Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04401 and RBAM_018270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:52
# Commandline: needle
# -asequence dna-align/BSNT_04401.1.9828.seq
# -bsequence dna-align/RBAM_018270___bioF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04401-RBAM_018270___bioF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04401-RBAM_018270___bioF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04401
# 2: RBAM_018270___bioF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1199
# Identity: 745/1199 (62.1%)
# Similarity: 745/1199 (62.1%)
# Gaps: 196/1199 (16.3%)
# Score: 2296.0
#
#
#=======================================
BSNT_04401 1 ----------ATGAATGG----------GGCACCGGTTCCGG-----AGA 25
|.|.|||| |||.| |.|.||| |||
RBAM_018270__ 1 GTGGATTTTGACGGATGGCTCCTCGGAAGGCTC--GATGCGGTGAAAAGA 48
BSNT_04401 26 G---------------------GAACATTG---ATGGC---GAAAATCAA 48
| |||||..| |..|| .||||.|||
RBAM_018270__ 49 GACGGGCTGTATCGGACGCTGCGAACACAGGAAACCGCTCTCAAAACCAA 98
BSNT_04401 49 ACGG-------------TCTGGTCCTCAAACAATTATTTAGGGCTCGCAA 85
|.|| .||||.|.||.||..|.||||||||.||..|||
RBAM_018270__ 99 AGGGCAAAAGCGGCAGACCTGGGCGTCCAATGACTATTTAGGCCTGTCAA 148
BSNT_04401 86 GCGATAGA-CGTTTGATCGATGCAGCCCAAACAGCATTGCAGCAATTTGG 134
..||| || ||..|||||...||.||.|||||.||..|| |||...||.|
RBAM_018270__ 149 AAGAT-GAGCGGCTGATCACAGCCGCGCAAACGGCGATG-AGCCGGTTCG 196
BSNT_04401 135 GA-CAGGAAGTAGCGGTTCACGTTTAACGACAGGCAATTCGGTCTGGCAT 183
|| |.|||||..||||.|||||.|||||||||||.|||.|.||.|||||.
RBAM_018270__ 197 GAGCGGGAAGCGGCGGCTCACGGTTAACGACAGGAAATACTGTGTGGCAC 246
BSNT_04401 184 GAAAAGCTAGAAAAGAAGATTGCCAGCTTTAAGCGGACAGAAGCGGCCCT 233
|||||.||.|||.|.|..||.||....|||||.|.|||.||||||||..|
RBAM_018270__ 247 GAAAAACTTGAACACACAATCGCGGATTTTAAACAGACGGAAGCGGCTTT 296
BSNT_04401 234 GCTGTTTTCGAGCGGTTACTTGGCCAATGTCGGTGTCCTTTCATCCTTGC 283
..|||||||.||||||||||||||.|||.||||.||.|||.|.||..|||
RBAM_018270__ 297 ATTGTTTTCAAGCGGTTACTTGGCAAATATCGGCGTGCTTGCCTCACTGC 346
BSNT_04401 284 CAGAAAAGGAAGATGTCATTTTAAGTGACCAGCTCAATCATGCAAGTATT 333
|..||||.|..||||||||||||||.||.||.||.||.|||||.||.|||
RBAM_018270__ 347 CTCAAAAAGGCGATGTCATTTTAAGCGATCAACTGAACCATGCGAGCATT 396
BSNT_04401 334 ATCGACGGCTGCCGACTTTCTAAGGCTGATACAGTTGTTTATCGGCATAT 383
.|.|||||||||||..|.||.||.||.||.||..|.||.||.||.|||||
RBAM_018270__ 397 GTTGACGGCTGCCGTTTATCAAAAGCGGAAACCATCGTGTACCGCCATAT 446
BSNT_04401 384 TGATATGAATGATCTTGAAAACAAGCTGAATGAAACACAGCGTTATCAG- 432
|||||||..|||||||||.||.||.|| || .|..||| .|||
RBAM_018270__ 447 TGATATGGCTGATCTTGAGAAAAAACT---TG----CCTCCGT--CCAGG 487
BSNT_04401 433 --------CGCCGTTTTATCGTAACAGACGGGGTATTCAGCATGGATGGC 474
|||||.||.|||||.||||||||.||.|||||||||||.|||
RBAM_018270__ 488 CTCGGAACCGCCGCTTCATCGTCACAGACGGCGTCTTCAGCATGGACGGC 537
BSNT_04401 475 ACAATCGTCCCTCTTGATCAGATCATCTCACTTGCGAAACGCTATCATGC 524
||.||||..||||||||.|..||.||..|.|||||.||.|..||.||.||
RBAM_018270__ 538 ACCATCGCGCCTCTTGACCGCATAATGGCGCTTGCAAAGCAGTACCAGGC 587
BSNT_04401 525 CTTCGTGGTCGTTGATGACGCCCACGCAACAGGAGTTTTAGGTGATTCGG 574
.||.|||.|.|..||||||||.||.|||||.||.|| |.||||
RBAM_018270__ 588 ATTTGTGATAGCAGATGACGCGCATGCAACCGGTGT--------ACTCGG 629
BSNT_04401 575 G----AC----GAGGAACGAGTGAATACTTTGGTGTTTATCCTGACATTG 616
| || |.|||||.|||||.||.||.|||||||.||||||..|||
RBAM_018270__ 630 GGAAAACGGCGGGGGAACCAGTGACTATTTCGGTGTTTGTCCTGATGTTG 679
BSNT_04401 617 TGATCGGCACCTTAAGCAAAGCTGTTGGTACGGAAGGAGGTTTTGCGGCT 666
|.||||||||.||||||||||||||.||.||||||||.||||||||.||.
RBAM_018270__ 680 TCATCGGCACATTAAGCAAAGCTGTAGGAACGGAAGGCGGTTTTGCCGCG 729
BSNT_04401 667 GGATCAGCGGTCTTCATCGACTTTTTGCTGAACCATGCCAGAACATTTAT 716
||||||....|.|||||.||.|||||||||||.||.||..|.||.|||||
RBAM_018270__ 730 GGATCAAACATTTTCATTGATTTTTTGCTGAATCAGGCGCGGACGTTTAT 779
BSNT_04401 717 CTTTCAAACCGCTATTCCGCCAGCCAGCTGTGCGGCTGCTCACGAGGCTT 766
.|||||.||.||..|.|||||..|.|..|||||||||.|.||...|||.|
RBAM_018270__ 780 TTTTCAGACGGCCCTCCCGCCGTCAATTTGTGCGGCTTCGCATACGGCAT 829
BSNT_04401 767 TCAACATCAGAAC----------------------------CAGT----- 783
|..||||||.|.| ||||
RBAM_018270__ 830 TTGACATCATATCAGATATGCACGATACGCGCCGTGAGCTGCAGTCGTCT 879
BSNT_04401 784 ---------TTGAAGA------------ATATGGGTTATGTGGTGAAA-- 810
.|.||.| |||||||.|.|...||.|.|
RBAM_018270__ 880 GTCAAAATGATAAAAACGCGTCTGGCCGATATGGGCTTTACCGTAAGAGG 929
BSNT_04401 811 -GGAGATCACACACCGATTATTCCTGTAGTCATTGGCGATGCCCATAAAA 859
|||||| |||||||||||.||.||..||||.||.||||| ||||
RBAM_018270__ 930 CGGAGAT---ACACCGATTATCCCCGTTATCATCGGTGATGC----AAAA 972
BSNT_04401 860 ----CGGTCATATTT-----GCTGAAAAACTGCAGGGCAAGGGAATTTAT 900
||| ||| ||||.|...|||.||...||||||||.|..
RBAM_018270__ 973 ACAGCGG-----TTTCAGCCGCTGCACTGCTGGAGAAAAAGGGAATCTGC 1017
BSNT_04401 901 GCTCCTGCCATTCGGCCGCCGACCGTTGCGCCGGGTGAAAGCCGTATTCG 950
||.||.|||||.||.|||||..|||||.||...||.||||||.|.||..|
RBAM_018270__ 1018 GCCCCGGCCATCCGCCCGCCCGCCGTTCCGGAAGGCGAAAGCAGAATCAG 1067
BSNT_04401 951 AATTACAATCACGTCTGACCACAG--TATGGGTGATATTGATGATTTGCT 998
..|.||..|.|||.|.||.|.||| ||..| |||||.||.|| |||
RBAM_018270__ 1068 GCTGACCGTTACGGCGGATCGCAGCTTACAG--GATATAGACGA---GCT 1112
BSNT_04401 999 GA---AAACATTTCATTCAATCGGAAAGGAGCTGCATAT---CATTTGA 1041
|| ||.|||||.||||.||..||||.||||||.|||| ||..|||
RBAM_018270__ 1113 GACAGAAGCATTTGATTCCATTAGAAAAGAGCTGAATATAAACAAATGA 1161
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