Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03004 and RBAM_018140
See
Amino acid alignment /
Visit
BSNT_03004 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_03004___ynfF.1.9828.seq
# -bsequence dna-align/RBAM_018140___ynfF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03004___ynfF-RBAM_018140___ynfF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03004___ynfF-RBAM_018140___ynfF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03004___ynfF
# 2: RBAM_018140___ynfF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1274
# Identity: 1109/1274 (87.0%)
# Similarity: 1109/1274 (87.0%)
# Gaps: 7/1274 ( 0.5%)
# Score: 4862.0
#
#
#=======================================
BSNT_03004___ 1 ATGAT-TCCACGCATAAAAAAAACAATTTGTGTACTATTAGTATGTTTCA 49
||||| ||.| ||.||||||||||||||||||||.||||.||||||||||
RBAM_018140__ 1 ATGATGTCGA-GCGTAAAAAAAACAATTTGTGTATTATTGGTATGTTTCA 49
BSNT_03004___ 50 CTATGCTGTCAGTCATG---TTAGGGCCAGGCGCTACTGAAGTTTTGGCA 96
|.||||||||.|||||| |||||.||.||.|.|||||||||||..|||
RBAM_018140__ 50 CAATGCTGTCCGTCATGCTCTTAGGACCGGGAGTTACTGAAGTTTCAGCA 99
BSNT_03004___ 97 GCCAGTGATGTAACAGTTAATGTATCTGCAGAGAAACAAGTGATTCGCGG 146
||.|||||||.||||||||||.||||||||||.|.|||||||||||||||
RBAM_018140__ 100 GCAAGTGATGCAACAGTTAATATATCTGCAGAAAGACAAGTGATTCGCGG 149
BSNT_03004___ 147 TTTTGGAGGGATGAACCATCCGGCTTGGGCTGGGGATCTT-ACAGCAGCT 195
|||||||||.||||||||.|||||||||..|||.|| ||| ||.||.|||
RBAM_018140__ 150 TTTTGGAGGAATGAACCACCCGGCTTGGATTGGAGA-CTTGACTGCGGCT 198
BSNT_03004___ 196 CAAAGAGAAACTGCTTTTGGCAATGAACAGAACCAGTTAGGATTTTCAAT 245
|||.|.||.||.|||||||||||||.||||||.||||||||.|||||..|
RBAM_018140__ 199 CAACGGGAGACCGCTTTTGGCAATGGACAGAATCAGTTAGGTTTTTCGGT 248
BSNT_03004___ 246 CTTAAGAATTCATGTAGATGAAAATCGAAATAATTGGTATAAAGAGGTGG 295
|||||||||||||||||||||||||.|||||||||||||.||.||.||||
RBAM_018140__ 249 CTTAAGAATTCATGTAGATGAAAATAGAAATAATTGGTACAAGGAAGTGG 298
BSNT_03004___ 296 AGACTGCCAAGAGTGCGGTCAAACATGGGGCAATCGTTTTTGCATCTCCC 345
|||||||.|||||||||.||||||||||.||||||||||||||.||.||.
RBAM_018140__ 299 AGACTGCAAAGAGTGCGATCAAACATGGAGCAATCGTTTTTGCTTCCCCT 348
BSNT_03004___ 346 TGGAATCCTCCAAGTGATATGGTTGAGACCTTCAATCGGAATGGTGACAC 395
||||||||.||||..||||||||||||||.|||||||..|||||||||||
RBAM_018140__ 349 TGGAATCCGCCAAACGATATGGTTGAGACTTTCAATCATAATGGTGACAC 398
BSNT_03004___ 396 ATCAGCTAAGCGGCTGAAATACGATAAGTACGCCGCATACGCGCAGCATC 445
|.|||||||||||||||.||||||||||||||||||||||||||||||||
RBAM_018140__ 399 AACAGCTAAGCGGCTGAGATACGATAAGTACGCCGCATACGCGCAGCATC 448
BSNT_03004___ 446 TTAACGATTTTGTTACCTTCATGAAAAATAATGGTGTGAATCTTTATGCG 495
||||||||||.||||..||||||||||.|||||||||||||||.||||||
RBAM_018140__ 449 TTAACGATTTCGTTAATTTCATGAAAAGTAATGGTGTGAATCTGTATGCG 498
BSNT_03004___ 496 ATTTCGGTCCAAAACGAGCCTGATTACGCTCACGAGTGGACGTGGTGGAC 545
|||||..|.||||||||||||||||||||||||||.|||||.||||||||
RBAM_018140__ 499 ATTTCTATGCAAAACGAGCCTGATTACGCTCACGAATGGACATGGTGGAC 548
BSNT_03004___ 546 GCCGCAAGAAATACTTCGCTTTATGAGAGAAAACGCCGGCTCGATCAATG 595
|||.||||||||.||.||.||.||||||||.||.|||||.||.||.||||
RBAM_018140__ 549 GCCCCAAGAAATCCTGCGTTTCATGAGAGAGAATGCCGGTTCCATTAATG 598
BSNT_03004___ 596 CCCGCGTCATTGCACCTGAGTCTTTTCAATACTTAAAGAATTTGTCGGAC 645
|.||.||.|||||.||.||.||.|||||||||.|.||.|||.|.||||||
RBAM_018140__ 599 CTCGTGTGATTGCGCCGGAATCATTTCAATACCTGAAAAATATATCGGAC 648
BSNT_03004___ 646 CCGATCTTGAACGATCCGCAGGCTCTTGCCAATATGGATATTCTCGGAAC 695
||.||.|||||||||||||||||.|||...|||||||||||.||||||||
RBAM_018140__ 649 CCCATTTTGAACGATCCGCAGGCGCTTAGGAATATGGATATCCTCGGAAC 698
BSNT_03004___ 696 TCACCTGTACGGCACCCAGGTCAGCCAATTCCCTTATCCTCTTTTCAAAC 745
.||||||||||||||.||||||||.||.||.|||||||||||||||||||
RBAM_018140__ 699 CCACCTGTACGGCACTCAGGTCAGTCAGTTTCCTTATCCTCTTTTCAAAC 748
BSNT_03004___ 746 AAAAAGGAGCGGGGAAGGACCTTTGGATGACGGAAGTATACTATCCAAAC 795
|||||||||..|||||.||.||.|||||||||||.|||||||||||.||.
RBAM_018140__ 749 AAAAAGGAGGAGGGAAAGAGCTATGGATGACGGAGGTATACTATCCGAAT 798
BSNT_03004___ 796 AGTGATAACAACTCGGCGGATCGATGGCCTGAGGCATTGGATGTTTCACA 845
|||||.|||||.||.||||||||.|||||||||||.||.|.|||||||.|
RBAM_018140__ 799 AGTGACAACAATTCAGCGGATCGCTGGCCTGAGGCTTTAGGTGTTTCAGA 848
BSNT_03004___ 846 GCATATTCACAATGCGATGGTAGAGGGGGACTTTCAAGCTTATGTATGGT 895
|||||||||..||.|.|||||||||||.||.|||||||||||.||.||||
RBAM_018140__ 849 GCATATTCATCATTCAATGGTAGAGGGAGATTTTCAAGCTTACGTGTGGT 898
BSNT_03004___ 896 GGTACATCCGAAGATCATATGGACCTATGAAAGAAGATGGTACGATCAGC 945
||||||||||.||||||||.||.|||||||||||||||||.|.|||||||
RBAM_018140__ 899 GGTACATCCGCAGATCATACGGCCCTATGAAAGAAGATGGGATGATCAGC 948
BSNT_03004___ 946 AAACGCGGCTACAATATGGCTCATTTCTCAAAGTTTGTGCGTCCCGGCTA 995
||||||||.|||||||||||||||||||||||.||||||||.||.|||||
RBAM_018140__ 949 AAACGCGGATACAATATGGCTCATTTCTCAAAATTTGTGCGCCCTGGCTA 998
BSNT_03004___ 996 TGTAAGGATTGATGCAACGAAAAACCCTAATGCGAACGTTTACGTGTCAG 1045
||||||||||||||||||||||||.|||.|..||||.|||||||||||||
RBAM_018140__ 999 TGTAAGGATTGATGCAACGAAAAATCCTGAACCGAATGTTTACGTGTCAG 1048
BSNT_03004___ 1046 CCTATAAAGGTGACAACAAGGTCGTTATTGTTGCCATCAATAAAAGCAAC 1095
||||||||||.|||||.||||||||.|||||||||||.|||||||..|||
RBAM_018140__ 1049 CCTATAAAGGAGACAATAAGGTCGTGATTGTTGCCATTAATAAAAATAAC 1098
BSNT_03004___ 1096 ACAGGAGTCAACCAAAACTTTGTTTTGCAGAATGGATCTGCTTCAAACGT 1145
|||||.||||||||||||||.||.||||||||||||.|||||||..|.||
RBAM_018140__ 1099 ACAGGGGTCAACCAAAACTTCGTATTGCAGAATGGAACTGCTTCGCAAGT 1148
BSNT_03004___ 1146 ATCTAGATGGATCACGAGCAGCAGCAGCAATCTACAACCTGGAACGAATC 1195
|||.|||||||||||||||||||||||||||||.||||||||||||.|||
RBAM_018140__ 1149 ATCCAGATGGATCACGAGCAGCAGCAGCAATCTTCAACCTGGAACGGATC 1198
BSNT_03004___ 1196 TCACTGTATCAGGCAATCATTTTTGGGCCCATCTTCCAGCTCAAAGCGTA 1245
|||..|||.|.|.|||||||||||||||||||||.||.|||||||||||.
RBAM_018140__ 1199 TCAAAGTAACGGACAATCATTTTTGGGCCCATCTGCCGGCTCAAAGCGTG 1248
BSNT_03004___ 1246 ACAACATTTGTTGTAAATCGTTAA 1269
|||||||||||||||||.||||||
RBAM_018140__ 1249 ACAACATTTGTTGTAAAGCGTTAA 1272
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.