Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02986 and RBAM_017860

See Amino acid alignment / Visit BSNT_02986 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:50
# Commandline: needle
#    -asequence dna-align/BSNT_02986___yneQ.1.9828.seq
#    -bsequence dna-align/RBAM_017860___yneQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02986___yneQ-RBAM_017860___yneQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02986___yneQ-RBAM_017860___yneQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02986___yneQ
# 2: RBAM_017860___yneQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 323
# Identity:     223/323 (69.0%)
# Similarity:   223/323 (69.0%)
# Gaps:          46/323 (14.2%)
# Score: 714.5
# 
#
#=======================================

BSNT_02986___      1 ATGGCGTTTGGTGTGAA--ACGGG--AGGAACTTAACCGGTGGAAA----     42
                     |||||.||||    |||  |||.|  ||||||        ||||||    
RBAM_017860__      1 ATGGCATTTG----GAATTACGCGTAAGGAAC--------TGGAAAGATG     38

BSNT_02986___     43 CAAGCAG--TGAA----AAGAGGAGAAATCGCATTTTTAACACATTACTG     86
                     .||||.|  ||.|    ||| ||| |||||||.||||||||.||||||||
RBAM_017860__     39 GAAGCGGGATGTATCGGAAG-GGA-AAATCGCTTTTTTAACGCATTACTG     86

BSNT_02986___     87 GCTGGATGACCGATTTCCAGAAGCAAAGACTGTGACAAAAGCCGGATGTG    136
                     ||||||.|||||.|||||.||.||.|||||.|||||.||.||||   ||.
RBAM_017860__     87 GCTGGACGACCGCTTTCCGGAGGCTAAGACCGTGACGAAGGCCG---GTT    133

BSNT_02986___    137 CA---GACATTGATAAGCTGGTTCAG-TGGGGAGCGGCGTACGGGTTAAA    182
                     ||   ||..|..||||.|| |.|||| ||||||||||..||||||.|.||
RBAM_017860__    134 CAAGCGATCTCAATAAACT-GATCAGATGGGGAGCGGAATACGGGCTGAA    182

BSNT_02986___    183 AAAAGAATGGATCCATAAGAAAAGTGAATTTCCTCACTTTGATCTGCTGG    232
                     ....||.|||||.||..|.||||.|||||||||.||||||||.|||||.|
RBAM_017860__    183 GCCGGAGTGGATTCACCATAAAAATGAATTTCCCCACTTTGACCTGCTCG    232

BSNT_02986___    233 GTGAAACACAAA----AATATGTTTTGGAACAAGAAAACCTAACCGATCA    278
                     ||||.||.||||    .|||    ||.|||.|||||.|.||.||.|||||
RBAM_017860__    233 GTGATACGCAAAGAAGCATA----TTAGAAAAAGAACATCTGACTGATCA    278

BSNT_02986___    279 TCTTATACGATTTCA-TTTGTAA    300
                     |||.|.|.| .|||| ..|||||
RBAM_017860__    279 TCTCAAAAG-GTTCAGGCTGTAA    300


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