Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02993 and RBAM_017900
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:51
# Commandline: needle
# -asequence dna-align/BSNT_02993___parE.1.9828.seq
# -bsequence dna-align/RBAM_017900___parE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02993___parE-RBAM_017900___parE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02993___parE-RBAM_017900___parE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02993___parE
# 2: RBAM_017900___parE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1976
# Identity: 1577/1976 (79.8%)
# Similarity: 1577/1976 (79.8%)
# Gaps: 16/1976 ( 0.8%)
# Score: 6269.0
#
#
#=======================================
BSNT_02993___ 1 TTGGCTAGAAAACAGCAATTTGATTACAACGAAGATGCCATACAGGTGCT 50
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_017900__ 1 TTGGCTAGAAAACAGCAATTTGATTACAACGAAGATGCCATACAGGTGCT 50
BSNT_02993___ 51 CGAAGGCCTTGAGGCTGTCAGGAAAAGGCCGGGTATGTATATTGGCTCTA 100
.||||||||.||.||.|||||.|||.|.|||||.|||||.||.||.||.|
RBAM_017900__ 51 TGAAGGCCTGGAAGCCGTCAGAAAACGACCGGGAATGTACATCGGTTCGA 100
BSNT_02993___ 101 CTGACGCGCGGGGTTTGCACCACTTGGTTTATGAAATTGTAGATAACTCT 150
|.|||||.||.||..|||||||..||||.|||||.||.||.||.||.||.
RBAM_017900__ 101 CGGACGCACGCGGCCTGCACCATCTGGTATATGAGATCGTCGACAATTCC 150
BSNT_02993___ 151 GTCGACGAGGTGCTTGCCGGCCATGGAGATCACATAATCGTCAAAATACA 200
|||||.||.||.|||||||||.|.||||||||.||.|||||.|..|||||
RBAM_017900__ 151 GTCGATGAAGTTCTTGCCGGCTACGGAGATCATATTATCGTAACGATACA 200
BSNT_02993___ 201 TAAAGACAATAGTATTTCTGTACAGGATAGAGGCCGCGGCATGCCGACCG 250
|||.|||||.||.||.||.||||||||.|||||.|||||.||||||||||
RBAM_017900__ 201 TAAGGACAACAGCATCTCCGTACAGGACAGAGGACGCGGAATGCCGACCG 250
BSNT_02993___ 251 GAATGCATAAGCTCGGCAAACCAACCCCTGAAGTGATTTTAACGGTGCTT 300
|.||||||||||||||.||.||.||.||.|||||.|||||.||.|||||.
RBAM_017900__ 251 GGATGCATAAGCTCGGAAAGCCGACGCCGGAAGTTATTTTCACCGTGCTG 300
BSNT_02993___ 301 CATGCCGGAGGAAAATTCGGCCAAGGCGGCTATAAGACAAGCGGCGGGCT 350
||||||||.||.||||||||.||.|||||||||||.|||||||||||.||
RBAM_017900__ 301 CATGCCGGGGGGAAATTCGGACAGGGCGGCTATAAAACAAGCGGCGGTCT 350
BSNT_02993___ 351 CCACGGAGTTGGTGCATCAGTCGTGAATGCTTTATCTGAATGGCTGACGG 400
.||.||.||.||||||||.|||||.||.||.|||||.||.||||||||||
RBAM_017900__ 351 GCATGGTGTCGGTGCATCTGTCGTAAACGCATTATCGGAGTGGCTGACGG 400
BSNT_02993___ 401 TTACCATTGAGCGGGACGGTTTTGTCTATCAGCAGCGATTTGAAAATGGA 450
||||.||||||||.|||||.|.|||.|||.|.|||||.||||||||.||.
RBAM_017900__ 401 TTACTATTGAGCGTGACGGATATGTGTATAAACAGCGGTTTGAAAACGGC 450
BSNT_02993___ 451 GGAAAACCGGTTACATCTCTCGAAAAGATTGGCAAAACAAAAAAGACGGG 500
||.||.||.||.||.||.||.|||||.||.||.|..||.|||||.||.||
RBAM_017900__ 451 GGCAAGCCCGTGACTTCACTTGAAAAAATCGGAACGACCAAAAAAACAGG 500
BSNT_02993___ 501 AACTCTTACACACTTTAAGCCAGATCCAACGATGTTCAGCACAACCACTT 550
|||.|||||.||.|||||.||.|||||..|.|||||||||.||||...||
RBAM_017900__ 501 AACGCTTACCCATTTTAAACCTGATCCGTCAATGTTCAGCGCAACGGTTT 550
BSNT_02993___ 551 ATAATTTTGAAACGCTCTCTGAGCGCTTAAGAGAGTCTGCGTTTTTGTTA 600
||||||||||.|||||.||.||.||..|..|.||.||.||.||.||||||
RBAM_017900__ 551 ATAATTTTGACACGCTGTCAGAACGTCTGCGCGAATCGGCTTTCTTGTTA 600
BSNT_02993___ 601 AAAGGATTGAAAATTGAGCTGATTGATGAACGCAATGACCAGC----ATG 646
|||||.||||||||.||..|.||||||||||| ||.|.|| |.|
RBAM_017900__ 601 AAAGGTTTGAAAATAGAATTAATTGATGAACG----GAACGGCGTAAAAG 646
BSNT_02993___ 647 AGGTCTTTTATTATGAAAACGGCATAGAAGCGTTTGTTGCTTATTTAAAT 696
|.||.|||||||||||.|||||.||.|||||||||||.||||||.||||.
RBAM_017900__ 647 AAGTATTTTATTATGAGAACGGAATTGAAGCGTTTGTCGCTTATCTAAAC 696
BSNT_02993___ 697 GAAGAAAAAGACGTCTTGTCTGAAGTGGTCTCGTTTGAGGGTGAGCATCA 746
||.||||||||||..||.|..||||||||.||.|||||.||.||||||||
RBAM_017900__ 697 GAGGAAAAAGACGCTTTATGCGAAGTGGTTTCCTTTGAAGGCGAGCATCA 746
BSNT_02993___ 747 TTCTATAGAAGTGGACTTTGCGTTCCAGTTTAACGATGGTTATTCTGAAA 796
|...||.|||||.||.||.|||||.||||||||.||.||.|||||.||||
RBAM_017900__ 747 TGACATTGAAGTCGATTTCGCGTTTCAGTTTAATGACGGGTATTCAGAAA 796
BSNT_02993___ 797 ATATTTTGTCGTTTGTCAACAATGTCAGAACAAAAGACGGCGGGACACAT 846
||||..||||.||.||.||.||.|||||||||||.||||||||.||.||.
RBAM_017900__ 797 ATATGCTGTCATTCGTTAATAACGTCAGAACAAAGGACGGCGGCACCCAC 846
BSNT_02993___ 847 GAGTCAGGTGCAAAAACTGCGATGACGCGTGCTTTTAATGAATATGCGCG 896
||.|||||.||.|||||.||.|||||..|.||.|||||.||.||||||||
RBAM_017900__ 847 GAATCAGGAGCCAAAACGGCAATGACAAGAGCGTTTAACGAGTATGCGCG 896
BSNT_02993___ 897 AAAAGTGG--CTTTGCTGAAAGAAAAGGATAAGAACCTTGAAGGCACCGA 944
|||.||.| |||| |.|||||.||.||.|||||||||||||||.||||
RBAM_017900__ 897 AAAGGTCGCCCTTT--TAAAAGAGAAAGACAAGAACCTTGAAGGCGCCGA 944
BSNT_02993___ 945 TATAAGGGAAGGGCTTTCAGCCATTATTTCTGTCCGCATACCTGAGGAGC 994
|||.||||||||..|.||.||.||.|||||.||.||.||.||.|||||.|
RBAM_017900__ 945 TATCAGGGAAGGTTTGTCCGCAATCATTTCCGTGCGTATCCCGGAGGAAC 994
BSNT_02993___ 995 TTCTTCAATTTGAGGGACAAACAAAAGGAAAGCTCGGTACCAGTGAAGCA 1044
|.||.||||||||.||.||.||.|||||.|||||.||.||.|||||.||.
RBAM_017900__ 995 TGCTGCAATTTGAAGGCCAGACGAAAGGGAAGCTTGGCACAAGTGAGGCG 1044
BSNT_02993___ 1045 AGATCAGCGGTGGATGCGATTGTTTCAGAGCAGCTTGCTTACTTTTTAGA 1094
|||||.||.|.||||||..|..||||.|||.|.||||||||.||..|.||
RBAM_017900__ 1045 AGATCCGCCGCGGATGCCGTCATTTCCGAGAATCTTGCTTATTTCCTGGA 1094
BSNT_02993___ 1095 GGAAAATCGGGACACCGCAACGCTTCTTGTCAAAAAAGCAATCAAGGCGA 1144
.|||||.||.||.||.|||||.||.||||||||||||||.||.||.||.|
RBAM_017900__ 1095 AGAAAACCGCGATACAGCAACCCTGCTTGTCAAAAAAGCGATTAAAGCAA 1144
BSNT_02993___ 1145 GCCAGGCGCGCGAAGCGGCACGCAAAGCCCGTGAAGAAGCAAGAAGCGGC 1194
|||||||.||.||||||||.||.|||||..|.||||||||.|||||||||
RBAM_017900__ 1145 GCCAGGCCCGTGAAGCGGCCCGAAAAGCGAGAGAAGAAGCGAGAAGCGGC 1194
BSNT_02993___ 1195 AAAAAACGAAAAAAATCAGAAGCGACTTTAAGCGGAAAGCTGACGCCTGC 1244
|||||.||.|||||||||||||||||..|.||||||||.||.||.||.||
RBAM_017900__ 1195 AAAAAGCGCAAAAAATCAGAAGCGACGCTGAGCGGAAAACTCACACCGGC 1244
BSNT_02993___ 1245 GGGTTCAAGAAACCCGGCAAAAAATGAATTGTATCTCGTTGAGGGAGATT 1294
.|||||.|||||.|||||.||.||||||||||||||.||.||||||||.|
RBAM_017900__ 1245 CGGTTCCAGAAATCCGGCGAAGAATGAATTGTATCTGGTGGAGGGAGACT 1294
BSNT_02993___ 1295 CAGCAGGCGGGTCAGCCAAGCAGGGACGAGACCGCAGATTCCAGGCGGTT 1344
|.||.||.||.||.||.||.||||||.|||||||.|.||||||.||.||.
RBAM_017900__ 1295 CTGCGGGAGGTTCTGCAAAACAGGGAAGAGACCGGAAATTCCAAGCCGTG 1344
BSNT_02993___ 1345 CTGCCTTTACGCGGTAAAGTCATTAATACAGAAAAAGCTAAGCTTGCTGA 1394
|||||..|.|||||.||.|||||.||.|||||.|||||.||||||||.||
RBAM_017900__ 1345 CTGCCCCTTCGCGGAAAGGTCATCAACACAGAGAAAGCAAAGCTTGCAGA 1394
BSNT_02993___ 1395 TATCTTTAAAAATGAAGAGATCAATACGATCATTCATGCGATCGGCGGGG 1444
.|||||.|||||||||||.|||||||||||.||||||||||||||.||.|
RBAM_017900__ 1395 CATCTTCAAAAATGAAGAAATCAATACGATTATTCATGCGATCGGAGGCG 1444
BSNT_02993___ 1445 GAGTCGGGGCAGATTTCTCA-ATCGATGACATCAACTACGACAAAATCAT 1493
|.|||||.|||||||| |.| ||.||.||||||||.||.|||||.|||||
RBAM_017900__ 1445 GTGTCGGCGCAGATTT-TGAGATAGACGACATCAATTATGACAAGATCAT 1493
BSNT_02993___ 1494 CATTATGACCGATGCCGATACTGACGGCGCCCATATTCAAGTGCTGCTTC 1543
|||.|||||.||.||.|||||.||||||||.||.||||||||..||||..
RBAM_017900__ 1494 CATCATGACGGACGCGGATACCGACGGCGCGCACATTCAAGTCTTGCTGT 1543
BSNT_02993___ 1544 TTACCTTTTTCTATCGCTATATGAAACCGCTCATTGAGCATGGCAAGGTG 1593
|.||.||||||||.||||||||||||||..|.||.|||||.||.||.||.
RBAM_017900__ 1544 TAACATTTTTCTACCGCTATATGAAACCTTTAATCGAGCACGGAAAAGTC 1593
BSNT_02993___ 1594 TTCATTGCGCTGCCACCTTTATATAAGGTCAGTAAAGGAAGCGGGAAGAA 1643
|||||.||.||.||.|||.|.||.||.||.||.|||||||||||.|||||
RBAM_017900__ 1594 TTCATCGCCCTTCCGCCTCTTTACAAAGTGAGCAAAGGAAGCGGTAAGAA 1643
BSNT_02993___ 1644 GGAAATCATTGAATATGCATGGTCTGATGAAGAGATGGGTGATGTCCTGA 1693
.||.||.|||||||||||.|||||.||.|||||.||||..|..||..|.|
RBAM_017900__ 1644 AGAGATTATTGAATATGCTTGGTCCGACGAAGAAATGGACGGCGTTTTAA 1693
BSNT_02993___ 1694 AAAAAGTCGGCAAAGGCTATACCATTCAACGATAT-AAGGGTCTTGGAGA 1742
|.||||||||||||||.||||||||.||.||.||| |||||| |.|||||
RBAM_017900__ 1694 AGAAAGTCGGCAAAGGGTATACCATCCAGCGCTATAAAGGGT-TGGGAGA 1742
BSNT_02993___ 1743 GATGAACGCAGACCAGTTGTGGGAAACGACGATGAATCCGGAGTCCCGCA 1792
.|||||||||||||||.|.||||||||||||||||||||.||.||.||.|
RBAM_017900__ 1743 AATGAACGCAGACCAGCTCTGGGAAACGACGATGAATCCCGAATCGCGAA 1792
BSNT_02993___ 1793 CACTTGTTAGGGTCAAAATTGACGATGCGGCACGTGTAGAAAGACGTGTG 1842
|.||.||.||.|||||.||.||||||||||||||.||||||.|.|||||.
RBAM_017900__ 1793 CGCTCGTCAGAGTCAAGATCGACGATGCGGCACGGGTAGAACGCCGTGTA 1842
BSNT_02993___ 1843 ACGACGTTAATGGGAGACAAAGTAGAGCCGCGCAGAAAGTGGATTGAGAA 1892
|||||.||||||||||||||||||||.|||.|.|||||.||||||||.||
RBAM_017900__ 1843 ACGACATTAATGGGAGACAAAGTAGAACCGAGAAGAAAATGGATTGAAAA 1892
BSNT_02993___ 1893 AAACGTCGCTTTTGGCTTAGATGAAGAAAGCAATATCTTAGAAAATGAAA 1942
|||.||.||.||.||.||||||||.|||||||||||.|||||||||||||
RBAM_017900__ 1893 AAATGTTGCCTTCGGATTAGATGAGGAAAGCAATATTTTAGAAAATGAAA 1942
BSNT_02993___ 1943 ACTTATCGGTCGCTGAGGAGGTTTAA 1968
||||.|||||||||||||||||||||
RBAM_017900__ 1943 ACTTGTCGGTCGCTGAGGAGGTTTAA 1968
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