Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03831 and RBAM_017040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:10
# Commandline: needle
# -asequence dna-align/BSNT_03831.1.9828.seq
# -bsequence dna-align/RBAM_017040___nucB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03831-RBAM_017040___nucB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03831-RBAM_017040___nucB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03831
# 2: RBAM_017040___nucB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 439
# Identity: 271/439 (61.7%)
# Similarity: 271/439 (61.7%)
# Gaps: 86/439 (19.6%)
# Score: 935.5
#
#
#=======================================
BSNT_03831 1 -----------------ATGGTTCCGCAA--------------------- 12
|||| .|.||||
RBAM_017040__ 1 ATGAATGCGTTTATGAAATGG-GCGGCAAGTCTGCTTTTGGTGATCTCTC 49
BSNT_03831 13 --CAGATCCAAGGC-------------GCATC--TTCG------------ 33
|||.|| ||| ||||| ||||
RBAM_017040__ 50 TTCAGTTC---GGCTTTACGGGCGCCGGCATCCATTCGGACAGTGCTGCT 96
BSNT_03831 34 ---------------TATGACAAAGTGTTATATTTTCCGCTGTCTCGTTA 68
||.||..|.|||.|.|||||.||||||||....||
RBAM_017040__ 97 CGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATA 146
BSNT_03831 69 TCCGGAAACCGGCAGTCATATTAGAGATGCGATTGCAGAGGGACATCCAG 118
||||||.||.||.|.||||||.|.|||.||.|||.|.|..||.|||.|.|
RBAM_017040__ 147 TCCGGAGACGGGAAATCATATAAAAGACGCCATTTCGGCAGGTCATTCTG 196
BSNT_03831 119 ATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCT 168
|.||||||||.|||||..|.|..|||||.||.||.||..||.|.|||||.
RBAM_017040__ 197 AGATTTGTACAATTGATCGGGGCGGAGCGGAAAATAGAAGGAAAGAATCA 246
BSNT_03831 169 TTAAAGGGAATCCCGACCAAGCCGGGCTATGACCGGGATGAGTGGCCGAT 218
||.||.|||||.|||||.|||||.||.|.||||||.|||||.|||||.||
RBAM_017040__ 247 TTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCAT 296
BSNT_03831 219 GGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGATGTCCGATATGTGACGC 268
|||.||||||...||||||||.||.|||||||||.||.|||||||.||.|
RBAM_017040__ 297 GGCAGTCTGCACAGAAGGCGGGGCGGGGGCTGATATCAGATATGTAACCC 346
BSNT_03831 269 CTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGC 318
|.||.|||||.|||||.|||||.||.|||||.||.||||||||||||.|.
RBAM_017040__ 347 CGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGA 396
BSNT_03831 319 TATCCTGACGGCACCAGAGTGCTGTTTATTGTGCAGTAG 357
|||.|.||||||||.|||||..|.|||||.||.||||||
RBAM_017040__ 397 TATTCCGACGGCACGAGAGTATTATTTATCGTTCAGTAG 435
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