Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04403 and RBAM_018290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:52
# Commandline: needle
# -asequence dna-align/BSNT_04403.1.9828.seq
# -bsequence dna-align/RBAM_018290___bioW.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04403-RBAM_018290___bioW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04403-RBAM_018290___bioW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04403
# 2: RBAM_018290___bioW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 800
# Identity: 458/800 (57.2%)
# Similarity: 458/800 (57.2%)
# Gaps: 196/800 (24.5%)
# Score: 1390.0
#
#
#=======================================
BSNT_04403 1 ----------------AT----------GAATGGG--------------- 9
|| |||||.|
RBAM_018290__ 1 ATGCGGGAAGAAACCTATTACAGCGTCAGAATGAGAGCTTCCCGAAACGC 50
BSNT_04403 10 -TCTCATGAAGACGGCGGAAAGCATATATCCGGCGGAGAACGGCTTATTC 58
.|.|||||..|.||||||||.||.||.|||||||||||||||||.| ||
RBAM_018290__ 51 CCCCCATGAGCAGGGCGGAAAACACATTTCCGGCGGAGAACGGCTCA-TC 99
BSNT_04403 59 CTTTCCA-----TGAGATGAAGCATACAGTCAATGCTTTATTAGAAAAAG 103
..||.|| |.|.|.|||| |.||..|||..||||||.|.||||
RBAM_018290__ 100 ACTTACAGCGGTTTACAGGAAG----CGGTAGATGGCTTATTACATAAAG 145
BSNT_04403 104 GGTTATCCCATTCAAGAGGAAAACCTGATTTTATGCAAATTCAATTTGAA 153
|.||.||.||.||||||||.|.|||||||||||||||.|||||..|||||
RBAM_018290__ 146 GCTTCTCGCACTCAAGAGGGATACCTGATTTTATGCAGATTCAGCTTGAA 195
BSNT_04403 154 GAG--GTACATGAATCGATAAAAACCATTCAGCCATTGCCTGT--GTATA 199
|| .|| |||||.||||..||||.||.|..||.|||||.|| .|.|.
RBAM_018290__ 196 -AGCATTA-ATGAACCGATCGAAACGATCCGCCCTTTGCCGGTTGCTTTC 243
BSNT_04403 200 CGAATGAAGTGAG-CTGCCCGGGAGAAGGACAAAAGC--TTGCCCG-ATT 245
| ||.|| |.|| |...||||.|.|||||| |||| |.||||| |..
RBAM_018290__ 244 C--ATCAA-TCAGACACGCCGGAAAAAGGAC--AAGCAATCGCCCGCAAG 288
BSNT_04403 246 GTTATTGGAAAAAGAAGGCGTTTCACGAG-ACGTGATTGAAAAAGCGTAT 294
.||.| |.|||||..||.|.|||.|..| ||.||||.||.||||||||.
RBAM_018290__ 289 CTTCT--GCAAAAGGCGGGGATTCCCCCGCACATGATAGAGAAAGCGTAC 336
BSNT_04403 295 GAACAAATCCCAGAATGGTCAGATGTCAGGGGTGCGGTGTTGTTTGATAT 344
|||.|.||..|.||||...||||.|..||.||.|||||..||||||||
RBAM_018290__ 337 GAAAACATTGCGGAATATGCAGAAGCAAGAGGAGCGGTCCTGTTTGAT-- 384
BSNT_04403 345 TCATACAGGCAAGCGAATGGATCAA--ACAAAAGAA--AAAGGGGTGCGG 390
||.|.||||.|.|||.|.||..| .||.|.||| |.|||.||||||
RBAM_018290__ 385 --ATCCGGGCAGGAGAACGCATTGACGGCAGAGGAAATAGAGGTGTGCGG 432
BSNT_04403 391 GTCTCCAGAATGGATTGGCCG-GACGCTAATTTTGAAAAATGGGCGCTT- 438
||.|||.|||||||||||||| .|| .|.|||||.||||||||||..||
RBAM_018290__ 433 GTATCCCGAATGGATTGGCCGTCAC-ATGATTTTCAAAAATGGGCTTTTA 481
BSNT_04403 439 --CACAGTCACGTGCCGGCTCATTCAAGAATAAAAGAGGCCCTTGCGCTC 486
|||| ||.||||||...|||||.||||||||||.||.|.|||..||
RBAM_018290__ 482 CGCACA---ACATGCCGGAAAATTCACGAATAAAAGAAGCACATGCCATC 528
BSNT_04403 487 GCTTCAAAGGTAAGCCGGCAC--CCGGCAGCCATTGCAGAATTATGCTGG 534
||..||||.||..|| |||| ||||.....|||||.|||||.||||||
RBAM_018290__ 529 GCGGCAAAAGTTTGC--GCACATCCGGGGATTATTGCTGAATTGTGCTGG 576
BSNT_04403 535 TCGGACGATCCGGATTACATAACAGGCTATGTTGCGGGTAAGAAAATGGG 584
|||||.||.||.|||||||||||||||||.|||||.|..|||||..||||
RBAM_018290__ 577 TCGGATGACCCTGATTACATAACAGGCTACGTTGCCGCAAAGAAGCTGGG 626
BSNT_04403 585 CTATCAGCGTATTACAGCAATGA--AAGAATACGGGACTGAAGAGGGCTG 632
.||||||||.||| ||.|.|| ||||||.|.||| ||.||..||.|
RBAM_018290__ 627 ATATCAGCGGATT---GCCAAGATGAAGAATGCCGGA--GATGAAAGCGG 671
BSNT_04403 633 A------------------------------------------------- 633
|
RBAM_018290__ 672 ATGCCGGATTTTCTTTACAGATGGCTCCATAGATACGGAGAGTTGTATCC 721
BSNT_04403 633 -------------------------------------------------- 633
RBAM_018290__ 722 ATTTTTTGGAGAAGCAACCTGTATTCATTCAGCGGGAGGAGAACATATGA 771
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