Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03020 and RBAM_018380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:53
# Commandline: needle
# -asequence dna-align/BSNT_03020___yngI.1.9828.seq
# -bsequence dna-align/RBAM_018380___yngI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03020___yngI-RBAM_018380___yngI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03020___yngI-RBAM_018380___yngI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03020___yngI
# 2: RBAM_018380___yngI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1685
# Identity: 1194/1685 (70.9%)
# Similarity: 1194/1685 (70.9%)
# Gaps: 79/1685 ( 4.7%)
# Score: 3983.0
#
#
#=======================================
BSNT_03020___ 1 ATGGCTGAACTCATCCATTCCACAATCGGCAGGCTGCTGGAACAAACAGC 50
|||||||||||.|||||||..|||..|||.|.||||||.||.|..||.||
RBAM_018380__ 1 ATGGCTGAACTTATCCATTTAACAGCCGGAAAGCTGCTTGAGCGGACCGC 50
BSNT_03020___ 51 TGATGC-GTATCCCGATCGAGATGCTGTTGTGTATCCAGACCGAAATATC 99
.|| || .|.|||.|||||.||.||.|||||.||.||.||.||.....|.
RBAM_018380__ 51 GGA-GCTTTTTCCGGATCGTGAAGCGGTTGTTTACCCTGAGCGCGGCCTT 99
BSNT_03020___ 100 CGCTATACGTACGCTCAATTTGACAGCCTGTGCCGTCAAACCGCTAAAGG 149
||.||||||||.||..|.||||||.|..|.|||||.||||||||.|||||
RBAM_018380__ 100 CGTTATACGTATGCCGAGTTTGACCGGTTATGCCGGCAAACCGCAAAAGG 149
BSNT_03020___ 150 TCTTATGCGGATGGGGATTGGAAAAGGAGACCACGTCGCCATATGGGCTT 199
.||.|||..|.||||..|||.|||||||||.||.||.|||||||||||.|
RBAM_018380__ 150 GCTGATGAAGCTGGGAGTTGAAAAAGGAGATCATGTGGCCATATGGGCAT 199
BSNT_03020___ 200 CTAATATCCCTGAATGGCTTGCCGTCCAGTTCGCAACTGCGAAGATCGGA 249
|.||.||.||.||||||||.||.|..||.||.|||||.|||||.|||||.
RBAM_018380__ 200 CCAACATTCCGGAATGGCTCGCGGCGCAATTTGCAACAGCGAAAATCGGC 249
BSNT_03020___ 250 GCCGTGCTCGTAACCGTCAATACCAATTATCAA---GCACACGAGCTGGA 296
|||||.||.||.|||.|.||||||||||.|||| ||| |||||.||
RBAM_018380__ 250 GCCGTTCTGGTCACCATTAATACCAATTTTCAAATCGCA---GAGCTCGA 296
BSNT_03020___ 297 CTACTTGTTAAAGCAATCGGATGCCGCCGCGCTT-ATTATCATGGATTCA 345
.|||.||.|....||.||.||.|.|.|.|| ||| ||.|||||||||||.
RBAM_018380__ 297 TTACCTGCTGGCACATTCAGACGTCTCGGC-CTTGATAATCATGGATTCC 345
BSNT_03020___ 346 TACAGGGGCACTTCTTATCCAGACATCGTAAACAGTTTAATTCCAGAACT 395
|||.||...||.||||||...||.|||||.||.|...|.|||||.||.||
RBAM_018380__ 346 TACCGGCAGACATCTTATGTTGAAATCGTGAATAAGCTGATTCCGGAGCT 395
BSNT_03020___ 396 GCAAGAAGCAA------AGCCCGGCCAACTGAAATCTGAACGCTATCCCT 439
|.| || |||.||||...|||...||..||||.|||||.|
RBAM_018380__ 396 GAA------AACTTGTGAGCGCGGCAGGCTGCGTTCGAAACGTTATCCAT 439
BSNT_03020___ 440 TTTTAAAAACGCTGATCTATATTGGCAATAAACGGTTGGCTGGCATGTAT 489
|||||...|||.||.|.|||||.||..|||||.|...|.|.||.|||.|.
RBAM_018380__ 440 TTTTACGGACGGTGTTATATATCGGTGATAAAAGCCCGCCCGGGATGCAC 489
BSNT_03020___ 490 CATTGGGA--CGAGACAGAGATATTGGCGAAAACAGTGACAGATGCTGA- 536
|.|||||| |....|.| ||||.||.|| ||.|.||.||.||||| ||
RBAM_018380__ 490 CGTTGGGATTCATTGCTG-GATAATGCCG-AAGCTGTAACGGATGC-GAC 536
BSNT_03020___ 537 GCTTGAAGAGAGAATGAACAGCCTGGATAAAGACAATGTG-ATTAATATG 585
||||||.|..||.|||.||||||||.|.||.||..|| || |||.|||||
RBAM_018380__ 537 GCTTGACGGAAGGATGGACAGCCTGAAAAAGGATGAT-TGCATTCATATG 585
BSNT_03020___ 586 CAATACACATCAGGAACGACAGGGTTTCCAAAAGGCGTGATGCTGACCCA 635
|||||.||||||||.|||||.||.|||||.||.|||||.|||||..|.||
RBAM_018380__ 586 CAATATACATCAGGTACGACCGGATTTCCGAAGGGCGTCATGCTCTCACA 635
BSNT_03020___ 636 TTTCAATGTCATCAATAACGCTGCTAATATCGCTGAATGTATG--GCTTT 683
|||.|||.||.|.||||||||.||.||||||||.|||||.||| ||||
RBAM_018380__ 636 TTTTAATATCGTAAATAACGCGGCCAATATCGCAGAATGCATGAAGCTT- 684
BSNT_03020___ 684 AACCTCTCAA--GACCGCATGTGCATCCCGGTTCCGTTTTTTCACTGCTT 731
|| .|||| |||||..|.||.||.||.||.||||||||.||||||||
RBAM_018380__ 685 -AC--TTCAAGTGACCGTTTATGTATTCCCGTGCCGTTTTTCCACTGCTT 731
BSNT_03020___ 732 TGGATGCGTCCTTGGGGTTTTGGCATGTGTATCCGTCGGG-GCAGCCATG 780
.||.||.||.||.||.||..||||||||||.|||| |||| ||.||.|||
RBAM_018380__ 732 CGGGTGTGTGCTCGGCGTGCTGGCATGTGTTTCCG-CGGGTGCGGCGATG 780
BSNT_03020___ 781 ATACCCGTGCAAGAATTTGATC--CCGTTACCGTCCTTAAAACGGTAGAA 828
||.||..|..||.|.|||..|| ||| .||||.||.||||||||.||.
RBAM_018380__ 781 ATTCCGATCGAACAGTTTTCTCCGCCG--GCCGTTCTGAAAACGGTGGAG 828
BSNT_03020___ 829 AAAGAGAAATGCACAGCGCTCCATGGTGTGCCTACCATGTTTATCGC--- 875
.||||....||.||.||.||.||.|||||.||.||.|||||||||||
RBAM_018380__ 829 CAAGAAGCCTGTACGGCTCTGCACGGTGTACCGACGATGTTTATCGCCCT 878
BSNT_03020___ 876 ------TGAGCTGCATCATCCGGATTTTGATGCATATGATCTAT-CGACG 918
||| ||.||| ||||..||.|||||||||.| |.|||
RBAM_018380__ 879 CCTAAATGA-------CAGCCG--TTTTTCTGAATATGATCTTTCCCACG 919
BSNT_03020___ 919 CTCCGAACAGGAATCATGGCCGGCTCTCCCTGTCCAAGTGAAGTGATGAA 968
|||||||.||.||.|||||.|||||.||.||.||....|||||.||||.
RBAM_018380__ 920 -TCCGAACCGGGATTATGGCAGGCTCGCCATGCCCGGCGGAAGTCATGAG 968
BSNT_03020___ 969 AGCTGTGATTG--AAAGGATGGGCATGAAAGACATTACGATCGCCTATGG 1016
||..|||||.| ||| |||||.||||..||||||||.||.|||||.||
RBAM_018380__ 969 AGAAGTGATCGGCAAA--ATGGGGATGACTGACATTACAATTGCCTACGG 1016
BSNT_03020___ 1017 ACAAACCGAAGCCTCGCCAGTCATTACGCAAACGAGAGCAAATGATTCCT 1066
|||.||||||||.||.||.||.||||||||.||.|||.|..|||||||.|
RBAM_018380__ 1017 ACAGACCGAAGCATCACCTGTTATTACGCAGACAAGAACGGATGATTCAT 1066
BSNT_03020___ 1067 TCATAAGAAGAGTCGAAACAACCGGCCGCGCCCTGCCACATACTGAGGTG 1116
|...|||||||||.||||||.|.||.|||||.||.||.||||..||.||.
RBAM_018380__ 1067 TTGAAAGAAGAGTGGAAACAGCGGGGCGCGCGCTTCCCCATATCGAAGTC 1116
BSNT_03020___ 1117 AAAATTGTAGAACCTGGGACATGTCAAGAAGTTCAAAGAGGCATGCAGGG 1166
|.|||.||....||.||.||||....|||||......|.|||...||.||
RBAM_018380__ 1117 AGAATCGTTCGGCCCGGAACATCCGGAGAAGCCGCCCGGGGCGAACAAGG 1166
BSNT_03020___ 1167 AGAGCTGTGCACCCGTGGCTATCACGTCATGAAAGGCTATTATAAAGACA 1216
||||||.||||||||.||.|||||.|||||||||||||||||||||.|..
RBAM_018380__ 1167 AGAGCTCTGCACCCGCGGATATCATGTCATGAAAGGCTATTATAAAAATC 1216
BSNT_03020___ 1217 AAGAAGCGACCAGAA-AAGCAATCAATCATGACGGATGGCTGTTTACCGG 1265
||||||||||| ||| ||||.||..|..|.|||||.||||||..||||||
RBAM_018380__ 1217 AAGAAGCGACC-GAAGAAGCGATAGACAAAGACGGCTGGCTGCATACCGG 1265
BSNT_03020___ 1266 AGATCTTGCTGTCATGGATGAAGACGGATACTGCCGCATCACCGGAAGAT 1315
.|||.|.||.||||||||.||.|||||.||||||...|||||.||..|..
RBAM_018380__ 1266 TGATTTGGCGGTCATGGACGAGGACGGGTACTGCAAAATCACGGGCCGTC 1315
BSNT_03020___ 1316 TAAAAGATATGCTCATCAGAGGCGGCGAGAACATTTATCCGCGGGAAATT 1365
|.|||||.|||||.|||||.||||||||.||.||.||||||||.||.|||
RBAM_018380__ 1316 TGAAAGACATGCTGATCAGGGGCGGCGAAAATATCTATCCGCGCGAGATT 1365
BSNT_03020___ 1366 GAAGAATTTTTATACCGGCATCCCGCTGTTTTAGATGTACAGGTCGTTGG 1415
||.|||.|.|||||.|||||||||||.||...|||.||.||||||||.||
RBAM_018380__ 1366 GAGGAAATGTTATATCGGCATCCCGCGGTAGCAGACGTTCAGGTCGTCGG 1415
BSNT_03020___ 1416 TGTGCCTGACGCCAAATTCGGGGAGGAAGCTGCAGCCTGGATTAAACTGA 1465
.||.|||||..|.||||.|||.||.||.||.||.||.|||.|.|..||.|
RBAM_018380__ 1416 CGTTCCTGATCCGAAATACGGAGAAGAGGCCGCGGCGTGGGTCAGGCTCA 1465
BSNT_03020___ 1466 AAGACGGTAAAAGCGTTTCACCTGATGAGCTTAAAGCCTATTGCAAAGGG 1515
|||||||..|||.||.|||..|.||.||..|.|.|.|||.||||||||..
RBAM_018380__ 1466 AAGACGGACAAACCGCTTCCGCAGAAGACATCAGAACCTTTTGCAAAGAA 1515
BSNT_03020___ 1516 AAAATCGCCCGCCACAAAATTCCGCGTTATGTTATTTTTACGGATGACTA 1565
.|.|||||||||.|.|||.|.||..|.||.|||.|.|||||.|||||.||
RBAM_018380__ 1516 CATATCGCCCGCTATAAAGTCCCCAGGTACGTTTTGTTTACAGATGAATA 1565
BSNT_03020___ 1566 TCCGATGACGGCCTCAGGCAAAATTCAAAAATATAAACTGCGAGAAAAAA 1615
|||.|||||.||||||||.||||||||.||||..||.|||||.|||||||
RBAM_018380__ 1566 TCCAATGACAGCCTCAGGAAAAATTCAGAAATTCAAGCTGCGGGAAAAAA 1615
BSNT_03020___ 1616 CGATTGAAATGTTCAACCTATCATCAAGTCAATGA 1650
||||||||..|.||||..||.|.|.|
RBAM_018380__ 1616 CGATTGAAGAGCTCAAGTTAACTTAA--------- 1641
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