Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03004 and RBAM_018140

See Amino acid alignment / Visit BSNT_03004 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:52
# Commandline: needle
#    -asequence dna-align/BSNT_03004___ynfF.1.9828.seq
#    -bsequence dna-align/RBAM_018140___ynfF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03004___ynfF-RBAM_018140___ynfF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03004___ynfF-RBAM_018140___ynfF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03004___ynfF
# 2: RBAM_018140___ynfF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1274
# Identity:    1109/1274 (87.0%)
# Similarity:  1109/1274 (87.0%)
# Gaps:           7/1274 ( 0.5%)
# Score: 4862.0
# 
#
#=======================================

BSNT_03004___      1 ATGAT-TCCACGCATAAAAAAAACAATTTGTGTACTATTAGTATGTTTCA     49
                     ||||| ||.| ||.||||||||||||||||||||.||||.||||||||||
RBAM_018140__      1 ATGATGTCGA-GCGTAAAAAAAACAATTTGTGTATTATTGGTATGTTTCA     49

BSNT_03004___     50 CTATGCTGTCAGTCATG---TTAGGGCCAGGCGCTACTGAAGTTTTGGCA     96
                     |.||||||||.||||||   |||||.||.||.|.|||||||||||..|||
RBAM_018140__     50 CAATGCTGTCCGTCATGCTCTTAGGACCGGGAGTTACTGAAGTTTCAGCA     99

BSNT_03004___     97 GCCAGTGATGTAACAGTTAATGTATCTGCAGAGAAACAAGTGATTCGCGG    146
                     ||.|||||||.||||||||||.||||||||||.|.|||||||||||||||
RBAM_018140__    100 GCAAGTGATGCAACAGTTAATATATCTGCAGAAAGACAAGTGATTCGCGG    149

BSNT_03004___    147 TTTTGGAGGGATGAACCATCCGGCTTGGGCTGGGGATCTT-ACAGCAGCT    195
                     |||||||||.||||||||.|||||||||..|||.|| ||| ||.||.|||
RBAM_018140__    150 TTTTGGAGGAATGAACCACCCGGCTTGGATTGGAGA-CTTGACTGCGGCT    198

BSNT_03004___    196 CAAAGAGAAACTGCTTTTGGCAATGAACAGAACCAGTTAGGATTTTCAAT    245
                     |||.|.||.||.|||||||||||||.||||||.||||||||.|||||..|
RBAM_018140__    199 CAACGGGAGACCGCTTTTGGCAATGGACAGAATCAGTTAGGTTTTTCGGT    248

BSNT_03004___    246 CTTAAGAATTCATGTAGATGAAAATCGAAATAATTGGTATAAAGAGGTGG    295
                     |||||||||||||||||||||||||.|||||||||||||.||.||.||||
RBAM_018140__    249 CTTAAGAATTCATGTAGATGAAAATAGAAATAATTGGTACAAGGAAGTGG    298

BSNT_03004___    296 AGACTGCCAAGAGTGCGGTCAAACATGGGGCAATCGTTTTTGCATCTCCC    345
                     |||||||.|||||||||.||||||||||.||||||||||||||.||.||.
RBAM_018140__    299 AGACTGCAAAGAGTGCGATCAAACATGGAGCAATCGTTTTTGCTTCCCCT    348

BSNT_03004___    346 TGGAATCCTCCAAGTGATATGGTTGAGACCTTCAATCGGAATGGTGACAC    395
                     ||||||||.||||..||||||||||||||.|||||||..|||||||||||
RBAM_018140__    349 TGGAATCCGCCAAACGATATGGTTGAGACTTTCAATCATAATGGTGACAC    398

BSNT_03004___    396 ATCAGCTAAGCGGCTGAAATACGATAAGTACGCCGCATACGCGCAGCATC    445
                     |.|||||||||||||||.||||||||||||||||||||||||||||||||
RBAM_018140__    399 AACAGCTAAGCGGCTGAGATACGATAAGTACGCCGCATACGCGCAGCATC    448

BSNT_03004___    446 TTAACGATTTTGTTACCTTCATGAAAAATAATGGTGTGAATCTTTATGCG    495
                     ||||||||||.||||..||||||||||.|||||||||||||||.||||||
RBAM_018140__    449 TTAACGATTTCGTTAATTTCATGAAAAGTAATGGTGTGAATCTGTATGCG    498

BSNT_03004___    496 ATTTCGGTCCAAAACGAGCCTGATTACGCTCACGAGTGGACGTGGTGGAC    545
                     |||||..|.||||||||||||||||||||||||||.|||||.||||||||
RBAM_018140__    499 ATTTCTATGCAAAACGAGCCTGATTACGCTCACGAATGGACATGGTGGAC    548

BSNT_03004___    546 GCCGCAAGAAATACTTCGCTTTATGAGAGAAAACGCCGGCTCGATCAATG    595
                     |||.||||||||.||.||.||.||||||||.||.|||||.||.||.||||
RBAM_018140__    549 GCCCCAAGAAATCCTGCGTTTCATGAGAGAGAATGCCGGTTCCATTAATG    598

BSNT_03004___    596 CCCGCGTCATTGCACCTGAGTCTTTTCAATACTTAAAGAATTTGTCGGAC    645
                     |.||.||.|||||.||.||.||.|||||||||.|.||.|||.|.||||||
RBAM_018140__    599 CTCGTGTGATTGCGCCGGAATCATTTCAATACCTGAAAAATATATCGGAC    648

BSNT_03004___    646 CCGATCTTGAACGATCCGCAGGCTCTTGCCAATATGGATATTCTCGGAAC    695
                     ||.||.|||||||||||||||||.|||...|||||||||||.||||||||
RBAM_018140__    649 CCCATTTTGAACGATCCGCAGGCGCTTAGGAATATGGATATCCTCGGAAC    698

BSNT_03004___    696 TCACCTGTACGGCACCCAGGTCAGCCAATTCCCTTATCCTCTTTTCAAAC    745
                     .||||||||||||||.||||||||.||.||.|||||||||||||||||||
RBAM_018140__    699 CCACCTGTACGGCACTCAGGTCAGTCAGTTTCCTTATCCTCTTTTCAAAC    748

BSNT_03004___    746 AAAAAGGAGCGGGGAAGGACCTTTGGATGACGGAAGTATACTATCCAAAC    795
                     |||||||||..|||||.||.||.|||||||||||.|||||||||||.||.
RBAM_018140__    749 AAAAAGGAGGAGGGAAAGAGCTATGGATGACGGAGGTATACTATCCGAAT    798

BSNT_03004___    796 AGTGATAACAACTCGGCGGATCGATGGCCTGAGGCATTGGATGTTTCACA    845
                     |||||.|||||.||.||||||||.|||||||||||.||.|.|||||||.|
RBAM_018140__    799 AGTGACAACAATTCAGCGGATCGCTGGCCTGAGGCTTTAGGTGTTTCAGA    848

BSNT_03004___    846 GCATATTCACAATGCGATGGTAGAGGGGGACTTTCAAGCTTATGTATGGT    895
                     |||||||||..||.|.|||||||||||.||.|||||||||||.||.||||
RBAM_018140__    849 GCATATTCATCATTCAATGGTAGAGGGAGATTTTCAAGCTTACGTGTGGT    898

BSNT_03004___    896 GGTACATCCGAAGATCATATGGACCTATGAAAGAAGATGGTACGATCAGC    945
                     ||||||||||.||||||||.||.|||||||||||||||||.|.|||||||
RBAM_018140__    899 GGTACATCCGCAGATCATACGGCCCTATGAAAGAAGATGGGATGATCAGC    948

BSNT_03004___    946 AAACGCGGCTACAATATGGCTCATTTCTCAAAGTTTGTGCGTCCCGGCTA    995
                     ||||||||.|||||||||||||||||||||||.||||||||.||.|||||
RBAM_018140__    949 AAACGCGGATACAATATGGCTCATTTCTCAAAATTTGTGCGCCCTGGCTA    998

BSNT_03004___    996 TGTAAGGATTGATGCAACGAAAAACCCTAATGCGAACGTTTACGTGTCAG   1045
                     ||||||||||||||||||||||||.|||.|..||||.|||||||||||||
RBAM_018140__    999 TGTAAGGATTGATGCAACGAAAAATCCTGAACCGAATGTTTACGTGTCAG   1048

BSNT_03004___   1046 CCTATAAAGGTGACAACAAGGTCGTTATTGTTGCCATCAATAAAAGCAAC   1095
                     ||||||||||.|||||.||||||||.|||||||||||.|||||||..|||
RBAM_018140__   1049 CCTATAAAGGAGACAATAAGGTCGTGATTGTTGCCATTAATAAAAATAAC   1098

BSNT_03004___   1096 ACAGGAGTCAACCAAAACTTTGTTTTGCAGAATGGATCTGCTTCAAACGT   1145
                     |||||.||||||||||||||.||.||||||||||||.|||||||..|.||
RBAM_018140__   1099 ACAGGGGTCAACCAAAACTTCGTATTGCAGAATGGAACTGCTTCGCAAGT   1148

BSNT_03004___   1146 ATCTAGATGGATCACGAGCAGCAGCAGCAATCTACAACCTGGAACGAATC   1195
                     |||.|||||||||||||||||||||||||||||.||||||||||||.|||
RBAM_018140__   1149 ATCCAGATGGATCACGAGCAGCAGCAGCAATCTTCAACCTGGAACGGATC   1198

BSNT_03004___   1196 TCACTGTATCAGGCAATCATTTTTGGGCCCATCTTCCAGCTCAAAGCGTA   1245
                     |||..|||.|.|.|||||||||||||||||||||.||.|||||||||||.
RBAM_018140__   1199 TCAAAGTAACGGACAATCATTTTTGGGCCCATCTGCCGGCTCAAAGCGTG   1248

BSNT_03004___   1246 ACAACATTTGTTGTAAATCGTTAA   1269
                     |||||||||||||||||.||||||
RBAM_018140__   1249 ACAACATTTGTTGTAAAGCGTTAA   1272


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