Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03118 and RBAM_018920

See Amino acid alignment / Visit BSNT_03118 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:59
# Commandline: needle
#    -asequence dna-align/BSNT_03118.1.9828.seq
#    -bsequence dna-align/RBAM_018920___yocB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03118-RBAM_018920___yocB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03118-RBAM_018920___yocB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03118
# 2: RBAM_018920___yocB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 812
# Identity:     295/812 (36.3%)
# Similarity:   295/812 (36.3%)
# Gaps:         427/812 (52.6%)
# Score: 985.0
# 
#
#=======================================

BSNT_03118         0 --------------------------------------------------      0
                                                                       
RBAM_018920__      1 ATGGCAATTGACTCACTCATCGGCAAATTGAAGTACGTAATGACGGAATC     50

BSNT_03118         0 --------------------------------------------------      0
                                                                       
RBAM_018920__     51 TCCTGATAAAATGCTTTCCTTATATGTAAATACGGATATGAGAAATCCGG    100

BSNT_03118         0 --------------------------------------------------      0
                                                                       
RBAM_018920__    101 ATCAGCAGGGGGGAGAGTGGAAAATCGCCTTGAAAACCGGTTTTCGGAGA    150

BSNT_03118         0 --------------------------------------------------      0
                                                                       
RBAM_018920__    151 TTAAAAGAGTATCTGTCTGCCAGTGATCCGGAAGAAAAAAAATCTCTCGT    200

BSNT_03118         0 --------------------------------------------------      0
                                                                       
RBAM_018920__    201 CCGCATCATGGAACGTGTCTATCAATATATCGAGGGGCTTGGTAAAGAGA    250

BSNT_03118         0 --------------------------------------------------      0
                                                                       
RBAM_018920__    251 TGCCGCGAAGTCTTGTATTTTTTGCATCGGGAGAAGGCGGTATTTGGGAG    300

BSNT_03118         0 --------------------------------------------------      0
                                                                       
RBAM_018920__    301 ACGATTCAATTGCAGGTGCCTGTCGAAACACGATTTTATTGGGAGGAAGC    350

BSNT_03118         1 --------------------------TTGCGCCAGGCATACCCAAGTACA     24
                                               || ||..|...||..||.||.||.
RBAM_018920__    351 GGCTGTCCTTGATCAATTAGAACTTCTT-CGTGAACAATTTCCGAGCACG    399

BSNT_03118        25 GCGTTTATTTTAACTCAGCAGCATGAAGTGAAAATTATTGAAACCGTATT     74
                     ||.||||||.|.||.||||||.||||||||||.||.||.|||||||||.|
RBAM_018920__    400 GCTTTTATTCTCACCCAGCAGAATGAAGTGAAGATCATAGAAACCGTACT    449

BSNT_03118        75 AGGAAAAATTGAGGCGGTGGAGCGTTATGAGTATGATATGATCAATGAGT    124
                     .|||||||||||.|.||||||||.||||.|.||.||..|.||||||||.|
RBAM_018920__    450 CGGAAAAATTGAAGGGGTGGAGCATTATCATTACGACGTCATCAATGAAT    499

BSNT_03118       125 CTTGGA------AGAAT---------AGCCATTCCGC-----TGTAGACA    154
                     |.||||      ||.||         |||...|||||     ||  |||.
RBAM_018920__    500 CGTGGAAACCGCAGGATGTAAGCGGAAGCTCCTCCGCGTCGATG--GACG    547

BSNT_03118       155 AAG-CGCCACCATTTGAAGAGAACCGGATGAGGGAACATGTAACAGAGAA    203
                     ||| |||..|||    |||    ||           ||.||...|||.||
RBAM_018920__    548 AAGACGCTGCCA----AAG----CC-----------CACGTCGAAGAAAA    578

BSNT_03118       204 CCAATCGAGACTGTATAAGCGGCTGGCTGCCAGCCTTGATCAAAAAGCTG    253
                     ||||...||.||||||||.||..|||||.|.|.||||||||||||.||.|
RBAM_018920__    579 CCAAAACAGGCTGTATAAACGATTGGCTTCAAACCTTGATCAAAAGGCCG    628

BSNT_03118       254 C----CGCGAAAAGATGGGAACGAATGGTTATCGCCGGGGATAAAGAAAC    299
                     |    |.|.|    ||||||.||..|.||.|||||.|||||.||||||||
RBAM_018920__    629 CTTCACACCA----ATGGGAGCGTCTCGTAATCGCAGGGGACAAAGAAAC    674

BSNT_03118       300 GGCCGATATCTTGGATCAGCATATGAATAAACCCATTCATTCGAAAATTC    349
                     .||||||||..|.||||||||||||||||||||.||..||..||..||||
RBAM_018920__    675 AGCCGATATTCTCGATCAGCATATGAATAAACCGATAGATCGGATCATTC    724

BSNT_03118       350 AAAAGAACCTGCTGAATGAAAATGAACATAAGGTCATTGAACATTTGATA    399
                     .|||.||.|||.||||||||||.|||||||||||.||.|||.|..||.|.
RBAM_018920__    725 CAAAAAATCTGTTGAATGAAAACGAACATAAGGTGATAGAAGAACTGTTG    774

BSNT_03118       400 AAAGAGGCGTAA    411
                     ||.||.||.|||
RBAM_018920__    775 AAGGAAGCATAA    786


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