Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05965 and RBAM_018210
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:28
# Commandline: needle
# -asequence dna-align/BSNT_05965___scoB.1.9828.seq
# -bsequence dna-align/RBAM_018210___scoB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05965___scoB-RBAM_018210___scoB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05965___scoB-RBAM_018210___scoB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05965___scoB
# 2: RBAM_018210___scoB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 683
# Identity: 503/683 (73.6%)
# Similarity: 503/683 (73.6%)
# Gaps: 52/683 ( 7.6%)
# Score: 1884.0
#
#
#=======================================
BSNT_05965___ 1 GTGA-AGGAAGCGAGAAAACGAATGGTCAAACGGGCTGTACAAGAAATCA 49
.||| ||..||| ||||||||||||.||||||||||||||.|.|||||.|
RBAM_018210__ 1 ATGAGAGATAGC-AGAAAACGAATGATCAAACGGGCTGTAAAGGAAATTA 49
BSNT_05965___ 50 AGGACGGCATGAATGTGAATCTCGGGATTGGAATGCCGACGCTTGTCACA 99
|||||||.|||||||||||..|.|||||.||.||||||||||||||..|.
RBAM_018210__ 50 AGGACGGAATGAATGTGAACTTGGGGATAGGGATGCCGACGCTTGTAGCC 99
BSNT_05965___ 100 AATGAGATACCCGATGGCGTTCACGTCATGCTTCAGTCGGAAAACGGCTT 149
|||||||||||..|||....|.|||||.||||||||||.|||||||||||
RBAM_018210__ 100 AATGAGATACCGAATGATTATAACGTCCTGCTTCAGTCTGAAAACGGCTT 149
BSNT_05965___ 150 GCTCGGAATTGGCCCCTATCCTCTGGAAGGAACGGAAGACGCGGATTTGA 199
||||||.||.||.||.|||||...||||||||||||.|||.|.|||.|||
RBAM_018210__ 150 GCTCGGGATCGGGCCTTATCCGGCGGAAGGAACGGAGGACCCCGATCTGA 199
BSNT_05965___ 200 TCAATGCGGGAAAGGAAACGATCACTGAAGTGACCGGCGCCTCTTATTTT 249
||||.||||||||.|||||.|||||.|||||.|..||.|||||.||||||
RBAM_018210__ 200 TCAACGCGGGAAAAGAAACCATCACCGAAGTAAAGGGAGCCTCGTATTTT 249
BSNT_05965___ 250 GACAGCGCTGAGTCATTCGCGATGATAAGAGGCGGGCATATCGATTTGGC 299
|||||.||.||.||.||.||.|||||..|.|||||.||.||.|||.|.||
RBAM_018210__ 250 GACAGTGCCGAATCCTTTGCCATGATTCGCGGCGGCCACATTGATGTAGC 299
BSNT_05965___ 300 TATTCTCGGCGGAATGGAGGTTTCGGAGCAGGGGGATTTGGCCAATTGGA 349
.||.||||||||.|||||.||.||.||.|.|||.||||||||.||.||||
RBAM_018210__ 300 GATCCTCGGCGGGATGGAAGTGTCCGAACGGGGAGATTTGGCGAACTGGA 349
BSNT_05965___ 350 TGATCCCGGGCAAAATGGTAAAAGGGATGGGCGGCGCCATGGATCTCGTC 399
|||||||.||.||||||.|.|||||.|||||||||||.|||||.||.||.
RBAM_018210__ 350 TGATCCCCGGAAAAATGATCAAAGGAATGGGCGGCGCAATGGACCTAGTT 399
BSNT_05965___ 400 AACGGGGCGAAACGAATCGTTGTCATCATGGATCACGTCAATAAGCATGG 449
.||||.||.|||||.||..|||||||.|||||.|||||.|||||..||||
RBAM_018210__ 400 CACGGAGCAAAACGGATTATTGTCATTATGGAGCACGTTAATAAATATGG 449
BSNT_05965___ 450 TGAAT-TAAAGGTGAAAA---AA---ACATGCTCCCTTCCGCTGACAGGC 492
.|||| |||| ||||.|| || || |||.|||| |.||.|||
RBAM_018210__ 450 GGAATCTAAA-GTGAGAACGGAATGTAC--GCTGCCTT----TAACCGGC 492
BSNT_05965___ 493 CAGAAAGTCGTGCACAGGCTGATTACGGATTTGGCTGTATTTGATTTT-G 541
..|.|.||.||..|..|||||||.||.||||||||||||||.|||||| .
RBAM_018210__ 493 AGGCAGGTGGTCGATCGGCTGATCACAGATTTGGCTGTATTCGATTTTCA 542
BSNT_05965___ 542 TGAACGGCCGCATGACACTGACGGAGCTTCAGGATGGTGTCACAATTGAA 591
|| |.|||||.|||||.||.||.||.||.|||||.|||||.|||||.||.
RBAM_018210__ 543 TG-ATGGCCGTATGACGCTCACCGAACTGCAGGAAGGTGTAACAATGGAG 591
BSNT_05965___ 592 GAGGTTTATGAAAAAACAGAAGCTGATTTCGCTGTAAGCCAGTCTGTACT 641
|||||.|.|||.||||||||||.|.||||..||||.||||||||
RBAM_018210__ 592 GAGGTCTTTGAGAAAACAGAAGGTCATTTTACTGTCAGCCAGTC------ 635
BSNT_05965___ 642 CAATTCTTAA----------------------- 651
.||||
RBAM_018210__ 636 -----GTTAAAAAACGGGATCAGACCAAAATGA 663
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