGG 100
BSNT_03118 0 -------------------------------------------------- 0
RBAM_018920__ 101 ATCAGCAGGGGGGAGAGTGGAAAATCGCCTTGAAAACCGGTTTTCGGAGA 150
BSNT_03118 0 -------------------------------------------------- 0
RBAM_018920__ 151 TTAAAAGAGTATCTGTCTGCCAGTGATCCGGAAGAAAAAAAATCTCTCGT 200
BSNT_03118 0 -------------------------------------------------- 0
RBAM_018920__ 201 CCGCATCATGGAACGTGTCTATCAATATATCGAGGGGCTTGGTAAAGAGA 250
BSNT_03118 0 -------------------------------------------------- 0
RBAM_018920__ 251 TGCCGCGAAGTCTTGTATTTTTTGCATCGGGAGAAGGCGGTATTTGGGAG 300
BSNT_03118 0 -------------------------------------------------- 0
RBAM_018920__ 301 ACGATTCAATTGCAGGTGCCTGTCGAAACACGATTTTATTGGGAGGAAGC 350
BSNT_03118 1 --------------------------TTGCGCCAGGCATACCCAAGTACA 24
|| ||..|...||..||.||.||.
RBAM_018920__ 351 GGCTGTCCTTGATCAATTAGAACTTCTT-CGTGAACAATTTCCGAGCACG 399
BSNT_03118 25 GCGTTTATTTTAACTCAGCAGCATGAAGTGAAAATTATTGAAACCGTATT 74
||.||||||.|.||.||||||.||||||||||.||.||.|||||||||.|
RBAM_018920__ 400 GCTTTTATTCTCACCCAGCAGAATGAAGTGAAGATCATAGAAACCGTACT 449
BSNT_03118 75 AGGAAAAATTGAGGCGGTGGAGCGTTATGAGTATGATATGATCAATGAGT 124
.|||||||||||.|.||||||||.||||.|.||.||..|.||||||||.|
RBAM_018920__ 450 CGGAAAAATTGAAGGGGTGGAGCATTATCATTACGACGTCATCAATGAAT 499
BSNT_03118 125 CTTGGA------AGAAT---------AGCCATTCCGC-----TGTAGACA 154
|.|||| ||.|| |||...||||| || |||.
RBAM_018920__ 500 CGTGGAAACCGCAGGATGTAAGCGGAAGCTCCTCCGCGTCGATG--GACG 547
BSNT_03118 155 AAG-CGCCACCATTTGAAGAGAACCGGATGAGGGAACATGTAACAGAGAA 203
||| |||..||| ||| || ||.||...|||.||
RBAM_018920__ 548 AAGACGCTGCCA----AAG----CC-----------CACGTCGAAGAAAA 578
BSNT_03118 204 CCAATCGAGACTGTATAAGCGGCTGGCTGCCAGCCTTGATCAAAAAGCTG 253
||||...||.||||||||.||..|||||.|.|.||||||||||||.||.|
RBAM_018920__ 579 CCAAAACAGGCTGTATAAACGATTGGCTTCAAACCTTGATCAAAAGGCCG 628
BSNT_03118 254 C----CGCGAAAAGATGGGAACGAATGGTTATCGCCGGGGATAAAGAAAC 299
| |.|.| ||||||.||..|.||.|||||.|||||.||||||||
RBAM_018920__ 629 CTTCACACCA----ATGGGAGCGTCTCGTAATCGCAGGGGACAAAGAAAC 674
BSNT_03118 300 GGCCGATATCTTGGATCAGCATATGAATAAACCCATTCATTCGAAAATTC 349
.||||||||..|.||||||||||||||||||||.||..||..||..||||
RBAM_018920__ 675 AGCCGATATTCTCGATCAGCATATGAATAAACCGATAGATCGGATCATTC 724
BSNT_03118 350 AAAAGAACCTGCTGAATGAAAATGAACATAAGGTCATTGAACATTTGATA 399
.|||.||.|||.||||||||||.|||||||||||.||.|||.|..||.|.
RBAM_018920__ 725 CAAAAAATCTGTTGAATGAAAACGAACATAAGGTGATAGAAGAACTGTTG 774
BSNT_03118 400 AAAGAGGCGTAA 411
||.||.||.|||
RBAM_018920__ 775 AAGGAAGCATAA 786
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