Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02943 and RBAM_018020

See Amino acid alignment / Visit BSNT_02943 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence dna-align/BSNT_02943___yndG.1.9828.seq
#    -bsequence dna-align/RBAM_018020___yndG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02943___yndG-RBAM_018020___yndG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02943___yndG-RBAM_018020___yndG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02943___yndG
# 2: RBAM_018020___yndG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 870
# Identity:     575/870 (66.1%)
# Similarity:   575/870 (66.1%)
# Gaps:         117/870 (13.4%)
# Score: 1793.5
# 
#
#=======================================

BSNT_02943___      1 GTGAGGCAGAAACCGATTTATGTAGAAATCGAAATGAAATCTGATCTGGA     50
                     .|||.||||||.|||||.|||||.||||||.|.||...|||||||.|.||
RBAM_018020__      1 ATGAAGCAGAAGCCGATATATGTCGAAATCAATATTGCATCTGATATAGA     50

BSNT_02943___     51 TACACTCTGGGAATATACACAAAACC--CATCACTGCATAAGGAATGGGA     98
                     .||.||.|||||||||||.|||||||  |||  ||.||||||||||||||
RBAM_018020__     51 AACGCTTTGGGAATATACGCAAAACCCGCAT--CTTCATAAGGAATGGGA     98

BSNT_02943___     99 TCTCCGGTTTTCAAATATTACGTATTTGAATAGTCAGCCATGCGAAAAAC    148
                     |||.||.|||||..|.|||||.|||.|..||||.|.||||...|||...|
RBAM_018020__     99 TCTGCGTTTTTCTGACATTACATATCTTCATAGGCTGCCAGATGAACCGC    148

BSNT_02943___    149 AGAAGTTTCTTTACGAAACAAGGGTAGGCTTTGGATTAAAGGTGTCAGGT    198
                     |||..|||||.||.||||||.|..|.||.|||||..|.|||||.||.||.
RBAM_018020__    149 AGAGATTTCTATATGAAACACGAATCGGTTTTGGGCTGAAGGTATCCGGC    198

BSNT_02943___    199 ACAGGAGAAACCGTCCGTGTTTTCAACAAA------TGTTCATCTGAAAG    242
                     ||.||.|||.|..|..|||      |||.|      .|.||.||.|||||
RBAM_018020__    199 ACGGGCGAATCAATAGGTG------ACATAAGGCCTCGCTCGTCAGAAAG    242

BSNT_02943___    243 -GTCTTCTTCACTGGCTTTTGGCTCTGATCATCCATTATCTCTGATTCGG    291
                      || .|||||.||.|||||||.||||||||||||..|.||.||.||....
RBAM_018020__    243 AGT-GTCTTCGCTCGCTTTTGCCTCTGATCATCCGCTGTCACTTATAAAA    291

BSNT_02943___    292 CATGGAAGCGGCTACTGGAAGTATATACAGAGAGAAAATGGGAAAATGAC    341
                     .|.||.||.||||||||||||||||||.||.|.||.||.||..|||...|
RBAM_018020__    292 GAAGGCAGGGGCTACTGGAAGTATATAGAGCGGGATAACGGACAAACCGC    341

BSNT_02943___    342 GTTTTTAACACAGTACCAATACAAAACAGCCTACGGACTGCTGGGAAGAT    391
                     .|||||.||.||.||.|||||..||||.|||..|||.||||.||||||.|
RBAM_018020__    342 ATTTTTGACTCAATATCAATATGAAACGGCCCGCGGTCTGCCGGGAAGTT    391

BSNT_02943___    392 GGATTGATCGTTTATTATTTCGGCCGCTGCTTGGCTGGGCGACTGCCTGG    441
                     ||||.||.||.||.||||||||.||.|||||..|||||||.||.||.|||
RBAM_018020__    392 GGATAGACCGGTTTTTATTTCGTCCTCTGCTAAGCTGGGCTACCGCATGG    441

BSNT_02943___    442 AGCTTTGATGCATTAAGGCTTTGGGTAGAGCAAAATAAACATCCGAAGCG    491
                     |||||||||||.||..||||||||.||||.|||||.|.|||||||||  |
RBAM_018020__    442 AGCTTTGATGCGTTGCGGCTTTGGATAGAACAAAACAGACATCCGAA--G    489

BSNT_02943___    492 CT-TCATTC-------GATCTGCTATCATCTATGTGTTCATGTGTCTGTT    533
                     .| ||||||       |.|.||      |||||||.||.||||||||..|
RBAM_018020__    490 ATATCATTCCGTTTCGGGTTTG------TCTATGTCTTTATGTGTCTCGT    533

BSNT_02943___    534 TTTCAGCCTGTTTTGGTTCTATCAAGGCTTTGCAGGTGTTGAAACAAGCA    583
                     .|||||.||||.||||||.|.|||||||||| ||  ||.||      || 
RBAM_018020__    534 ATTCAGTCTGTATTGGTTTTTTCAAGGCTTT-CA--TGATG------GC-    573

BSNT_02943___    584 TTTTG-----GCAG-GAAC--------AGC---GGAGATAGGCTTAGCTA    616
                      |.||     |||| ||.|        |||   |||||..||.||||...
RBAM_018020__    574 -TGTGCCGATGCAGAGATCGTGAGGGGAGCGCTGGAGACGGGGTTAGGGG    622

BSNT_02943___    617 TTTTGTGGCTGCTTCCTTTAAAAAGAAAATGGATCATTCA----TGGTGT    662
                     |.||.|||||||||||..|....|||||.|||.|.|||||    .||   
RBAM_018020__    623 TATTATGGCTGCTTCCCATGCGGAGAAAGTGGCTGATTCACACCGGG---    669

BSNT_02943___    663 CCAGGCTTGTATTTTTGCTGGGTTTGCTTGTCTA--GGTTCCGAAATATT    710
                      |||.| .||.||.||           ||||.||  ||..|.|..|||||
RBAM_018020__    670 -CAGTC-AGTCTTCTT-----------TTGTGTAACGGCACTGCTATATT    706

BSNT_02943___    711 C---ATGTGGATTC-TG------TTGAGTGTGTTTTCCGCTGCAAGCGGC    750
                     |   ..|.|||||| ||      ||..|.|||.||.|    |..|||  |
RBAM_018020__    707 CGGGCGGCGGATTCGTGATCTCATTAGGGGTGCTTAC----GATAGC--C    750

BSNT_02943___    751 GC------TCTT-AGCCTGC-AGCTCCCCAGTGCCAGGCGCACAAAACGA    792
                     ||      |||| ||||  | ||||.||.||.|||.|||..|||||||||
RBAM_018020__    751 GCAATGATTCTTAAGCC--CAAGCTGCCGAGCGCCTGGCATACAAAACGA    798

BSNT_02943___    793 AAGAGAAAGAAGTGA-----    807
                     |||||  ||||||||     
RBAM_018020__    799 AAGAG--AGAAGTGAAATGA    816


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02943 and RBAM_018020

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
