Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03014 and RBAM_018330

See Amino acid alignment / Visit BSNT_03014 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:53
# Commandline: needle
#    -asequence dna-align/BSNT_03014.1.9828.seq
#    -bsequence dna-align/RBAM_018330___yngE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03014-RBAM_018330___yngE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03014-RBAM_018330___yngE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03014
# 2: RBAM_018330___yngE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1556
# Identity:    1152/1556 (74.0%)
# Similarity:  1152/1556 (74.0%)
# Gaps:          52/1556 ( 3.3%)
# Score: 4041.0
# 
#
#=======================================

BSNT_03014         1 ATGGATTATGAAAAGGAACGAACAGA-ACG-GGCTGAACGGATTCGAAAA     48
                     ||||||||.|||||.||||| .|||| ||| .||..||| |||| |||||
RBAM_018330__      1 ATGGATTACGAAAAAGAACG-GCAGACACGCAGCAAAAC-GATT-GAAAA     47

BSNT_03014        49 -GGCGGAGCGGAAAAGTATCA-TCAAGGCAATCGGGAA-AAAGGCAAGCT     95
                      ||.|||||.|..||.||||| .||| |||| ||..|| ||.||.||.||
RBAM_018330__     48 GGGAGGAGCCGCGAAATATCACGCAA-GCAA-CGAAAAGAAGGGAAAACT     95

BSNT_03014        96 CTTTGTCAGAGAGCGGCTTTCCCTTCTCTTTGACGATGACATTGAGC--T    143
                     .|||||.|||||..||||....|||.|.||.||.||.|.|||  |.|  |
RBAM_018330__     96 TTTTGTAAGAGACAGGCTGAAGCTTTTATTCGATGACGGCAT--ATCCGT    143

BSNT_03014       144 AGAAGACGCTTTTTTTGCGGAATGTATGTCAGACGGGCTTCCCGCTGACG    193
                     .||||||||||||||.||.||.||.|||||||||||.|||||.|||||||
RBAM_018330__    144 TGAAGACGCTTTTTTCGCCGAGTGCATGTCAGACGGACTTCCGGCTGACG    193

BSNT_03014       194 GAGTTGTAACCGGTATCGGCAAAATCGGCGGCCAAACTGTTTGCGTCATG    243
                     |.||.||.|||||.|||||.|..|||||||||..|||.|||||.||.|||
RBAM_018330__    194 GGGTCGTTACCGGAATCGGAACCATCGGCGGCAGAACCGTTTGTGTGATG    243

BSNT_03014       244 GCGAATGATTCAACAGTGAAAGCGGGGTCATGGGGAGCTAAAACAGTTGA    293
                     ||.||.||.|||||.||.||.|||||.||.|||||.||.|||||.||.||
RBAM_018330__    244 GCAAACGACTCAACCGTAAAGGCGGGCTCGTGGGGCGCGAAAACGGTGGA    293

BSNT_03014       294 AAAAATCATCAGAATTCAAGAAACCGCGGAAAAATTAAACTGTCCGCTCA    343
                     ||||||||||.|.|||||.||.||.||||||||..|..|.|||||||||.
RBAM_018330__    294 AAAAATCATCCGCATTCAGGAGACGGCGGAAAAGCTTCAGTGTCCGCTCT    343

BSNT_03014       344 TTTATTTAGTCGATTCGGCAGGCGCCCGAATTACCGACCAAATCAATGTC    393
                     |.||.|||||||||||.|||||.||..|||||||.||.||..||.|..|.
RBAM_018330__    344 TGTACTTAGTCGATTCCGCAGGTGCGAGAATTACGGATCAGGTCGACATG    393

BSNT_03014       394 TTTCCAGGGAGACGCGGTGCAGGAAGAATTTTTTACAATCAAGTCAAATT    443
                     ||.||.||.|||.|.||.||.||..|.||.|||||.||||||||.||..|
RBAM_018330__    394 TTCCCGGGCAGAAGGGGAGCCGGCCGCATCTTTTATAATCAAGTAAAGCT    443

BSNT_03014       444 ATCGGGACGCATTCCGCAAATCTGTCTGCTTTTCGGACCATCTGCGGCAG    493
                     ||||||.||||||||||||||||||.|..|.|||||.||.||.||.||.|
RBAM_018330__    444 ATCGGGCCGCATTCCGCAAATCTGTTTATTGTTCGGCCCTTCCGCTGCGG    493

BSNT_03014       494 GTGGCGCTTATATTCCGGCCTTCTGTGATATCGTCGTTATGGTAGACGGT    543
                     |.||||||||.|||||||||||.||.||.||.|||.|||||||.||.||.
RBAM_018330__    494 GCGGCGCTTACATTCCGGCCTTTTGCGACATTGTCATTATGGTCGAAGGC    543

BSNT_03014       544 AACGCCTCCATGTATTTAGGCTCGCCAAGGATGGCGGAAATGGTTATTGG    593
                     |||||.||||||||.|||||.||.||..|.|||||.||||||||.|||||
RBAM_018330__    544 AACGCATCCATGTACTTAGGTTCCCCGCGTATGGCAGAAATGGTGATTGG    593

BSNT_03014       594 AGAAAAAGTGTCTCTTGAAGAAATGGGTGGCGCCCGTATGCATTGCTCAA    643
                     .||.|||||.||.||||||||||||||.|||||||||||||||||.||..
RBAM_018330__    594 CGAGAAAGTATCGCTTGAAGAAATGGGCGGCGCCCGTATGCATTGTTCCG    643

BSNT_03014       644 TCTCCGGCTGCGGAGATATTCTTGCAGAAACTGAAGAAGAAGCCATACA-    692
                     |.||.||||||||.|||.|.||.||....||.|||.|.||.||.|| || 
RBAM_018330__    644 TATCAGGCTGCGGTGATCTCCTCGCCCCGACGGAACAGGAGGCAAT-CAT    692

BSNT_03014       693 GCTGGCGCGGGCTTATTTGTCT----TACTTTCCGGCAAATTTTCAAGAA    738
                     |.||||||.|.|.||    .||    ||.||||||.||||||.|...|||
RBAM_018330__    693 GATGGCGCAGACATA----CCTCAGCTATTTTCCGTCAAATTATACTGAA    738

BSNT_03014       739 AAAGCGCCCATTCA-------TGAGAAACGCCCGCCAAAACACTTCAAAA    781
                     ||||||||| .|||       |.||||   ||||  |||.|..||.||||
RBAM_018330__    739 AAAGCGCCC-GTCAACAAATCTAAGAA---CCCG--AAAGCTTTTGAAAA    782

BSNT_03014       782 CTCCGCTTGCCGACGTCATTCCGCAAAATCAAAACGCACCTTTTGATATG    831
                      .|||||..|.||.|||||.|||..|.|||||||||||||.||..|.|||
RBAM_018330__    783 -ACCGCTCTCAGATGTCATCCCGGCACATCAAAACGCACCGTTCAACATG    831

BSNT_03014       832 CAT-GAGCTGATTGAGCGGGTCATAGATGAAGACTCATTTTTTGAGATCA    880
                      || ||..|.|||||.||.|||||.|||||||||||||||||||||||.|
RBAM_018330__    832 -ATGGATTTAATTGAACGTGTCATTGATGAAGACTCATTTTTTGAGATTA    880

BSNT_03014       881 AAGCCTTATTTGCACCGGAATTATTGACGGGCCTCGCACGAATCCACGGA    930
                     ||.|.||||||||.|.|||||||.|.|||||.||.||.||.||.||||||
RBAM_018330__    881 AACCGTTATTTGCGCAGGAATTAATAACGGGGCTTGCGCGGATTCACGGA    930

BSNT_03014       931 CAGCCTGTCGGCATTGTTGCAAACCAGCCGAAGGTAAAAGGAGGCGTCTT    980
                     |||||.|||||||||.|.||.||.||||||...||.|||||.||.||.||
RBAM_018330__    931 CAGCCGGTCGGCATTATCGCCAATCAGCCGCGTGTCAAAGGCGGGGTTTT    980

BSNT_03014       981 ATTCCACGATTCAGCAGACAAAGCGGCTAAGTTTATTACCTTATGTGACG   1030
                     |||.|.||||||.||.||.|||||.||.||.|||||..|.||.||.||||
RBAM_018330__    981 ATTTCTCGATTCGGCGGATAAAGCCGCAAAATTTATCGCTTTGTGCGACG   1030

BSNT_03014      1031 CTTTTCATATCCCATTGCTGTTCTTAGCCGATATCCCCGGTTTTATGATT   1080
                     |.||.|||||.||..|.|||||.|||||.||.||.|||||.||.|||||.
RBAM_018330__   1031 CATTCCATATTCCGCTTCTGTTTTTAGCAGACATTCCCGGATTCATGATC   1080

BSNT_03014      1081 GGCACAAAAGTAGAACAGGCTGGGATTATCAGACACGGAGCGAAAATGAT   1130
                     ||.||.||.||.||.|||||.||.||.|||||.||.||.||.||||||||
RBAM_018330__   1081 GGAACGAAGGTTGAGCAGGCGGGCATCATCAGGCATGGCGCAAAAATGAT   1130

BSNT_03014      1131 TTCTGCGATGTCAGAGGCAACTGTTCCAAAACTCTCTGTCATTGTCCGAA   1180
                     .||.||.|||.|.||.||.||||||||.||.||.||.||.||.|||.|||
RBAM_018330__   1131 CTCCGCAATGGCGGAAGCGACTGTTCCGAAGCTTTCCGTTATCGTCAGAA   1180

BSNT_03014      1181 AAGCTTACGGGGCGGGGTTGTATGCAATGGCAGGGCCGGCATTTGAACCG   1230
                     ||||.|||||.||.||.||.||.||.|||||.|||||.||.|||||||||
RBAM_018330__   1181 AAGCCTACGGTGCCGGATTATACGCGATGGCGGGGCCTGCTTTTGAACCG   1230

BSNT_03014      1231 GATTGCTGTCTAGCGCTCCCAACCGCCCAAATCGCCGTCATGGGCCCTGA   1280
                     ||.||||||.|||||||.||.||.||.|||||.|||||.|||||.|||||
RBAM_018330__   1231 GACTGCTGTTTAGCGCTTCCGACTGCGCAAATTGCCGTAATGGGTCCTGA   1280

BSNT_03014      1281 GGCAGCTGTAAACGCTGTCTACGCTAAAAAAATCGCCGAGCT---GCCAG   1327
                     .|||||.||.||.||.||||||||.||.||||||..||||||   .||.|
RBAM_018330__   1281 AGCAGCGGTGAATGCGGTCTACGCAAACAAAATCAGCGAGCTAGCCCCTG   1330

BSNT_03014      1328 AAGAAGAGAGAGCC-GCATTTA-TCAGCAGCAAA-CGGGAGGAATACAAA   1374
                     |||||   || ||| ||.|||| |||  ||.||| ||.||.|||||.||.
RBAM_018330__   1331 AAGAA---AG-GCCGGCTTTTATTCA--AGAAAAGCGTGATGAATATAAG   1374

BSNT_03014      1375 GAGGACATCAATATCTACCGTCTGGCTTCAGAAATGATCATTGATGCTGT   1424
                     ||.|||||.||..|.|||||.||.||.||.||||||.|.|||||.|...|
RBAM_018330__   1375 GAAGACATTAACCTTTACCGGCTTGCCTCTGAAATGGTGATTGACGGCAT   1424

BSNT_03014      1425 TATCCCAGCCAATTCGCTGCGTGATGAGCTGGCCAAACGGCTCAAGGCAT   1474
                     |.|.||.||..||||..||||.||.||.||....|||||.||||..||.|
RBAM_018330__   1425 TGTTCCTGCTGATTCCTTGCGGGAAGAACTCAATAAACGCCTCACTGCTT   1474

BSNT_03014      1475 ACATGACAAAGGAAATGACATTTACCAATCGAAAGCATCCGGTTTATCCG   1524
                     |||||.|.||..||.|||||||.||..|.||.||.||.||.||.||.|||
RBAM_018330__   1475 ACATGTCCAAACAACTGACATTCACACACCGGAAACACCCCGTATACCCG   1524

BSNT_03014      1525 GTGTAA   1530
                     ||.|||
RBAM_018330__   1525 GTATAA   1530


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