Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02958 and RBAM_017670

See Amino acid alignment / Visit BSNT_02958 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:48
# Commandline: needle
#    -asequence dna-align/BSNT_02958___yneB.1.9828.seq
#    -bsequence dna-align/RBAM_017670___yneB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02958___yneB-RBAM_017670___yneB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02958___yneB-RBAM_017670___yneB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02958___yneB
# 2: RBAM_017670___yneB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 659
# Identity:     501/659 (76.0%)
# Similarity:   501/659 (76.0%)
# Gaps:          13/659 ( 2.0%)
# Score: 1882.5
# 
#
#=======================================

BSNT_02958___      1 ATGAAAGCACTCATTTATGCCCGTGTAAGCACAAATAAAGAACAGCAGGA     50
                     |||||.||.||||||||||||||.|||||||||||.||||||||||||.|
RBAM_017670__      1 ATGAAGGCGCTCATTTATGCCCGCGTAAGCACAAACAAAGAACAGCAGCA     50

BSNT_02958___     51 AACGTCATTAAAGCGGCAGGAGGAGGAGCTTACGGCCATTGCAGCGGAGA    100
                     ||||||||||||..|.|||||.||||||||.|..|..||.||.||.|..|
RBAM_017670__     51 AACGTCATTAAAAAGACAGGAAGAGGAGCTCAGTGAGATCGCTGCTGCAA    100

BSNT_02958___    101 ACGACATGGAAGTGGTCAAAGTGATTTCAGAAAAAGCCAGCGGATATGAA    150
                     |||.|||||||||.||.|||||.|||||.||.|||||||||||.||.|||
RBAM_017670__    101 ACGGCATGGAAGTCGTGAAAGTCATTTCTGAGAAAGCCAGCGGTTACGAA    150

BSNT_02958___    151 ATGGATCGGGATGGTGTATTTGAGCTGCTTGATGAGATTAAGAACGCTGG    200
                     |||||.||.||.||.||||||||..||||||||||.|||||.||..|...
RBAM_017670__    151 ATGGACCGCGACGGAGTATTTGAAATGCTTGATGAAATTAAAAAATCACA    200

BSNT_02958___    201 AATTGATGTCATTTTGGTTCAGGATGAGACAAGGCTCGGACGGGGAAACG    250
                     .|||||.|..||.|||||.|||||.||.||.||..|.|||.|.|||||||
RBAM_017670__    201 TATTGACGCGATATTGGTGCAGGACGAAACGAGATTGGGAAGAGGAAACG    250

BSNT_02958___    251 CAAAAATCGCACTGCTTCATTGCATTTATA--GAGAAGGTGTGAAAGTCT    298
                     |.||.||.||.||..|.|||||||||||.|  |||||  .||.|||.|.|
RBAM_017670__    251 CCAAGATTGCGCTTTTGCATTGCATTTACAGGGAGAA--CGTAAAAATAT    298

BSNT_02958___    299 ATACAACGGCTCATAGAGGTGAACTGGAGTTATCGGAGGCTGACTCAATG    348
                     ||||.||||||||||.|||||||||||||.|.||.||.|||||.||.|||
RBAM_017670__    299 ATACGACGGCTCATAAAGGTGAACTGGAGCTTTCCGAAGCTGATTCGATG    348

BSNT_02958___    349 GTCTTGGAAATCGTCAGCATTGTGGAAGAGTATCAGCGAAAGATTCACAA    398
                     ||..|.|||||||||||.|||||.||.||.|||||..|.||.||||||||
RBAM_017670__    349 GTACTCGAAATCGTCAGTATTGTTGAGGAATATCAAAGGAAAATTCACAA    398

BSNT_02958___    399 CATGAAAATCAGACGGGGAATGAAACGTGCAGTAAAAAACGGTTTTAAAC    448
                     .|||||||||.|.||||||||||||.|.||.||.||||||||.|..||||
RBAM_017670__    399 TATGAAAATCCGGCGGGGAATGAAAAGAGCCGTGAAAAACGGCTACAAAC    448

BSNT_02958___    449 CGCAAAAAAACTTAAAAAACCAACATGGGAACAGTGGAAAAGAAAAAATA    498
                     |..||...||..|.||||||..|||||..|||||.|||||||||||||.|
RBAM_017670__    449 CTGAACGGAATCTGAAAAACAGACATGAAAACAGCGGAAAAGAAAAAAAA    498

BSNT_02958___    499 GAGGTGCCAATCTCTGAGATCGTCCGCCTAAGAGCGAATAAACTGACGTT    548
                     |||||.||..|.||.||.||..||.|.||.|||||.||.||.||.||.||
RBAM_017670__    499 GAGGTTCCGGTTTCGGAAATTATCAGGCTGAGAGCCAACAAGCTTACCTT    548

BSNT_02958___    549 TGCTGAAATCGCGGCTACCCTAAGAGGGTTTGGCTATGATGTCTCTAAAG    598
                     |||.||||||||.||.|||.||||.||.||.|||||.|||||.||.||||
RBAM_017670__    549 TGCAGAAATCGCAGCGACCTTAAGGGGATTCGGCTACGATGTGTCCAAAG    598

BSNT_02958___    599 CAACCGTTCACCGGCGTTTTCAGGAATA---CATAGAGAATGAAGAGACA    645
                     |.||.|||||||||||.|||||||||||   |..|||.|..||  ||.||
RBAM_017670__    599 CCACGGTTCACCGGCGGTTTCAGGAATATACCGCAGACACAGA--AGGCA    646

BSNT_02958___    646 GCAGAGTGA    654
                     ||.||    
RBAM_017670__    647 GCTGA----    651


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