Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02998 and RBAM_017940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_02998___alsT.1.9828.seq
# -bsequence dna-align/RBAM_017940___alsT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02998___alsT-RBAM_017940___alsT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02998___alsT-RBAM_017940___alsT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02998___alsT
# 2: RBAM_017940___alsT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1435
# Identity: 1070/1435 (74.6%)
# Similarity: 1070/1435 (74.6%)
# Gaps: 53/1435 ( 3.7%)
# Score: 3925.5
#
#
#=======================================
BSNT_02998___ 1 ATGGAGTCTTTTTTCAATAGTTTGATTAATATTCCAAGTGATTTCATCTG 50
||||||.||||..|||.|....|.||.|||.||||||.||||||.||.||
RBAM_017940__ 1 ATGGAGGCTTTCATCAGTGAAATCATAAATGTTCCAAATGATTTTATTTG 50
BSNT_02998___ 51 GAAATACCTATTTTATATTTTAATAGGGCTTGGATTATTTTTTACCATAC 100
|||.||.||..|||||||||||.|.|||.|.|||||.|..|||||..|.|
RBAM_017940__ 51 GAAGTATCTTGTTTATATTTTAGTCGGGATCGGATTGTACTTTACGTTCC 100
BSNT_02998___ 101 GTTTTGGTTTTATCCAATTCCGTTATTTTATTGAAATGTTCAGAATAGTA 150
|||||.|.|||||.|||||||..||.||||||||||||||.|||||.||.
RBAM_017940__ 101 GTTTTCGCTTTATTCAATTCCAATACTTTATTGAAATGTTTAGAATCGTC 150
BSNT_02998___ 151 GGGGAGAAGCCGGAAGGAAATAAAGGTGTTTCATCTATGCAGGCATTCTT 200
||||||||||||.|||||||||||||.||.||.||.||||||||||||||
RBAM_017940__ 151 GGGGAGAAGCCGCAAGGAAATAAAGGAGTGTCTTCAATGCAGGCATTCTT 200
BSNT_02998___ 201 TATTTCGGCCGCATCCCGAGTCGGCACAGGGAATTTGACTGGTGTAGCCT 250
|||.||.|||||.||.||.|||||.||.||.||.|||||.||.||.||..
RBAM_017940__ 201 TATCTCAGCCGCTTCTCGTGTCGGAACCGGAAACTTGACCGGCGTCGCGC 250
BSNT_02998___ 251 TAGCAATTGCGACAGGCGGACCAGGCGCTGTATTTTGGATGTGGGTAGTA 300
|.||.|||||.||||||||.||.|||||.|||||||||||||||.|.|||
RBAM_017940__ 251 TGGCGATTGCAACAGGCGGTCCCGGCGCAGTATTTTGGATGTGGATCGTA 300
BSNT_02998___ 301 GCTGCAGTAGGCATGGCTTCAAGCTTTGTTGAGAGTACGTTAGCGCAGCT 350
||....||.||.||||||||.||||||||.||.||.||.||.||||||||
RBAM_017940__ 301 GCGATTGTCGGTATGGCTTCCAGCTTTGTGGAAAGCACCTTGGCGCAGCT 350
BSNT_02998___ 351 TTATAAGGTGAGAGACGGGGAGGATTTCCGCGGAGGCCCGGCTTACTATA 400
.|||||.|||.|...|||.||.||.||||||||.||.|||||.||.||.|
RBAM_017940__ 351 GTATAAAGTGCGTTCCGGTGACGAATTCCGCGGCGGTCCGGCATATTACA 400
BSNT_02998___ 401 TTCAAAAGGGTCTTGGTGCCAGATGGCTTGGCATCGTTTTTGCAATCTTA 450
|....|||||.||.||.|||.|.|||||.||.||..|.||.||..|.||.
RBAM_017940__ 401 TGGCTAAGGGACTGGGCGCCCGCTGGCTCGGTATTTTATTCGCGGTATTG 450
BSNT_02998___ 451 ATTACTGTCTCATTCGG-CTTGATTTTTAACGCTGTTCAAACAAATACAA 499
|||||.||.||.||||| ||| ||.||||||||.||.||..|||||||.|
RBAM_017940__ 451 ATTACCGTTTCTTTCGGACTT-ATCTTTAACGCCGTGCAGTCAAATACGA 499
BSNT_02998___ 500 TTGCTGGAGCATTGGATGGCGCATTCCATGTGAATAAAATAGTTGTAGCC 549
||.|||..||.||.||.|..|||||||||||||||||||.||||.|.||.
RBAM_017940__ 500 TTTCTGTGGCGTTTGACGAAGCATTCCATGTGAATAAAACAGTTATCGCA 549
BSNT_02998___ 550 ATAGTTCTGGCGGTTTTAACTGCGTTTATCATTTTCGGCGGTTTAAAACG 599
||..||.|.||.||.|||||.||.||.||.||.|||||||||.|.|||||
RBAM_017940__ 550 ATCATTTTAGCTGTATTAACGGCTTTCATTATATTCGGCGGTCTGAAACG 599
BSNT_02998___ 600 TGTTGTCGCTGTTTCACAGTTAATTGTGCCGGTTATGGCAGGCATTTATA 649
||||||..|.|||||.||.||.||.||.|||||.|||||.||.||.||||
RBAM_017940__ 600 TGTTGTATCCGTTTCGCAATTTATCGTTCCGGTCATGGCGGGTATGTATA 649
BSNT_02998___ 650 TTCTTATCGCTTTATTTGTTGTCATCACGAATATTACGGCTTTCCCTGGC 699
||||.|||||.||.|.||||||.||...|||||||||.||..|.||||
RBAM_017940__ 650 TTCTGATCGCGTTGTATGTTGTAATTGTGAATATTACCGCGGTACCTG-- 697
BSNT_02998___ 700 GTTATCGCT----ACAATTGTTAAAAATGCTTTAGGTTTTGAACAAGTCG 745
.||.||| ||.|||||.||||||||.||.|||.||||.||..|||
RBAM_017940__ 698 --AATTGCTTATGACGATTGTGAAAAATGCGTTTGGTCTTGAGCAGATCG 745
BSNT_02998___ 746 TCGGCGGCGGAATAGGCGGCATCATCGTTATCGGTGCGCAACGCGGACTT 795
|||||||..|..||||..|||||||..|||||||||||||.|||||.||.
RBAM_017940__ 746 TCGGCGGAAGCTTAGGAAGCATCATTATTATCGGTGCGCAGCGCGGCCTG 795
BSNT_02998___ 796 TTTTCAAACGAAGCAGGAATGGGGAGCGCACCAAACGCGGCTGCGACGGC 845
||||||||||||||.||.|||||.|||||.||.||.||.||.|||.|.||
RBAM_017940__ 796 TTTTCAAACGAAGCGGGTATGGGAAGCGCGCCGAATGCCGCAGCGGCTGC 845
BSNT_02998___ 846 TCATGTATCCCATCCGGCAAAGCAAGGCTTTATTCAAACATTAGGCGTAT 895
.|||||.||.||||||||.|||||.||.||.|||||.||..|.|||||.|
RBAM_017940__ 846 ACATGTGTCGCATCCGGCTAAGCAGGGATTAATTCAGACGCTCGGCGTGT 895
BSNT_02998___ 896 TTTTCGATACATTTATCATATGTACGTCCACAGCATTTATTATTTTGCTG 945
||||.|||||||||||..|.|||||.||.||.||.|||||.|||||..||
RBAM_017940__ 896 TTTTTGATACATTTATTGTTTGTACATCGACTGCCTTTATCATTTTATTG 945
BSNT_02998___ 946 TACAGTGTAACGCCAAAAGGCGACGGCATCCAAGTCACACAGGCTGCTCT 995
|||||..|.|||||.||||||||||||||||||||.|||||.||.||..|
RBAM_017940__ 946 TACAGCTTTACGCCTAAAGGCGACGGCATCCAAGTGACACAAGCCGCATT 995
BSNT_02998___ 996 TAACCATCATATTGGAGGCTGGGCGCCGACTTTCATCGCAGTCGCAATGT 1045
..|.||.||..|.||.||.|||||||||||.||.||.||..|.||.||||
RBAM_017940__ 996 GCAGCACCACCTCGGCGGATGGGCGCCGACATTTATTGCGATTGCGATGT 1045
BSNT_02998___ 1046 TCTTGTTTGCATTCAGTTCAGTTGTCGGCAACTATTATTATGGCGAGACA 1095
|.||.||.||||||||.||.||.||||||||||||||.|||||.||.||.
RBAM_017940__ 1046 TTTTATTCGCATTCAGCTCTGTCGTCGGCAACTATTACTATGGTGAAACG 1095
BSNT_02998___ 1096 AACATTGAATTTATTAAAACAAGCAAAACATGGCTGAACATTTAC--CGT 1143
||.||||||||||||||||||||||||||||||||.||.|||||| |||
RBAM_017940__ 1096 AATATTGAATTTATTAAAACAAGCAAAACATGGCTTAATATTTACCGCGT 1145
BSNT_02998___ 1144 A-TCGCTGTAATTGCTATGGTTGTGTATGGATCTTTATCAGGCTTCCAAA 1192
| |||.|||| |..|||||.|||||.||||.|||..|.|.||||||.|
RBAM_017940__ 1146 ATTCGTTGTA---GTGATGGTGGTGTACGGATGTTTGGCTGACTTCCAGA 1192
BSNT_02998___ 1193 TCGTTTGGGATATGGCGGACCTCTTTATGGGTATCATGGCGCTGATCAAC 1242
||||.|||||.|||||..||.|.||||||||..||.||||.||.||.|||
RBAM_017940__ 1193 TCGTCTGGGACATGGCAAACTTGTTTATGGGACTCTTGGCTCTCATTAAC 1242
BSNT_02998___ 1243 TTAATTGTGA--TTACGCTGCTGTCAAACGTTGCCTACAAAGTGTATAAA 1290
|||.|.|..| ||| ||||||...||.||.||||||||..|.|||||.
RBAM_017940__ 1243 TTAGTGGCAATCTTA--CTGCTGAGTAATGTAGCCTACAAGATCTATAAG 1290
BSNT_02998___ 1291 GATTACGCGAAACAGCGTAAACAAGGACTTGATCCTGTATTCAAAGCGAA 1340
|||||.||....|||||.|||.||||.||||||||||||||||||||..|
RBAM_017940__ 1291 GATTATGCCGCTCAGCGCAAAAAAGGTCTTGATCCTGTATTCAAAGCCGA 1340
BSNT_02998___ 1341 AAACATCCCAGGGCTGAAAAACGC----TGAAACATG---GGAAGATGAG 1383
.||.|.|||.|.|||.|| || ||||||||| |||||| ||
RBAM_017940__ 1341 GAATACCCCGGAGCTCAA----GCATATTGAAACATGGGCGGAAGA--AG 1384
BSNT_02998___ 1384 AA---ACAAG------AAGTA-------TAA---- 1398
|| ||||| |.||| |||
RBAM_017940__ 1385 AAGGTACAAGCCCCGAACGTAAGACTGCTAACTGA 1419
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