Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02755 and RBAM_016890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_02755___mutL.1.9828.seq
# -bsequence dna-align/RBAM_016890___mutL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02755___mutL-RBAM_016890___mutL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02755___mutL-RBAM_016890___mutL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02755___mutL
# 2: RBAM_016890___mutL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1940
# Identity: 1497/1940 (77.2%)
# Similarity: 1497/1940 (77.2%)
# Gaps: 115/1940 ( 5.9%)
# Score: 5909.5
#
#
#=======================================
BSNT_02755___ 1 ATGAATGTGGCAAAAGTCATCCAGCTGTCAGATGAGCTTTCAAATAAAAT 50
.||||||||||||||||||||||||||||.||.||.||||||||
RBAM_016890__ 1 ------TTGGCAAAAGTCATCCAGCTGTCAGATGAACTCTCGAATAAAAT 44
BSNT_02755___ 51 AGCGGCGGGCGAGGTTGTGGAACGGCCCGCCTCAGTCGTCAAAGAATTGG 100
||||||.||||||||.||.||||||||.|||||||||||.||||||||||
RBAM_016890__ 45 AGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGTCGTTAAAGAATTGG 94
BSNT_02755___ 101 TGGAAAATGCGATCGACGCTGACAGCACAGTCATTGAAATCGATATTGAG 150
|||||||.||.||||||||..||||||||||||||||||||||.||.|||
RBAM_016890__ 95 TGGAAAACGCCATCGACGCAAACAGCACAGTCATTGAAATCGACATAGAG 144
BSNT_02755___ 151 GAAGCAGGCCTTGCATCCATTCGGGTCTTGGATAACGGCGAAGGAATGGA 200
|||||.||.|||.|.||.||||||||..|.||||||||||||||.|||||
RBAM_016890__ 145 GAAGCGGGGCTTTCGTCGATTCGGGTGCTCGATAACGGCGAAGGGATGGA 194
BSNT_02755___ 201 GAATGAAGATTGCAAGCGAGCTTTCCGCCGCCACGCAACGAGTAAAATAA 250
.|..||.|||||||||||.|||||||||||||||||.||.||||||||.|
RBAM_016890__ 195 AACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAAATCA 244
BSNT_02755___ 251 AAGATGAAAATGATTTATTCAGGGTGAGAACGCTCGGTTTCAGGGGAGAA 300
||||||||||.||..|.|||.||||||||||.|||||||||.|.||||||
RBAM_016890__ 245 AAGATGAAAACGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAA 294
BSNT_02755___ 301 GCCCTGCCGAGTATCGCGTCAGTCTCTCATCTGGAGATTACAACAAGCAC 350
||..||||.|||||||||||.||.|||||||||||.||.|.|||.||||.
RBAM_016890__ 295 GCTTTGCCAAGTATCGCGTCTGTTTCTCATCTGGAAATCAAAACGAGCAT 344
BSNT_02755___ 351 TGGTGAAGGAGCTGGGACGAAGCTCGTCCTCCAAGGAGGAAACATCATTT 400
.||.||.|||||.||.||..|.|||.|.||.||.||.||.||.|||||||
RBAM_016890__ 345 CGGCGAGGGAGCGGGAACCCATCTCATTCTTCAGGGCGGGAATATCATTT 394
BSNT_02755___ 401 CCGAATCGCGTTCCTCAAGCAGGAAGGGAACTGAAATTGTCGTTTCCAAC 450
|.||...|...|||||.|||||.||.|||||.||.|||.|||||.|||||
RBAM_016890__ 395 CTGAGCAGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAAC 444
BSNT_02755___ 451 CTGTTTTTTAACACACCGGCCCGTTTGAAATATATGAAAACCGTTCATAC 500
||||||||.||.|||||.|||.|.||||||||||||||||||||.|||||
RBAM_016890__ 445 CTGTTTTTCAATACACCCGCCAGATTGAAATATATGAAAACCGTGCATAC 494
BSNT_02755___ 501 AGAGCTTGGAAACATTACAGACGTGGTTAACCGTATTGCTCTGGCGCATC 550
.|||||.||.||.|||||.||.||.||.|||||.||.|||||.|||||||
RBAM_016890__ 495 GGAGCTCGGCAATATTACGGATGTTGTCAACCGGATCGCTCTTGCGCATC 544
BSNT_02755___ 551 CAGAGGTATCGATCCGCCTGCGACATCATGGGAAAAACCTGCTTCAAACG 600
|.||.|||||.|||||.||.||.|||||.||||||||.|||||.||.||.
RBAM_016890__ 545 CGGAAGTATCCATCCGTCTCCGCCATCAGGGGAAAAATCTGCTGCAGACA 594
BSNT_02755___ 601 AACGGAAACGGAGATGTGCGCCATGTACTGGCAGCGATTTACGGCACGGC 650
|||||.|||||.||.|||||||||||.|||||.||.||||||||.|||||
RBAM_016890__ 595 AACGGTAACGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGACGGC 644
BSNT_02755___ 651 TGTCGCCAAAAAAATGCTTCCGCTGCATGCGAGCTC-CTTGGATTTTGAA 699
.||.||.|||||||||.|.|||||.|||...||||| ||| |||||||||
RBAM_016890__ 645 GGTTGCGAAAAAAATGATACCGCTCCATATCAGCTCGCTT-GATTTTGAA 693
BSNT_02755___ 700 GTAAAGGGATATATCGCCCTCCCAGAGATTACACGGGCGTCGAGAAACTA 749
||.|||||.||.||.||.||.||.||.||.||.||.||.||.||||||||
RBAM_016890__ 694 GTCAAGGGCTACATTGCGCTTCCGGAAATCACGCGTGCATCCAGAAACTA 743
BSNT_02755___ 750 TATGTCGTCTGTGGTCAATGGCCGTTACATTAAAAATTTCCCGCTCGTCA 799
.|||||.|||||..|.||.||..|.||||||||.|||||||||||.||.|
RBAM_016890__ 744 CATGTCATCTGTCATTAACGGAAGATACATTAAGAATTTCCCGCTTGTAA 793
BSNT_02755___ 800 AAGCGGTTCATGAAGGCTATCATACGCTTCTGCCGATCGGACGCCATCCG 849
||||.||.|||||.||||||||.||.||||||||||||||.|||||||||
RBAM_016890__ 794 AAGCAGTGCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCG 843
BSNT_02755___ 850 ATTACTTTTATAGAAATTACGATGGACCCGATTTTAGTCGATGTCAATGT 899
|||||.|||||.|||||||||||||||||||||||.||.|||||||||||
RBAM_016890__ 844 ATTACGTTTATCGAAATTACGATGGACCCGATTTTGGTTGATGTCAATGT 893
BSNT_02755___ 900 GCATCCATCGAAGCTTGAGGTCCGGCTCAGCAAGGAAACAGAGCTTCATG 949
.|||||.|||||||||||.|||||.||||||||.||.||||||||.||||
RBAM_016890__ 894 CCATCCGTCGAAGCTTGAAGTCCGCCTCAGCAAAGAGACAGAGCTGCATG 943
BSNT_02755___ 950 ACTTAATTCGTGACGGAATTAAAGATGTATTTAAACAGCAGCAGCTGATT 999
|..|.||.||||||||.||.||.||.||.|||.||.||||||.|||.|||
RBAM_016890__ 944 AGCTGATCCGTGACGGGATAAAGGAAGTGTTTCAAAAGCAGCGGCTTATT 993
BSNT_02755___ 1000 CCGAGTGCCCAGCTTCCGAAAAAAT------CGGCACCTGTTATCAAAAA 1043
|||||.||||||||.|||||||||| |||||||.| .||||||
RBAM_016890__ 994 CCGAGCGCCCAGCTCCCGAAAAAATCAGCGCCGGCACCGG---CCAAAAA 1040
BSNT_02755___ 1044 TGAGCAACAGTTCATAACCTTTGATGAAAAGC-CTCCGGAAAGAAAAGTA 1092
.||.||.||.||.||.||.||.|| |.||||| |.||.||..|.|||.|.
RBAM_016890__ 1041 CGAACAGCAATTTATGACATTCGA-GGAAAGCGCGCCTGAGCGGAAACTT 1089
BSNT_02755___ 1093 CCGGAAAAAGCGCATGCGCCATCTTATTCACCAATGAAGCTCAGCTCAGT 1142
||.||||||.|||..|.|||.|||||.||||||||||||||.||.||.||
RBAM_016890__ 1090 CCTGAAAAAACGCCGGAGCCGTCTTACTCACCAATGAAGCTGAGTTCGGT 1139
BSNT_02755___ 1143 CGTGAAAGAGCCGATTGATGCGG-------AGGAAGAATTGCCTCCTCTC 1185
|||.|||||||| |||..||| | ||||||..| .|||||.|
RBAM_016890__ 1140 CGTAAAAGAGCC---TGAGCCGGTAATAATA-GAAGAAGAG-ATCCTCCC 1184
BSNT_02755___ 1186 CAATTTGATGCTCCATCTATCGTTGATCA------------GGAAC---- 1219
.|| |||.|| .||||| |||.|
RBAM_016890__ 1185 GAA--TGAAGC------------GGATCACGGAGTGCCGCCGGAGCTCGG 1220
BSNT_02755___ 1220 --------AAAC-------CCTTGAGGTGTCCGATGTTTCAGAA---GAA 1251
|||| ||| ||.||||||..|.|.||| |||
RBAM_016890__ 1221 TATGCCCGAAACGGCAGCGCCT----GTTTCCGATACTCCGGAACCGGAA 1266
BSNT_02755___ 1252 -CTGCCTGAAACATTTGAGCAGGAATGCCATGAGGAACAGCAGCAGCCAG 1300
|||.| |.||| ||.|||.| .||||
RBAM_016890__ 1267 GCTGTC-------TCTGA--AGAAATAC----GGGAA------------- 1290
BSNT_02755___ 1301 CGTCTGAGCGGGTTCCGATTATGTACCCGATCGGCCAGATGCACGGGACT 1350
||..|.||||||||.|||||.|||||||||||.|||||||||||.
RBAM_016890__ 1291 -----GAAAGAGTTCCGATGATGTATCCGATCGGCCAAATGCACGGGACA 1335
BSNT_02755___ 1351 TATATATTGGCACAAAACGAAAACGGCCTGTATATTATCGACCAGCACGC 1400
|||||.||.||.|||||||||||||||.|||||||.||.||||||||.||
RBAM_016890__ 1336 TATATTTTAGCTCAAAACGAAAACGGCTTGTATATCATTGACCAGCATGC 1385
BSNT_02755___ 1401 CGCCCAAGAACGTATTAAATATGAGTACTTTCGTGAAAAGGTGGGGGAGG 1450
.|||||||||||.||||||||.||.||.||.||.||.|||||.|||.|||
RBAM_016890__ 1386 GGCCCAAGAACGGATTAAATACGAATATTTCCGGGAGAAGGTCGGGCAGG 1435
BSNT_02755___ 1451 TTGAGCCTGAAGTGCAGGATATGATTGTACCGCTGACGTTCCACTACTCC 1500
|||||||||||||||||||||||||.||.|||||.||.||.||.||..|.
RBAM_016890__ 1436 TTGAGCCTGAAGTGCAGGATATGATCGTGCCGCTCACCTTTCATTATGCG 1485
BSNT_02755___ 1501 ACAAATGAGGCTTTGATTATTGAACAGCACAAACAAGAGCTCGAAAGCGT 1550
.|||||||.||..||||.|||||.|||||..|.||.|||||.||||||||
RBAM_016890__ 1486 GCAAATGAAGCGCTGATCATTGACCAGCATCAGCATGAGCTTGAAAGCGT 1535
BSNT_02755___ 1551 CGGTGTCTTTTTAGAGTCATTCGGCTCTAACAGTTACATCGTCCGCTGCC 1600
|||.||.||||||||..||||||||.|.|||||.||||||||.|||||||
RBAM_016890__ 1536 CGGAGTATTTTTAGAAGCATTCGGCACGAACAGCTACATCGTTCGCTGCC 1585
BSNT_02755___ 1601 ACCCGGCCTGGTTTCCAAAGGGAGAAGAAGCAGAGCTTATAGAAGAAATC 1650
|.|||||||||||||||||.||.||||||||.||.||.||.|||||||||
RBAM_016890__ 1586 ATCCGGCCTGGTTTCCAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATC 1635
BSNT_02755___ 1651 ATTCAGCAGGTGCTCGACTCCAAAAATATAGATATTAAAAAACTCCGCGA 1700
||||||||||||||.|||.|||||.|.||.||||||||.|||||.||.||
RBAM_016890__ 1636 ATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAGAAACTGCGGGA 1685
BSNT_02755___ 1701 GGAAGCGGCGATTATGATGAGCTGCAAAGGCTCCATCAAAGCAAATCGCC 1750
|||||||||.|||||||||||||||||||||||.||||||||.||.||||
RBAM_016890__ 1686 GGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGCC 1735
BSNT_02755___ 1751 ACCTCAGAAACGATGAAATCAAAGCGCTTCTGGACGACCTCCGAAGCACA 1800
|..|..|||||||.||||||||||||||..||||||||||.||..|.||.
RBAM_016890__ 1736 ATTTGCGAAACGACGAAATCAAAGCGCTCTTGGACGACCTGCGCCGAACG 1785
BSNT_02755___ 1801 TCAGACCCATTTACATGCCCGCACGGCCGCCCGATCATCATTCACCACTC 1850
.|||||||.||.|||||||||||||||||.||||||||.||.||||||..
RBAM_016890__ 1786 ACAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATCCACCACAG 1835
BSNT_02755___ 1851 GACATATGAGATGGAAAAGATGTTCAAACGCGTGATGTAG 1890
.||.|||||||||||.||.|||||.||.||.||||||||.
RBAM_016890__ 1836 TACGTATGAGATGGAGAAAATGTTTAAGCGTGTGATGTAA 1875
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