Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02957 and RBAM_017660

See Amino acid alignment / Visit BSNT_02957 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:48
# Commandline: needle
#    -asequence dna-align/BSNT_02957___yneA.1.9828.seq
#    -bsequence dna-align/RBAM_017660___yneA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02957___yneA-RBAM_017660___yneA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02957___yneA-RBAM_017660___yneA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02957___yneA
# 2: RBAM_017660___yneA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 327
# Identity:     224/327 (68.5%)
# Similarity:   224/327 (68.5%)
# Gaps:          30/327 ( 9.2%)
# Score: 737.0
# 
#
#=======================================

BSNT_02957___      1 ATGAGTAAAGAATCTATTATTTTTGTCGGTCTGTTCACAGTGATTTTGAG     50
                     |||...||||||||||||||.||||||||.|||||.||.|.||||||.||
RBAM_017660__      1 ATGGCGAAAGAATCTATTATATTTGTCGGACTGTTTACTGCGATTTTAAG     50

BSNT_02957___     51 CGCGGTTATCCTTA--TGCTGTCATATACAAGCAGCGGCCAAGAGCTTAA     98
                     .||.|.||| .|||  || |.||||.|       ||||..||     |.|
RBAM_017660__     51 TGCCGCTAT-TTTACTTG-TCTCATGT-------GCGGGAAA-----TGA     86

BSNT_02957___     99 TCAG------------TATGTTAAAATAGAAGTCCAGCAAGGCGACACAC    136
                     ||||            ||||||||||||.|.||.|||.|.|||||.||||
RBAM_017660__     87 TCAGTCCCTCAGCCAATATGTTAAAATAAAGGTTCAGGACGGCGATACAC    136

BSNT_02957___    137 TTTGGTCAATTGCTGATCAGGTAGCAGATACAAAAAAGATAAACAAAAAT    186
                     |.||||||.||||.|||||.||||||||.|..|||.|.||.||.|||.|.
RBAM_017660__    137 TCTGGTCACTTGCGGATCATGTAGCAGAAAAGAAACACATTAATAAAGAA    186

BSNT_02957___    187 GATTTTATTGAATGGGTAGCTGATAAAAATCAACTTCAAACCTCTGATAT    236
                     |||||.|||||.|||||..|.||.||.|||||.||.|||||..|||||||
RBAM_017660__    187 GATTTCATTGAGTGGGTGACGGAGAATAATCATCTCCAAACTGCTGATAT    236

BSNT_02957___    237 CCAGCCGGGTGATG-AGTTAGTGATCCCATTGAAAAAGAAGCATCAGGAT    285
                     ..||||.||.||.| |.|||.|..|||..|| ||.||.|||||||.||..
RBAM_017660__    237 AAAGCCCGGAGACGAACTTATTCTTCCGGTT-AAGAAAAAGCATCCGGCC    285

BSNT_02957___    286 GCATATGAATTGGCAACTGTAAGATAG    312
                     |.||||.|..||||.|.|||.|..|||
RBAM_017660__    286 GTATATCAGCTGGCCATTGTCAATTAG    312


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