Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03081 and RBAM_018740
See
Amino acid alignment /
Visit
BSNT_03081 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_03081___yoaB.1.9828.seq
# -bsequence dna-align/RBAM_018740___yoaB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03081___yoaB-RBAM_018740___yoaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03081___yoaB-RBAM_018740___yoaB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03081___yoaB
# 2: RBAM_018740___yoaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1257
# Identity: 903/1257 (71.8%)
# Similarity: 903/1257 (71.8%)
# Gaps: 105/1257 ( 8.4%)
# Score: 3375.0
#
#
#=======================================
BSNT_03081___ 1 ---GTGGATAAAATAGGAATACCGAAGCGGCTTGCCTGGGGATTTTTAGG 47
.|..|||||||||||||.|||||.|.|||.||.|||||||||||.||
RBAM_018740__ 1 ATGCTTAATAAAATAGGAATTCCGAAACAGCTCGCATGGGGATTTTTGGG 50
BSNT_03081___ 48 GGTTGTTTTGTTTATGATGGGAGATGGCCTTGAACAAGGATGGCTCAGTC 97
.||.||..|||||||||||||.||.||||||||||||||.||||||||.|
RBAM_018740__ 51 AGTCGTGCTGTTTATGATGGGGGACGGCCTTGAACAAGGCTGGCTCAGCC 100
BSNT_03081___ 98 CTTTTTTGATCGAAAACGGGCTCACCGTTCAGCAGTCCGCTTCTATTTTT 147
|.|||||..|.||||||||..|.||.||.|||||.||.||.||..|.|||
RBAM_018740__ 101 CGTTTTTAGTTGAAAACGGCTTGACGGTACAGCAATCAGCATCCCTGTTT 150
BSNT_03081___ 148 AGTATATACGGAATTGCGCTTGCCATAGCTTCCTGGTTTTCGGGTGTATG 197
|...|.|||||.|||.|.||.||..|.||.||.||||||||.||.||.||
RBAM_018740__ 151 ACGGTTTACGGTATTTCTCTCGCTGTGGCGTCTTGGTTTTCAGGGGTCTG 200
BSNT_03081___ 198 TCTCGAAGCATTTGGCGCAAAACGAACGATGTTTATGGGGCTGTTGTTTT 247
.||||||||.||.||||||||.||.|||||||||||||||||||||||||
RBAM_018740__ 201 CCTCGAAGCCTTCGGCGCAAAGCGGACGATGTTTATGGGGCTGTTGTTTT 250
BSNT_03081___ 248 ATGTGATCGGTACAGCTGCTTTTATCGTATTTGGATTTGAACAGCTGAAC 297
|.||.|||||.|||||.||.|||||||.||..|||||||||.|.||.||.
RBAM_018740__ 251 ACGTTATCGGAACAGCCGCGTTTATCGCATACGGATTTGAAAATCTTAAT 300
BSNT_03081___ 298 CTGCCAGTGATGTATGTGACTTACTTCGTAAAAGGGTTAGGTTACCCGCT 347
.||.|.|||||||||||.||.||.||..|.||||||.|.|||||.|||||
RBAM_018740__ 301 TTGTCGGTGATGTATGTCACGTATTTTATTAAAGGGCTGGGTTATCCGCT 350
BSNT_03081___ 348 TTTTGCTTATTCTTTCTTGACATGGGTCATTTACAGAACACCGCAAAGCA 397
.|||||.||||||||.|||||||||||.||||||.|..|.|||.|||.||
RBAM_018740__ 351 GTTTGCCTATTCTTTTTTGACATGGGTGATTTACCGGTCGCCGAAAAACA 400
BSNT_03081___ 398 AACTGAGCACTGCTGTCGGCTGGTTTTGGATTGCATATTGCCTCGGCATG 447
..||.||.||.||.|||||||||||.|||||||||||||||..|||.|||
RBAM_018740__ 401 GGCTCAGTACGGCGGTCGGCTGGTTCTGGATTGCATATTGCTGCGGGATG 450
BSNT_03081___ 448 TTTGTGTTCGGCGCTTGGTACTCAAGCTACGCGATCAAAGCGTTCGGTTA 497
|||||.|||||.||||||||.|||||||..||.||||||.|.|||||.||
RBAM_018740__ 451 TTTGTATTCGGTGCTTGGTATTCAAGCTGGGCCATCAAATCCTTCGGCTA 500
BSNT_03081___ 498 TTTGAATACGCTTTGGAGCTCTATTTTCTGGGTATGTCTCGGTGCATTCT 547
|||||||||.||.|||||.||.|||||||||||.||.|||||.||.||.|
RBAM_018740__ 501 TTTGAATACACTGTGGAGTTCAATTTTCTGGGTCTGCCTCGGCGCGTTTT 550
BSNT_03081___ 548 TTGCATTGTTTATCAATAAAGACCGTTTTGAAAAGAAGAAAAGAAAAAGA 597
||||.|||.||.|.||||..|||||.|||||||||| ||||| ..|||
RBAM_018740__ 551 TTGCTTTGATTTTAAATAGGGACCGCTTTGAAAAGA--AAAAG--GCAGA 596
BSNT_03081___ 598 TCA----GAAACAGCCG-AGGAGCTTTTAA--AAGGG-GTTACGATTCTA 639
|.| |||| ||.|| |||| .|||| ||||| .|.||.||.||.
RBAM_018740__ 597 TAAGCGGGAAA-AGGCGCAGGA---ATTAATGAAGGGAATCACCATCCTT 642
BSNT_03081___ 640 TTTACAAATCCGCGCGTGCTTACAGGCGGAATCATCAGAATCATCAACAG 689
..|..|||||||||||||||..|.||.||.|||||..|.|||||.|||||
RBAM_018740__ 643 GCTGAAAATCCGCGCGTGCTCTCTGGGGGGATCATTCGGATCATTAACAG 692
BSNT_03081___ 690 CATTGGTACATATGGTTTTCCAGTCTTTTTGCCGATGCACATGGCCCAGC 739
||||||||||||.||.|||||.||.|||.|.||||||||.|||||.||||
RBAM_018740__ 693 CATTGGTACATACGGATTTCCGGTATTTCTTCCGATGCATATGGCGCAGC 742
BSNT_03081___ 740 ATGGAATTTCAACCAATGTGTGGCTGCAAATTTGGGGAACGATTTTCCTG 789
|.||.|||||.||.|||||.|||||.|||||||||||||||||.||.||.
RBAM_018740__ 743 ACGGCATTTCTACAAATGTATGGCTTCAAATTTGGGGAACGATCTTTCTC 792
BSNT_03081___ 790 GGGAACATTGTGTTTAACCTTATCTTTGGTATTGTCGGCGATAAATTCGG 839
||.||.||.||.||||||.|.|||||.||....|||||||||..||||||
RBAM_018740__ 793 GGAAATATCGTCTTTAACTTAATCTTCGGCGCAGTCGGCGATGCATTCGG 842
BSNT_03081___ 840 CTGGAAAAATACTGTTATTTGGTTCGGCGGAGTCGGCTGCGGCATTTTCA 889
||||||.||.|||||.||.||||||||.|||||.||||||||||||||.|
RBAM_018740__ 843 CTGGAAGAAGACTGTCATGTGGTTCGGGGGAGTGGGCTGCGGCATTTTTA 892
BSNT_03081___ 890 CCCTCTTATTATACTACGCACCTGTTTTCTC-CGGCGGAAGCTTAGCGGT 938
|.||.||||||||.||.||.||||||.|.|| |...|||| ||| ||..|
RBAM_018740__ 893 CTCTTTTATTATATTATGCTCCTGTTGTATCACATGGGAA-CTT-GCTTT 940
BSNT_03081___ 939 T-GTCAGCGTGATCGGCTTTATTTGGGGCGGTTTGCTGGCAGGCTATGTG 987
| ||||||.|..||||.|||||.|||||.||..|.||.||.||.|..||.
RBAM_018740__ 941 TCGTCAGCATTGTCGGTTTTATATGGGGAGGGCTCCTCGCCGGATTCGTT 990
BSNT_03081___ 988 CCGATTGGTGCAATTGTGCCGACGGTGGCAGGAAAAGATAAAGGGGCAG- 1036
|||||.||.||.||.||||||||||.|||.||.|..||||||||.||.|
RBAM_018740__ 991 CCGATCGGGGCTATCGTGCCGACGGCGGCCGGCAGCGATAAAGGTGCTGC 1040
BSNT_03081___ 1037 CCATGTCTGTATTAAATTTGGCTGCAGG-TTTATCAGCGTTTGTCGGCCC 1085
||||||||||.||||||.|||||||.|| ..|.||.||.|||||||||||
RBAM_018740__ 1041 CCATGTCTGTGTTAAATCTGGCTGCGGGCCCTGTCGGCATTTGTCGGCCC 1090
BSNT_03081___ 1086 CGCACTCGCTTGGCTGTTCATTGGTCTCGTCGGCGCGCAAGGTGTCGTCT 1135
|||.||.||.|||..||||||.||.||.||||||||.|||||.||.||.|
RBAM_018740__ 1091 CGCGCTTGCCTGGGCGTTCATCGGGCTTGTCGGCGCACAAGGCGTTGTAT 1140
BSNT_03081___ 1136 GGATCTTTGCGGCCCTTTACCTTGCAAGTGCGGTCTTGACGAAATGTATT 1185
||||.||.||.||.||.||..|.|.||
RBAM_018740__ 1141 GGATTTTCGCAGCGCTCTATTTCGTAA----------------------- 1167
BSNT_03081___ 1186 CATATACCTGAGGAAAAAGCAGTTAAGGAGGAAACATCTCCTCAATATGC 1235
RBAM_018740__ 1167 -------------------------------------------------- 1167
BSNT_03081___ 1236 ATCTTAA 1242
RBAM_018740__ 1167 ------- 1167
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.