Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02094 and RBAM_017980
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_02094___uxuA.1.9828.seq
# -bsequence dna-align/RBAM_017980___uxuA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02094___uxuA-RBAM_017980___uxuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02094___uxuA-RBAM_017980___uxuA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02094___uxuA
# 2: RBAM_017980___uxuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1160
# Identity: 821/1160 (70.8%)
# Similarity: 821/1160 (70.8%)
# Gaps: 97/1160 ( 8.4%)
# Score: 3007.5
#
#
#=======================================
BSNT_02094___ 0 -------------------------------------------------- 0
RBAM_017980__ 1 ATGAAGCTGCCGTATCCCTCAGCAAAGAATACGTCTGCCGAAAAAACGAA 50
BSNT_02094___ 1 ----------------ATGAATATGACATTCCGATGGTATGGACGAGGCA 34
||||||||.||.||.||.|||||.||.|.|||.|
RBAM_017980__ 51 TATACGGGGGTGTAACATGAATATCACGTTTCGCTGGTACGGCCAAGGTA 100
BSNT_02094___ 35 ACGATACAGTCACACTTGAACACGTGAAGCAAATTCCCGGAGTCAAAGGC 84
|.|||||.||.||.||||||||.||.|..|||||||||||.|||||||||
RBAM_017980__ 101 ATGATACGGTGACTCTTGAACATGTCAGACAAATTCCCGGGGTCAAAGGC 150
BSNT_02094___ 85 ATCGTTTGGGCTCTCCATCAAAAGCCTGTCGGCGACGTGTGGGAAAAAGA 134
|||||.||||||||.||.||.|||||.|..|||||.||.||||||||.||
RBAM_017980__ 151 ATCGTCTGGGCTCTTCACCAGAAGCCCGCGGGCGAAGTATGGGAAAAGGA 200
BSNT_02094___ 135 AGAAATCAGAGCCG-AGACCGAATATATTCAATCCTATGGTTTTCATGCT 183
.||.||...|||.| ||.|.| ||..||||||||||||||.||||||||.
RBAM_017980__ 201 GGACATTGAAGCGGAAGTCAG-ATTCATTCAATCCTATGGGTTTCATGCA 249
BSNT_02094___ 184 GAAGTTGTAGAAAGCGTGAATGTTCACGAAGCAATTAAACTTGGGAACGA 233
||.||.||.|||||||||||||||||.|||||.||||||||.||..|.||
RBAM_017980__ 250 GAGGTCGTGGAAAGCGTGAATGTTCATGAAGCCATTAAACTAGGTCATGA 299
BSNT_02094___ 234 AGAACGCGGCCGGTATATTGAAAACTACAAGCAAACGATCCGCAACCTTG 283
|||||||||.|..||||||||..||||.||.||.||.||.|||||.||..
RBAM_017980__ 300 AGAACGCGGACAATATATTGAGCACTATAAACAGACCATTCGCAATCTGT 349
BSNT_02094___ 284 CCGGATTTGGCGTGAAAGTGATCTGCTATAATTTTATGCCGGTTTTTGAC 333
|||.|||.|||||||||||.|||||.||.|||||.||||||.|.||||||
RBAM_017980__ 350 CCGAATTCGGCGTGAAAGTCATCTGTTACAATTTCATGCCGATATTTGAC 399
BSNT_02094___ 334 TGGACACGCACGGACATGTTCCGGCCGCTAGAAGATGGATCGACCGCTCT 383
|||||.||.||.||.||||||||..||||.||.|||||.||.||||||.|
RBAM_017980__ 400 TGGACGCGTACCGATATGTTCCGCGCGCTGGAGGATGGGTCAACCGCTTT 449
BSNT_02094___ 384 GTTTTTTGAAAAGGCCAAGGTGGAAAGCCTTGATCCTCAAGAGCTGATTC 433
||||||||||||.||.||.||||||||.||...||||.|.||.||.||.|
RBAM_017980__ 450 GTTTTTTGAAAAAGCGAAAGTGGAAAGTCTCCCTCCTGAGGAACTCATCC 499
BSNT_02094___ 434 GGACGGTGGAGGATGCATCTGACATGACACTGCCGGGGTGGGATCCCGAA 483
|.|||||.||.||..|.|||||..||||.||.||.||||||||.||.||.
RBAM_017980__ 500 GCACGGTTGAAGAATCTTCTGATTTGACGCTTCCCGGGTGGGAGCCGGAG 549
BSNT_02094___ 484 AAATTAGCTCGGATCAAAGAGCTTTTTGCTGCCTA-CAGAACGGTCGATG 532
|||.|.||.||||||||.||.||.||||..||||| || ||||||.||.|
RBAM_017980__ 550 AAAATGGCCCGGATCAAGGAACTGTTTGAGGCCTATCA-AACGGTTGAAG 598
BSNT_02094___ 533 AAGGAAAGCTATGGGACAATTTATCATTCTTTTTGCAGGAAATTCTTCCT 582
||..|.||||.||||.||||.||..|||||||||.||.|||||.||||||
RBAM_017980__ 599 AAAAACAGCTTTGGGCCAATCTAGAATTCTTTTTACATGAAATCCTTCCT 648
BSNT_02094___ 583 GTTGCTGAGGCCTATGGTGTTCAAATGGCCATTCATCCGGATGACCCGCC 632
||.||.||||...|.||..|||||||||||||||||||||||||.|||||
RBAM_017980__ 649 GTAGCGGAGGAACACGGCATTCAAATGGCCATTCATCCGGATGATCCGCC 698
BSNT_02094___ 633 GTGGCCGATTTTCGGACTGCCGCGCATTATCACAGGAGAGGCAAGCTATA 682
.|||.|.|||||.||.|||||.||.||||||||.||.|||..|||.|||.
RBAM_017980__ 699 CTGGTCAATTTTTGGCCTGCCCCGTATTATCACCGGTGAGAAAAGTTATG 748
BSNT_02094___ 683 AGAAACTGCGGGCGATATCAGATTCACCGTCTAATTGTATCACCCTTTGC 732
|.||.|||||.|.|||.|||||||||||..|.||.|||||.||..|.|||
RBAM_017980__ 749 AAAAGCTGCGAGAGATTTCAGATTCACCCGCCAACTGTATTACGTTATGC 798
BSNT_02094___ 733 ACAGGTTCAATGGGAGCCAATCCCGCTAACGACATGGTGGAGATCGCTAA 782
||.|||||.||||||||..|||||||.||.||.||||||.|||||.|.||
RBAM_017980__ 799 ACGGGTTCGATGGGAGCGGATCCCGCCAATGATATGGTGAAGATCACCAA 848
BSNT_02094___ 783 A-ACGTATGCCGGCATC-GCTCCATTTTCACATATTCGCAATGTGAAAAT 830
| || |||| |||.|.| ||.||.|||.|.|||||.||.|||||||||||
RBAM_017980__ 849 ACAC-TATG-CGGGAGCTGCGCCGTTTGCCCATATACGAAATGTGAAAAT 896
BSNT_02094___ 831 TTATGAGAATGGCGATTTTATTGAAACATCTCATTTAACAAAGGATGGTT 880
.|..||.||.||.|||||||..|||||.||.|||.|.||.|..|||||.|
RBAM_017980__ 897 CTGCGATAACGGTGATTTTACGGAAACTTCGCATCTTACCAGTGATGGGT 946
BSNT_02094___ 881 CGATCAACATTCAAGGCGTGATGGAAGAACTGCATAAGCAGGATTACGAA 930
|.||..|.|||...||.||..|..|||||.||||....||.||.||..||
RBAM_017980__ 947 CCATTGATATTACCGGTGTTGTAAAAGAATTGCACGGCCAAGACTATAAA 996
BSNT_02094___ 931 GGATATGTCAGACCGGATCATGGGCGCCATCTTTGGGGCGAGCAATGCCG 980
||||||||..|.||.|||||.||.||.|||.|.||||||||.||||||||
RBAM_017980__ 997 GGATATGTACGGCCTGATCACGGCCGTCATATCTGGGGCGAACAATGCCG 1046
BSNT_02094___ 981 CCCGGGATATGGCTTATACGATCGGGCACTTGGCATCATGTATTTGAACG 1030
.|||||.|||||.|||||.|||||.|||.|.||.||.|||||||||||||
RBAM_017980__ 1047 GCCGGGTTATGGTTTATATGATCGTGCATTAGGAATTATGTATTTGAACG 1096
BSNT_02094___ 1031 GGCTGTGGGACGCCT---------ATGAAGCAATGGCAAAAAAAGAGGTG 1071
||||||||||.||.| ||| |.||||.||||
RBAM_017980__ 1097 GGCTGTGGGATGCGTTCTCGTCTCATG------------AGAAAGGGGTG 1134
BSNT_02094___ 1072 -GGCGTATGA 1080
.|.| ||||
RBAM_017980__ 1135 AAGAG-ATGA 1143
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