Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02989 and RBAM_017880

See Amino acid alignment / Visit BSNT_02989 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:50
# Commandline: needle
#    -asequence dna-align/BSNT_02989___yneS.1.9828.seq
#    -bsequence dna-align/RBAM_017880___yneS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02989___yneS-RBAM_017880___yneS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02989___yneS-RBAM_017880___yneS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02989___yneS
# 2: RBAM_017880___yneS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 589
# Identity:     440/589 (74.7%)
# Similarity:   440/589 (74.7%)
# Gaps:          14/589 ( 2.4%)
# Score: 1624.5
# 
#
#=======================================

BSNT_02989___      1 ATGTTAATTGCTTTATTGATTATTTTGGCCTACTTGATAGGCAGCATTCC     50
                     |||||.||||||||||||||||||||||||||..|.|||||||||||.||
RBAM_017880__      1 ATGTTGATTGCTTTATTGATTATTTTGGCCTATGTAATAGGCAGCATCCC     50

BSNT_02989___     51 GTCTGGCTTAATTGTGGGCAAGCTTGCCAAGGGAATTGATATTCGGGAGC    100
                     |||.||.|||||.||.|||||.|||||.||.||.||.||||||.|.||.|
RBAM_017880__     51 GTCAGGTTTAATCGTAGGCAAACTTGCGAAAGGGATCGATATTAGAGAAC    100

BSNT_02989___    101 ACGGAAGCGGCAACTTAGGCGCTACCAATGCATTCCGTACATTGGGTGTA    150
                     |||||||||||||.||.||||||||.|||||.||.||.||..|.||.||.
RBAM_017880__    101 ACGGAAGCGGCAATTTGGGCGCTACAAATGCTTTTCGCACGCTTGGCGTT    150

BSNT_02989___    151 AAAGCTGGTTCGGTCGTCATAGCCGGAGATATTTTGAAAGGGACACTGGC    200
                     |||||.||.||.||.|||||.||.|..||||||||.|||||.||..||||
RBAM_017880__    151 AAAGCGGGATCTGTTGTCATCGCAGCCGATATTTTAAAAGGCACCTTGGC    200

BSNT_02989___    201 AACTGCATTGCCTTTTCTCATGCATGTTGATATTCACCCGCTTCTTGCAG    250
                     ..|.||..|.||.|.|.|..||||.||....|||||.||.|||||.||||
RBAM_017880__    201 CGCGGCGCTCCCATATTTACTGCACGTCCCCATTCATCCTCTTCTCGCAG    250

BSNT_02989___    251 GAGTCTTTGCGGTTTTAGGCCACGTGTTTCCCATCTTCGCCAAATTTAAA    300
                     |.||....||.||..|.|||||.||.||.|||.|.|||||.||.|||||.
RBAM_017880__    251 GGGTGGCAGCAGTAATCGGCCATGTATTCCCCGTGTTCGCAAAGTTTAAG    300

BSNT_02989___    301 GGCGGTAAAGCCGTGGCGACATCAGGAGGCGTTTTGCTATTTTACGCACC    350
                     ||.||.||||||||.||.||||||||.|||||..||||.|||||.||.||
RBAM_017880__    301 GGAGGCAAAGCCGTAGCCACATCAGGGGGCGTCCTGCTGTTTTATGCTCC    350

BSNT_02989___    351 CCTGTTATTTATCACGATGGTTGCGGTATTCTTCATCTTTTTATACTTGA    400
                     .||||||||..|.|||||||||||.|||||.|||.|.|||||||.|.|.|
RBAM_017880__    351 GCTGTTATTCGTTACGATGGTTGCAGTATTTTTCGTATTTTTATTCCTTA    400

BSNT_02989___    401 CTAAATTTGTTTCTCTCTCATCGATGTTAACAGGGATCTATACTGTTATA    450
                     |.||||||||||||||.||.||.||||||||||||||.|||||..||||.
RBAM_017880__    401 CGAAATTTGTTTCTCTGTCTTCAATGTTAACAGGGATTTATACGATTATT    450

BSNT_02989___    451 TATAGTTTCTTTGTCCATGATACGTATTTATTGATTGTCGTTACCCTGCT    500
                     ||..||.|.|||||..|.||..|.||||||||..|.||.||.||   |||
RBAM_017880__    451 TACTGTCTGTTTGTAAAAGACCCTTATTTATTAGTCGTAGTGAC---GCT    497

BSNT_02989___    501 CACTATT-------TTTGTGATATACAGACACCGAGCGAACATTAAACGA    543
                     |    ||       |||||.||.|||||||||.|.||.|||||.|||||.
RBAM_017880__    498 C----TTGACCGCGTTTGTTATCTACAGACACAGGGCAAACATCAAACGG    543

BSNT_02989___    544 ATTATCAATAAAACAGAACCTAAAGTAAAATGGTTATAA    582
                     |||||.||.|||||||||||.||..|.||||||||.|.|
RBAM_017880__    544 ATTATAAACAAAACAGAACCGAAGATCAAATGGTTTTGA    582


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