Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03014 and RBAM_018330
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:53
# Commandline: needle
# -asequence dna-align/BSNT_03014.1.9828.seq
# -bsequence dna-align/RBAM_018330___yngE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03014-RBAM_018330___yngE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03014-RBAM_018330___yngE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03014
# 2: RBAM_018330___yngE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1556
# Identity: 1152/1556 (74.0%)
# Similarity: 1152/1556 (74.0%)
# Gaps: 52/1556 ( 3.3%)
# Score: 4041.0
#
#
#=======================================
BSNT_03014 1 ATGGATTATGAAAAGGAACGAACAGA-ACG-GGCTGAACGGATTCGAAAA 48
||||||||.|||||.||||| .|||| ||| .||..||| |||| |||||
RBAM_018330__ 1 ATGGATTACGAAAAAGAACG-GCAGACACGCAGCAAAAC-GATT-GAAAA 47
BSNT_03014 49 -GGCGGAGCGGAAAAGTATCA-TCAAGGCAATCGGGAA-AAAGGCAAGCT 95
||.|||||.|..||.||||| .||| |||| ||..|| ||.||.||.||
RBAM_018330__ 48 GGGAGGAGCCGCGAAATATCACGCAA-GCAA-CGAAAAGAAGGGAAAACT 95
BSNT_03014 96 CTTTGTCAGAGAGCGGCTTTCCCTTCTCTTTGACGATGACATTGAGC--T 143
.|||||.|||||..||||....|||.|.||.||.||.|.||| |.| |
RBAM_018330__ 96 TTTTGTAAGAGACAGGCTGAAGCTTTTATTCGATGACGGCAT--ATCCGT 143
BSNT_03014 144 AGAAGACGCTTTTTTTGCGGAATGTATGTCAGACGGGCTTCCCGCTGACG 193
.||||||||||||||.||.||.||.|||||||||||.|||||.|||||||
RBAM_018330__ 144 TGAAGACGCTTTTTTCGCCGAGTGCATGTCAGACGGACTTCCGGCTGACG 193
BSNT_03014 194 GAGTTGTAACCGGTATCGGCAAAATCGGCGGCCAAACTGTTTGCGTCATG 243
|.||.||.|||||.|||||.|..|||||||||..|||.|||||.||.|||
RBAM_018330__ 194 GGGTCGTTACCGGAATCGGAACCATCGGCGGCAGAACCGTTTGTGTGATG 243
BSNT_03014 244 GCGAATGATTCAACAGTGAAAGCGGGGTCATGGGGAGCTAAAACAGTTGA 293
||.||.||.|||||.||.||.|||||.||.|||||.||.|||||.||.||
RBAM_018330__ 244 GCAAACGACTCAACCGTAAAGGCGGGCTCGTGGGGCGCGAAAACGGTGGA 293
BSNT_03014 294 AAAAATCATCAGAATTCAAGAAACCGCGGAAAAATTAAACTGTCCGCTCA 343
||||||||||.|.|||||.||.||.||||||||..|..|.|||||||||.
RBAM_018330__ 294 AAAAATCATCCGCATTCAGGAGACGGCGGAAAAGCTTCAGTGTCCGCTCT 343
BSNT_03014 344 TTTATTTAGTCGATTCGGCAGGCGCCCGAATTACCGACCAAATCAATGTC 393
|.||.|||||||||||.|||||.||..|||||||.||.||..||.|..|.
RBAM_018330__ 344 TGTACTTAGTCGATTCCGCAGGTGCGAGAATTACGGATCAGGTCGACATG 393
BSNT_03014 394 TTTCCAGGGAGACGCGGTGCAGGAAGAATTTTTTACAATCAAGTCAAATT 443
||.||.||.|||.|.||.||.||..|.||.|||||.||||||||.||..|
RBAM_018330__ 394 TTCCCGGGCAGAAGGGGAGCCGGCCGCATCTTTTATAATCAAGTAAAGCT 443
BSNT_03014 444 ATCGGGACGCATTCCGCAAATCTGTCTGCTTTTCGGACCATCTGCGGCAG 493
||||||.||||||||||||||||||.|..|.|||||.||.||.||.||.|
RBAM_018330__ 444 ATCGGGCCGCATTCCGCAAATCTGTTTATTGTTCGGCCCTTCCGCTGCGG 493
BSNT_03014 494 GTGGCGCTTATATTCCGGCCTTCTGTGATATCGTCGTTATGGTAGACGGT 543
|.||||||||.|||||||||||.||.||.||.|||.|||||||.||.||.
RBAM_018330__ 494 GCGGCGCTTACATTCCGGCCTTTTGCGACATTGTCATTATGGTCGAAGGC 543
BSNT_03014 544 AACGCCTCCATGTATTTAGGCTCGCCAAGGATGGCGGAAATGGTTATTGG 593
|||||.||||||||.|||||.||.||..|.|||||.||||||||.|||||
RBAM_018330__ 544 AACGCATCCATGTACTTAGGTTCCCCGCGTATGGCAGAAATGGTGATTGG 593
BSNT_03014 594 AGAAAAAGTGTCTCTTGAAGAAATGGGTGGCGCCCGTATGCATTGCTCAA 643
.||.|||||.||.||||||||||||||.|||||||||||||||||.||..
RBAM_018330__ 594 CGAGAAAGTATCGCTTGAAGAAATGGGCGGCGCCCGTATGCATTGTTCCG 643
BSNT_03014 644 TCTCCGGCTGCGGAGATATTCTTGCAGAAACTGAAGAAGAAGCCATACA- 692
|.||.||||||||.|||.|.||.||....||.|||.|.||.||.|| ||
RBAM_018330__ 644 TATCAGGCTGCGGTGATCTCCTCGCCCCGACGGAACAGGAGGCAAT-CAT 692
BSNT_03014 693 GCTGGCGCGGGCTTATTTGTCT----TACTTTCCGGCAAATTTTCAAGAA 738
|.||||||.|.|.|| .|| ||.||||||.||||||.|...|||
RBAM_018330__ 693 GATGGCGCAGACATA----CCTCAGCTATTTTCCGTCAAATTATACTGAA 738
BSNT_03014 739 AAAGCGCCCATTCA-------TGAGAAACGCCCGCCAAAACACTTCAAAA 781
||||||||| .||| |.|||| |||| |||.|..||.||||
RBAM_018330__ 739 AAAGCGCCC-GTCAACAAATCTAAGAA---CCCG--AAAGCTTTTGAAAA 782
BSNT_03014 782 CTCCGCTTGCCGACGTCATTCCGCAAAATCAAAACGCACCTTTTGATATG 831
.|||||..|.||.|||||.|||..|.|||||||||||||.||..|.|||
RBAM_018330__ 783 -ACCGCTCTCAGATGTCATCCCGGCACATCAAAACGCACCGTTCAACATG 831
BSNT_03014 832 CAT-GAGCTGATTGAGCGGGTCATAGATGAAGACTCATTTTTTGAGATCA 880
|| ||..|.|||||.||.|||||.|||||||||||||||||||||||.|
RBAM_018330__ 832 -ATGGATTTAATTGAACGTGTCATTGATGAAGACTCATTTTTTGAGATTA 880
BSNT_03014 881 AAGCCTTATTTGCACCGGAATTATTGACGGGCCTCGCACGAATCCACGGA 930
||.|.||||||||.|.|||||||.|.|||||.||.||.||.||.||||||
RBAM_018330__ 881 AACCGTTATTTGCGCAGGAATTAATAACGGGGCTTGCGCGGATTCACGGA 930
BSNT_03014 931 CAGCCTGTCGGCATTGTTGCAAACCAGCCGAAGGTAAAAGGAGGCGTCTT 980
|||||.|||||||||.|.||.||.||||||...||.|||||.||.||.||
RBAM_018330__ 931 CAGCCGGTCGGCATTATCGCCAATCAGCCGCGTGTCAAAGGCGGGGTTTT 980
BSNT_03014 981 ATTCCACGATTCAGCAGACAAAGCGGCTAAGTTTATTACCTTATGTGACG 1030
|||.|.||||||.||.||.|||||.||.||.|||||..|.||.||.||||
RBAM_018330__ 981 ATTTCTCGATTCGGCGGATAAAGCCGCAAAATTTATCGCTTTGTGCGACG 1030
BSNT_03014 1031 CTTTTCATATCCCATTGCTGTTCTTAGCCGATATCCCCGGTTTTATGATT 1080
|.||.|||||.||..|.|||||.|||||.||.||.|||||.||.|||||.
RBAM_018330__ 1031 CATTCCATATTCCGCTTCTGTTTTTAGCAGACATTCCCGGATTCATGATC 1080
BSNT_03014 1081 GGCACAAAAGTAGAACAGGCTGGGATTATCAGACACGGAGCGAAAATGAT 1130
||.||.||.||.||.|||||.||.||.|||||.||.||.||.||||||||
RBAM_018330__ 1081 GGAACGAAGGTTGAGCAGGCGGGCATCATCAGGCATGGCGCAAAAATGAT 1130
BSNT_03014 1131 TTCTGCGATGTCAGAGGCAACTGTTCCAAAACTCTCTGTCATTGTCCGAA 1180
.||.||.|||.|.||.||.||||||||.||.||.||.||.||.|||.|||
RBAM_018330__ 1131 CTCCGCAATGGCGGAAGCGACTGTTCCGAAGCTTTCCGTTATCGTCAGAA 1180
BSNT_03014 1181 AAGCTTACGGGGCGGGGTTGTATGCAATGGCAGGGCCGGCATTTGAACCG 1230
||||.|||||.||.||.||.||.||.|||||.|||||.||.|||||||||
RBAM_018330__ 1181 AAGCCTACGGTGCCGGATTATACGCGATGGCGGGGCCTGCTTTTGAACCG 1230
BSNT_03014 1231 GATTGCTGTCTAGCGCTCCCAACCGCCCAAATCGCCGTCATGGGCCCTGA 1280
||.||||||.|||||||.||.||.||.|||||.|||||.|||||.|||||
RBAM_018330__ 1231 GACTGCTGTTTAGCGCTTCCGACTGCGCAAATTGCCGTAATGGGTCCTGA 1280
BSNT_03014 1281 GGCAGCTGTAAACGCTGTCTACGCTAAAAAAATCGCCGAGCT---GCCAG 1327
.|||||.||.||.||.||||||||.||.||||||..|||||| .||.|
RBAM_018330__ 1281 AGCAGCGGTGAATGCGGTCTACGCAAACAAAATCAGCGAGCTAGCCCCTG 1330
BSNT_03014 1328 AAGAAGAGAGAGCC-GCATTTA-TCAGCAGCAAA-CGGGAGGAATACAAA 1374
||||| || ||| ||.|||| ||| ||.||| ||.||.|||||.||.
RBAM_018330__ 1331 AAGAA---AG-GCCGGCTTTTATTCA--AGAAAAGCGTGATGAATATAAG 1374
BSNT_03014 1375 GAGGACATCAATATCTACCGTCTGGCTTCAGAAATGATCATTGATGCTGT 1424
||.|||||.||..|.|||||.||.||.||.||||||.|.|||||.|...|
RBAM_018330__ 1375 GAAGACATTAACCTTTACCGGCTTGCCTCTGAAATGGTGATTGACGGCAT 1424
BSNT_03014 1425 TATCCCAGCCAATTCGCTGCGTGATGAGCTGGCCAAACGGCTCAAGGCAT 1474
|.|.||.||..||||..||||.||.||.||....|||||.||||..||.|
RBAM_018330__ 1425 TGTTCCTGCTGATTCCTTGCGGGAAGAACTCAATAAACGCCTCACTGCTT 1474
BSNT_03014 1475 ACATGACAAAGGAAATGACATTTACCAATCGAAAGCATCCGGTTTATCCG 1524
|||||.|.||..||.|||||||.||..|.||.||.||.||.||.||.|||
RBAM_018330__ 1475 ACATGTCCAAACAACTGACATTCACACACCGGAAACACCCCGTATACCCG 1524
BSNT_03014 1525 GTGTAA 1530
||.|||
RBAM_018330__ 1525 GTATAA 1530
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