Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04398 and RBAM_018250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:51
# Commandline: needle
# -asequence dna-align/BSNT_04398___bioB.1.9828.seq
# -bsequence dna-align/RBAM_018250___bioB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04398___bioB-RBAM_018250___bioB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04398___bioB-RBAM_018250___bioB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04398___bioB
# 2: RBAM_018250___bioB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1028
# Identity: 795/1028 (77.3%)
# Similarity: 795/1028 (77.3%)
# Gaps: 28/1028 ( 2.7%)
# Score: 3116.0
#
#
#=======================================
BSNT_04398___ 1 ATGAATCAATGGATGGAACTCGCAGACCGGGTGCTGGCTGGAGCAGAAGT 50
|||||||||||||||||.||.|||||..|.|||||||..||.||.|||||
RBAM_018250__ 1 ATGAATCAATGGATGGATCTTGCAGAGAGAGTGCTGGACGGGGCGGAAGT 50
BSNT_04398___ 51 GACTGACGAAGAGGCGCTTTCAATATTACATTGTCCTGATGAAGATATTT 100
.||..|..||||.|||||..|.||.|||.|||||||||||||.|||.|||
RBAM_018250__ 51 AACGAATCAAGAAGCGCTGGCCATTTTAAATTGTCCTGATGAGGATCTTT 100
BSNT_04398___ 101 TGCTATTAATGCATGGAGCTTTTCATATCAGAAAACACTTTTATGGAAAA 150
|..|..|.|||||||..|||||||||||||||||||..|||||.||||||
RBAM_018250__ 101 TATTGCTGATGCATGCCGCTTTTCATATCAGAAAACGATTTTACGGAAAA 150
BSNT_04398___ 151 AAAGTAAAGCTCAATATGATTATGAATGCGAAATCCGGGCTCTGCCCGGA 200
|||||||||||.|||||||||||||||||.|||||.||.||.||.|||||
RBAM_018250__ 151 AAAGTAAAGCTGAATATGATTATGAATGCAAAATCAGGCCTGTGTCCGGA 200
BSNT_04398___ 201 AAACTGCGGCTATTGTTCACAGTCTGCGATTTCGAAAGCGCCGATTGAGT 250
|||.|||||.||.||||||||.|||.|.||.||.||||||||||||||||
RBAM_018250__ 201 AAATTGCGGGTACTGTTCACAATCTTCAATATCAAAAGCGCCGATTGAGT 250
BSNT_04398___ 251 CTTATCGGATGGTGAATAAGGAAACGCTGCTTGAAGGCGCGAAGCGGGCG 300
||||||||||||||.|||||.|.|...|||||.||||.||.||.||.||.
RBAM_018250__ 251 CTTATCGGATGGTGGATAAGCATATATTGCTTAAAGGGGCAAAACGCGCC 300
BSNT_04398___ 301 CACGATCTGAATATCGGCACATATTGTATCGTGGCAAGCGGCAGAGGGCC 350
|||||.||||||||.||.|||||.||||||||.||.||||||.|.||.||
RBAM_018250__ 301 CACGACCTGAATATAGGGACATACTGTATCGTCGCCAGCGGCCGGGGACC 350
BSNT_04398___ 351 GTCTAACAGAGAAGTGGATCAGGTCGTAGATGCGGTTCAGGAAATTAAAG 400
|||.|||||||||||||||||.||.||.|||||.||..|.||||||||||
RBAM_018250__ 351 GTCAAACAGAGAAGTGGATCAAGTTGTTGATGCTGTCAAAGAAATTAAAG 400
BSNT_04398___ 401 AGACGTATGGACTGAAGGTTTGTGCGTGTCTCGGACTGTTGAAGCCAGAG 450
|.|||||.||..|.||..|.||.||.||.|||||.|||.|||||||.||.
RBAM_018250__ 401 AAACGTACGGTTTAAAAATCTGCGCATGCCTCGGTCTGCTGAAGCCGGAA 450
BSNT_04398___ 451 CAGGCGAAGCGGCTCAAAGATGCCGGAGTAGACCGCTATAATCATAATTT 500
|||||..|||||||.|||.|.||.|||||||||||.||.||||||||..|
RBAM_018250__ 451 CAGGCAGAGCGGCTGAAACAGGCAGGAGTAGACCGGTACAATCATAACAT 500
BSNT_04398___ 501 GAATACGTCACAGAGGAACCATTCAAACATCACGACCTCACATACATACG 550
.|||||.||.||.||.||.||.||||||||.||||||||.||.||.||.|
RBAM_018250__ 501 CAATACATCCCAAAGAAATCACTCAAACATTACGACCTCCCACACGTATG 550
BSNT_04398___ 551 ATGACAGAGTCAATACGGTTGAAATCGCAAAAGAATCGGGGCTGTCTCCG 600
|.|||||.||||||||.||.||||..||.|||.||||||||.||||.||.
RBAM_018250__ 551 ACGACAGGGTCAATACAGTGGAAACGGCGAAACAATCGGGGATGTCACCT 600
BSNT_04398___ 601 TGTTCAGGCGCCATTATCGGGATTAAGGAGACGAAACAGGATGTCATTGA 650
|||||.||.|.|||..||||.||.||.||||||||||||||.||||||||
RBAM_018250__ 601 TGTTCTGGTGTCATCGTCGGCATGAAAGAGACGAAACAGGACGTCATTGA 650
BSNT_04398___ 651 CATCGCCAAAAGCTTGAAGGCCCTTGACGCGGATTCCATTCCTGTGAATT 700
.||.||.||.|||||.||.||.||||||||.||...|||.||.||.||||
RBAM_018250__ 651 TATGGCGAACAGCTTAAAAGCGCTTGACGCCGACAGCATCCCGGTTAATT 700
BSNT_04398___ 701 TTTTGCATGCAATTGATGGCACGCCGTTAGAAGGCGTCAACGAATTAAAC 750
||.|||||||.|||||.||.||.|||||||||||.||.|.|||||||.|.
RBAM_018250__ 701 TTCTGCATGCGATTGACGGAACTCCGTTAGAAGGGGTAAGCGAATTACAT 750
BSNT_04398___ 751 CCGCTGTATTGTTTAAAAGTGCTGGCGCTGTTCCGTTTTATCAATCCATC 800
|||.|||||||..|.||||||||.||..|||||||||||||||||||.||
RBAM_018250__ 751 CCGGTGTATTGCCTGAAAGTGCTCGCCTTGTTCCGTTTTATCAATCCGTC 800
BSNT_04398___ 801 AAAAGAAATTCGCATTTCCGGAGGAAGAGAGGTCAATCTCCGCTCATTGC 850
|||||||||.||.||.||.|||||..|.||.|||||.||.||.||..|||
RBAM_018250__ 801 AAAAGAAATCCGTATCTCAGGAGGCCGGGAAGTCAACCTTCGTTCGCTGC 850
BSNT_04398___ 851 AGCCATTAGGGCTTTACGCCGCAAACTCCATTTTTGTCGGAGACTACTTA 900
||||..|.||.||||||||||||||.||.|||||.||||||||.||||||
RBAM_018250__ 851 AGCCGCTGGGACTTTACGCCGCAAATTCGATTTTCGTCGGAGATTACTTA 900
BSNT_04398___ 901 ACAACTGCCGGGCAAGAGGAGACGGAGGATCATAAAATGCTGAGTGATTT 950
||.||.||.|||||..|.||.||.|||||||||.|||||||...||||||
RBAM_018250__ 901 ACGACAGCAGGGCAGCAAGAAACAGAGGATCATCAAATGCTCCATGATTT 950
BSNT_04398___ 951 AGGCTTTGAAGTTGAATCAGTCGAAGAAATGAA----GGCCAGTTTAAGT 996
|||.||||||||.|||||.||.||||||||||| |||| |
RBAM_018250__ 951 AGGTTTTGAAGTCGAATCCGTTGAAGAAATGAAAGCCGGCC--------T 992
BSNT_04398___ 997 GC---------GAAAAGCTGA------- 1008
|| |.||..|.||
RBAM_018250__ 993 GCAATCCGCCTGCAATACGGAGGTATAA 1020
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