Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04402 and RBAM_018280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:52
# Commandline: needle
# -asequence dna-align/BSNT_04402___bioA.1.9828.seq
# -bsequence dna-align/RBAM_018280___bioA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04402___bioA-RBAM_018280___bioA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04402___bioA-RBAM_018280___bioA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04402___bioA
# 2: RBAM_018280___bioA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1359
# Identity: 1050/1359 (77.3%)
# Similarity: 1050/1359 (77.3%)
# Gaps: 24/1359 ( 1.8%)
# Score: 3993.5
#
#
#=======================================
BSNT_04402___ 1 ATGACTCATGAT--TTGATAGAAAAAAGTAAAAAGCACCTCTGGCTGCCA 48
||||..|| || .||||.||||||||.|||.||||.||.||||||||.
RBAM_018280__ 1 ATGAAACA--ATCAATGATTGAAAAAAGCAAACAGCATCTTTGGCTGCCT 48
BSNT_04402___ 49 TTTACCCAAATGAAAGATTATGATGAAAACCCCTTAATCATCGAAAGCGG 98
||.||.||||||||||||||.||||||.|.||.||||||||.||||||||
RBAM_018280__ 49 TTCACACAAATGAAAGATTACGATGAAGATCCGTTAATCATTGAAAGCGG 98
BSNT_04402___ 99 GACTGGAATCAAAGTCCAAGACATAAATGGCAAGGAATACTATGACGGTT 148
.|.|||.||||...|..|||||||.|..|||||.|||||.||||||||.|
RBAM_018280__ 99 AAATGGGATCATGCTGAAAGACATCAGCGGCAAAGAATATTATGACGGCT 148
BSNT_04402___ 149 TTTCATCAGTTTGGCTTAATGTCCACGGACACCGCAAAAAAGAACTAGAT 198
||||.|||||.|||||.|||||.|||||.|||||||||||||||.|.|||
RBAM_018280__ 149 TTTCTTCAGTATGGCTCAATGTACACGGCCACCGCAAAAAAGAAATGGAT 198
BSNT_04402___ 199 AACGCCATAAAAAAACAGCTCGGAAAAATTGCGCACTCCACGTTGTTGGG 248
.|.||.||..||||||||||.|.||||||.||.||.||.||.||..||||
RBAM_018280__ 199 GAAGCGATTCAAAAACAGCTTGAAAAAATCGCTCATTCGACCTTACTGGG 248
BSNT_04402___ 249 CATGACCAACGTTCCAGCAACCCAGCTTGCCGAGACATTAATCGACATCA 298
.|||||.||||||||.|||||..|.||||||||||...|.|..|.|||||
RBAM_018280__ 249 TATGACGAACGTTCCCGCAACAGAACTTGCCGAGATGCTGACAGGCATCA 298
BSNT_04402___ 299 GCCCAAAAAAGCTCACGCGGGTCTTTTATTCAGACAGCGGTGCAGAAGCG 348
..||..|||||||.||.||.||.|||||.||.||||||||.||.|||||.
RBAM_018280__ 299 CACCGGAAAAGCTGACACGCGTTTTTTACTCCGACAGCGGAGCGGAAGCA 348
BSNT_04402___ 349 ATGGAAATAGCCTTAAAAATGGCGTTTCAGTATTGGAAGAACATTGGGAA 398
||||||||.||..|.||||||||.|||||.||.|||||.|||||.||||.
RBAM_018280__ 349 ATGGAAATCGCTCTGAAAATGGCCTTTCAATACTGGAAAAACATAGGGAG 398
BSNT_04402___ 399 GCCCGAGAAACAAAAATTTATCGCTATGAAAAACGGGTATCACGGTGATA 448
.|||||||||||.|..|||||..|||||.|.|||||.||||||||.||||
RBAM_018280__ 399 ACCCGAGAAACAGACGTTTATTTCTATGCAGAACGGCTATCACGGCGATA 448
BSNT_04402___ 449 CGATTGGCGCCGTCAGTGTCGGTTCAATTGAGCTTTTTCACCACGTATAC 498
||||.||.||||||||.|||||.||.|||||.||.||.|||||.||.|||
RBAM_018280__ 449 CGATCGGAGCCGTCAGCGTCGGCTCCATTGAACTCTTCCACCATGTGTAC 498
BSNT_04402___ 499 GGCCCGTTGATGTTCGAGAGTTACAAGGCACCGATTCCTTATGTGTATCG 548
||||||.|||||||.||.||.|||||.||.||||||||.|||||.||..|
RBAM_018280__ 499 GGCCCGCTGATGTTTGAAAGCTACAAAGCCCCGATTCCGTATGTATACAG 548
BSNT_04402___ 549 CTCTGAAAGCGGTGATCCTGATGAGTGCTGTGATCAGTGCCTCCGAGAGC 598
.|||||||||||.||.||.|...|||||.|.|||.|.|||||.|..|.||
RBAM_018280__ 549 ATCTGAAAGCGGCGACCCCGTACAGTGCCGGGATGAATGCCTTCACGCGC 598
BSNT_04402___ 599 TTGAACAGCTGCTT--AAAGAACATCACGAGGAAATTGCCGCGCTTTCCA 646
|.|||||||||||| |||| ||||||||.||.||||||||.|||.|.|
RBAM_018280__ 599 TCGAACAGCTGCTTGCAAAG--CATCACGAAGAGATTGCCGCACTTACGA 646
BSNT_04402___ 647 TTGAATCAATAGTACAAGGCGCGTCCGGTATGATCGTGATGCCGGAAGGA 696
|.|||||.||.||.||||||||.|||||.||||||||.|||||.|||||.
RBAM_018280__ 647 TCGAATCGATGGTGCAAGGCGCATCCGGGATGATCGTCATGCCTGAAGGC 696
BSNT_04402___ 697 TATTTGGCAGGGGTGCGCGAGCTATGTACAACATACGATGTCTTAATGAT 746
|.|.|||||||.||.||..||||.|||||..||||.|||||.||||||||
RBAM_018280__ 697 TTTCTGGCAGGCGTACGAAAGCTGTGTACGGCATATGATGTGTTAATGAT 746
BSNT_04402___ 747 CGTTGATGAAGTCGCTACAGGCTTTGGCCGTACAGGAAAAATGTTTGCGT 796
||||||.|||||.||.||.||.||.|||||.||.||||||||||||||.|
RBAM_018280__ 747 CGTTGACGAAGTGGCGACGGGGTTCGGCCGCACCGGAAAAATGTTTGCCT 796
BSNT_04402___ 797 GCGAGCACGAGAATGTCCAGCCTGATCTGATGGCTGCCGGTAAAGGCATT 846
|.|||||.||.|||||||||||.||..|||||||.||.||.|||||||||
RBAM_018280__ 797 GTGAGCATGAAAATGTCCAGCCGGACTTGATGGCGGCAGGGAAAGGCATT 846
BSNT_04402___ 847 ACAGGAGGCTATTTGCCAATTGCCGTTACGTTTGCCACTGAAGACATCTA 896
||.||||||||||||||.||.||.||.|||||||||||.||||.|||.||
RBAM_018280__ 847 ACGGGAGGCTATTTGCCGATCGCTGTGACGTTTGCCACAGAAGCCATTTA 896
BSNT_04402___ 897 TAAGGCATTCTATGATGATTATGAAAACCTAAAAACCTTTTTCCATGGCC 946
|.|.||.|||||.|||||.||.||.||..|.|||||.||||||||.||||
RBAM_018280__ 897 TGAAGCCTTCTACGATGACTACGACAAAATGAAAACATTTTTCCACGGCC 946
BSNT_04402___ 947 ATTCCTATACAGGCAATCAGCTTGGCTGTGCGGTTGCGCTTGAAAATCTG 996
|||||||||||||.|||||||||||||||||.|..||..|||||||||||
RBAM_018280__ 947 ATTCCTATACAGGAAATCAGCTTGGCTGTGCCGCGGCAATTGAAAATCTG 996
BSNT_04402___ 997 GCATTATTTGAATCTGAAAACATTGTGGAACAAGTAGCGGAAAAAAGTAA 1046
...|||||.|||||.||...|||.||.||||||||.||.||||||...||
RBAM_018280__ 997 CGTTTATTCGAATCAGAGCGCATCGTTGAACAAGTCGCCGAAAAATCAAA 1046
BSNT_04402___ 1047 AA----AGCTCCATTTTCTTCTTCAAGATCTGCACGC-TCTTCCTCATGT 1091
|| |||...|| |||||||.|||||| |.|| .|||||||||||
RBAM_018280__ 1047 AACGGCAGCGAAAT----TTCTTCATGATCTG-AAGCAGCTTCCTCATGT 1091
BSNT_04402___ 1092 TGGGGATATTCGGCAGCTTGGCTTTATGTGCGGTGCAGAGCTTGTCCGGT 1141
.||.|||.|.||.|||||.||.||.||||||||...|||||||||.|.|.
RBAM_018280__ 1092 CGGCGATGTCCGCCAGCTCGGTTTCATGTGCGGCATAGAGCTTGTGCAGG 1141
BSNT_04402___ 1142 CAAAGGAAACCAAAGAACCTTACCCGGCTGATCGGCGGATTGGATACAAA 1191
..||||..||.|||.|.|||||.|||.||||...||||||.||||||||.
RBAM_018280__ 1142 ATAAGGGGACAAAACAGCCTTATCCGCCTGAAAAGCGGATGGGATACAAG 1191
BSNT_04402___ 1192 GTTTCCTTAAAAATGAGAGAGTTAGGAATGCTGACAAGACCGCTTGGGGA 1241
||.|||||.||||||||||||.|.||.|||||||||.|.|||||.||.||
RBAM_018280__ 1192 GTGTCCTTGAAAATGAGAGAGCTTGGTATGCTGACACGGCCGCTCGGAGA 1241
BSNT_04402___ 1242 CGTGATTGCATTTCTGCCTCCTCTCGCCAGCACAGCTGAAGAGCTCACGG 1291
|||.||.||.||||||||.||.||.|||||||||.|.||..|| |.||
RBAM_018280__ 1242 CGTCATCGCCTTTCTGCCGCCGCTTGCCAGCACAACCGATCAG-TTAC-- 1288
BSNT_04402___ 1292 AA---ATGGTTGCCATTATGAAACAAGCGATCCACGAGGTTACGAGCCTT 1338
|| |||.|..|||||||||||.|||||||...||||||.||..|||.|
RBAM_018280__ 1289 AAGCCATGATCTCCATTATGAAAGAAGCGATAGCCGAGGTGACCGGCCGT 1338
BSNT_04402___ 1339 GAAGATTGA 1347
|.|..||||
RBAM_018280__ 1339 GGATTTTGA 1347
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