Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03005 and RBAM_018150
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_03005.1.9828.seq
# -bsequence dna-align/RBAM_018150___xynD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03005-RBAM_018150___xynD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03005-RBAM_018150___xynD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03005
# 2: RBAM_018150___xynD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1546
# Identity: 1106/1546 (71.5%)
# Similarity: 1106/1546 (71.5%)
# Gaps: 290/1546 (18.8%)
# Score: 4888.0
#
#
#=======================================
BSNT_03005 0 -------------------------------------------------- 0
RBAM_018150__ 1 ATGTGTAAAAAATGTTGGGTATGCCTATGGGTCCTTGCTTTATTATTGAG 50
BSNT_03005 0 -------------------------------------------------- 0
RBAM_018150__ 51 TTGCTTCACTGGGAAGTCTGCGTATGCTGCCAGCACTCCAATTGCAAAAC 100
BSNT_03005 0 -------------------------------------------------- 0
RBAM_018150__ 101 ATGTTGGGAATTCAAATCCGCTTATCGACCATCATTTGGGCGCAGATCCG 150
BSNT_03005 0 -------------------------------------------------- 0
RBAM_018150__ 151 TTTGCGCTGACCTATAATGGAAGAGTCTACATCTATATGTCAAGCGATGA 200
BSNT_03005 0 -------------------------------------------------- 0
RBAM_018150__ 201 CTATGAATATAATAGCGACGGCACGATTAAGGATAATTCATTTGCCAATT 250
BSNT_03005 1 --------------------------------ATGGTGAACTGGACAGAC 18
|||||||||||||||||.
RBAM_018150__ 251 TGAATAAAATATCCGTCATATCTTCAGCGAATATGGTGAACTGGACAGAT 300
BSNT_03005 19 CACGGAGCCATTCCAGTAGCAGGTGCCAATGGAGCT-AATGGAGGCCGTG 67
||||||.|.|||||.|.|||.||||||||||| ||| |||||.|||||.|
RBAM_018150__ 301 CACGGAACGATTCCCGCAGCGGGTGCCAATGG-GCTGAATGGCGGCCGGG 349
BSNT_03005 68 GAATTGCAAAATGGGCAGGTGCGTCATGGGCACCGTCAATCGCAGTTAAA 117
|.|||||.|||||||||||.||.||||||||.||||||..|||.||.|||
RBAM_018150__ 350 GGATTGCCAAATGGGCAGGAGCATCATGGGCCCCGTCAGCCGCGGTGAAA 399
BSNT_03005 118 AAAATTAATGGCAAGGATAAATTCTTCCTTTATTTCGCAAACAGCGGCGG 167
||.||.|||||.|||||||||||.||||||||||||||||||.|||||||
RBAM_018150__ 400 AAGATCAATGGTAAGGATAAATTTTTCCTTTATTTCGCAAACGGCGGCGG 449
BSNT_03005 168 AGGTATCGGGGTTCTCACCGCAGACAGCCCGATTGGTCCATGGACCGACC 217
||||||||||||||||||||||||||||||||..||.||||||||.||.|
RBAM_018150__ 450 AGGTATCGGGGTTCTCACCGCAGACAGCCCGACCGGCCCATGGACAGATC 499
BSNT_03005 218 CAATCGGAAAACCGCTCGTAACGCCAAGTACGCCAGGAATGTCTGGTGTT 267
|.|||||||||.||||.||||||||||.|||||||||||||||.||||||
RBAM_018150__ 500 CGATCGGAAAAGCGCTGGTAACGCCAAATACGCCAGGAATGTCCGGTGTT 549
BSNT_03005 268 GTATGGCTTTTTGATCCGGCAGTATTTGTAAATGACGACGGCACCGGTTA 317
||||||||||||||||||||||||||.|||.||||.|||||.||||||||
RBAM_018150__ 550 GTATGGCTTTTTGATCCGGCAGTATTCGTAGATGATGACGGTACCGGTTA 599
BSNT_03005 318 CCTGTATGCTGGCGGAGGCGTTCCTGGCGGTTCAAATCCAACGCAGGGAC 367
|||.|||||.||||||||||||||.||||||||||||||..|.|||||.|
RBAM_018150__ 600 CCTATATGCCGGCGGAGGCGTTCCGGGCGGTTCAAATCCCGCACAGGGGC 649
BSNT_03005 368 AATGGGCCAATCCTAAAACGGCTAGAGTCATAAAATTGGGGCCTGATATG 417
|||||||||||||||||||.||.||||||||.|||||.||.|||||||||
RBAM_018150__ 650 AATGGGCCAATCCTAAAACAGCAAGAGTCATGAAATTAGGTCCTGATATG 699
BSNT_03005 418 ACGAGTGTTGTTGGAAGTGCATCTACAATTGATGCGCCTTTCATGTTTGA 467
||.|||||||..||||.|||.|||||.||||||||||||||.||||||||
RBAM_018150__ 700 ACCAGTGTTGCCGGAAATGCGTCTACGATTGATGCGCCTTTTATGTTTGA 749
BSNT_03005 468 AGATTCGGGATTGCACAAGTATAACGGAACATATTATTACTCCTATTGCA 517
||||||||||.||||.|||||||||||||.||||||.||.||||||||.|
RBAM_018150__ 750 AGATTCGGGAATGCATAAGTATAACGGAAAATATTACTATTCCTATTGTA 799
BSNT_03005 518 TTAATTTCGGCGGCACGCACCCGGCCGATAAACCCCCGGGTGAGATCGGC 567
|.||||||||.|||.|||||||||||||||||||.||.|||||||||||.
RBAM_018150__ 800 TCAATTTCGGGGGCGCGCACCCGGCCGATAAACCTCCAGGTGAGATCGGT 849
BSNT_03005 568 TACATGACCAGTTCAAATCCCATGGGTCCCTTTACATATAGAGGGCATTT 617
||.||||||||.||||.|||.||||.|.|.|||.|.|||||||||||.||
RBAM_018150__ 850 TATATGACCAGCTCAAGTCCTATGGATTCTTTTTCGTATAGAGGGCACTT 899
BSNT_03005 618 CCTGAAAAATCCGGGTGCATTTTTCGGAGGTGGCGGAAACAATCATCATG 667
.||||||||||||||.||||||||||||||.|||||.|||||||||||||
RBAM_018150__ 900 TCTGAAAAATCCGGGAGCATTTTTCGGAGGCGGCGGGAACAATCATCATG 949
BSNT_03005 668 CTGTTTTCAATTTTAAAAACGAGTGGTATGTGGTGTACCACGCGCAAACT 717
|||||||||||||||||||||||||||||||||||||.||..|.||||||
RBAM_018150__ 950 CTGTTTTCAATTTTAAAAACGAGTGGTATGTGGTGTATCATACTCAAACT 999
BSNT_03005 718 GTCAGTTCCGCTCTGTTCGGGGCCGGCAAAGGATACCGTTCTCCCCATAT 767
|||||.||||||||.|.|||||||||||||||.|||||||||||||||||
RBAM_018150__ 1000 GTCAGCTCCGCTCTTTACGGGGCCGGCAAAGGTTACCGTTCTCCCCATAT 1049
BSNT_03005 768 TAATAAGCTGGTGCATAACCCAGATGGATCCATCCAAGAGGTAGCAGCAA 817
|||||||||.||||||||.||||||||.|||.|.|||||||||||.||||
RBAM_018150__ 1050 TAATAAGCTTGTGCATAATCCAGATGGCTCCCTGCAAGAGGTAGCGGCAA 1099
BSNT_03005 818 ATTATGCAGGTGTAACACAGCTTTCCAATTTGAATCCTTATAACCGGGTA 867
|||.|||||||||.|.||||||.||||||||||||||.|||.||||.|||
RBAM_018150__ 1100 ATTTTGCAGGTGTCAAACAGCTATCCAATTTGAATCCATATCACCGCGTA 1149
BSNT_03005 868 GAAGCTGAAACGTTTGCTTGGAATGGACGCATTTTGACAGAGAAGTCCAC 917
|||||.|||||||||||.|||||.|||||.||||||||||||...|||.|
RBAM_018150__ 1150 GAAGCGGAAACGTTTGCCTGGAACGGACGGATTTTGACAGAGGCATCCTC 1199
BSNT_03005 918 AGCACCCGGCGGGCCAGTAAATAATCAGCATGTAACAAGCATTCAAAATG 967
||||||||||||.||.||.||||||||.|||||.||||.||||||.||.|
RBAM_018150__ 1200 AGCACCCGGCGGCCCGGTCAATAATCAACATGTCACAAACATTCATAACG 1249
BSNT_03005 968 GAGACTGGATTGCTGTAGGAAATGCAGACTTCGGAGCGGGCGGTGCCAGG 1017
||||||||||||||||.|||||||||||||||||..|.||||||||||||
RBAM_018150__ 1250 GAGACTGGATTGCTGTTGGAAATGCAGACTTCGGCTCAGGCGGTGCCAGG 1299
BSNT_03005 1018 TCATTTAAAGCAAATGTAGCATCCACTTCAGGTTCAGGCGGGAAAATAGA 1067
.|.|||||||||||||||||.|||.|| .|| ||||||||||||||
RBAM_018150__ 1300 ACGTTTAAAGCAAATGTAGCGTCCGCT----CTT--GGCGGGAAAATAGA 1343
BSNT_03005 1068 AGTGCGCCTCGACAGTGCTGATGGTAAGCTTGTTGGAACTCTGAATGTGC 1117
||||||.||.||||||||..|.|||||||||||.|||||..|||||||.|
RBAM_018150__ 1344 AGTGCGGCTAGACAGTGCAAACGGTAAGCTTGTCGGAACCTTGAATGTCC 1393
BSNT_03005 1118 CTTCAACAGGCGGAGCGCAAACGTGGAGAGAAATAGAAACTGCAGTAAGC 1167
||||.|||||||||.|||||.|.||||||||||||||||||||.||||||
RBAM_018150__ 1394 CTTCCACAGGCGGAACGCAATCTTGGAGAGAAATAGAAACTGCGGTAAGC 1443
BSNT_03005 1168 GGGGCAACAGGTGTGCACAAAGTATTCTTTGTATTTACCGGAACAGGTAC 1217
||.|||.|.|||||.|||||.|||||||||||||||||||||||.|||||
RBAM_018150__ 1444 GGCGCATCCGGTGTTCACAACGTATTCTTTGTATTTACCGGAACTGGTAC 1493
BSNT_03005 1218 AGGAAACTTGTTTCATTTTGATTACTGGCAGTTTACGCAAAGATAG 1263
|||||||||||||.||||||||||||||||||||||.||||||||.
RBAM_018150__ 1494 AGGAAACTTGTTTAATTTTGATTACTGGCAGTTTACACAAAGATAA 1539
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