Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02748 and RBAM_016840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_02748___kbl.1.9828.seq
# -bsequence dna-align/RBAM_016840___kbl.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02748___kbl-RBAM_016840___kbl.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02748___kbl-RBAM_016840___kbl.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02748___kbl
# 2: RBAM_016840___kbl
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1200
# Identity: 906/1200 (75.5%)
# Similarity: 906/1200 (75.5%)
# Gaps: 45/1200 ( 3.8%)
# Score: 3331.0
#
#
#=======================================
BSNT_02748___ 1 ATGACAAAGGAATTTGAGTTTTTAAAAGCAGAGCTTGATAGTATGAAAGA 50
||| ||.||||||||.|||.||||||||||||||||||..||||||||
RBAM_016840__ 1 ATG---AAAGAATTTGAATTTCTAAAAGCAGAGCTTGATAAAATGAAAGA 47
BSNT_02748___ 51 AAACCATACATGGCAAGACATAAAACAGCTTGAATCTATGCAGGGCCCAT 100
|||..|.||.|||||..|.||.|||||..|||||.|.|.||||||.||.|
RBAM_016840__ 48 AAATAAAACGTGGCAGCAAATGAAACAAATTGAAACGAAGCAGGGTCCGT 97
BSNT_02748___ 101 TTGTCACAGTGAATCACCAAAAAGTCATTCAGCTATCTTCTAATAATTAC 150
..||...|||.||...|.||||.||.||.|||||.||.||.||.|||||.
RBAM_016840__ 98 CGGTGGAAGTCAAAGGCGAAAACGTGATACAGCTTTCATCGAACAATTAT 147
BSNT_02748___ 151 CTCGGATTCACTTCACATCCTAGACTCATCAACGCCG-CACAGGAGGCCG 199
|||||.||.||.||.|||||.||.||..||.|.||.| ||.|.| .||||
RBAM_016840__ 148 CTCGGTTTGACGTCGCATCCAAGGCTTGTCGAAGCGGCCAAACG-CGCCG 196
BSNT_02748___ 200 TTCAGCAGTAT--GGAGCCGGCACCGGATCAGTGAGAACGATTGCCGGTA 247
|.|.||.|| |||||.||.||.||.||.||..|.||.||.|||||.|
RBAM_016840__ 197 --CGGAAGAATTCGGAGCGGGTACGGGGTCCGTCCGGACAATCGCCGGAA 244
BSNT_02748___ 248 CATTTACAATGCATCAA-GAGCTTGAGAAAAAGCTGGCAGCCTTTAAAAA 296
||||.|||||||| ||| |||||.||||||||..|||||..|||||||||
RBAM_016840__ 245 CATTCACAATGCA-CAATGAGCTGGAGAAAAAATTGGCAAACTTTAAAAA 293
BSNT_02748___ 297 AACGGAGGCGGCACTTGTATTCCAATCAGGCTTCACAACAAACCAAGGCG 346
|||.||.|||||||||||.||.|||||.||.||||||||.||.||.||||
RBAM_016840__ 294 AACAGAAGCGGCACTTGTTTTTCAATCGGGGTTCACAACGAATCAGGGCG 343
BSNT_02748___ 347 TACTTTCAAGTATTCTATCAAAAGAGGATATTGTCATCTCAGATGAATTG 396
|.||.|||||.|||||..|||||||||||||.||.|||||.||.|||.||
RBAM_016840__ 344 TCCTATCAAGCATTCTTACAAAAGAGGATATCGTGATCTCTGACGAACTG 393
BSNT_02748___ 397 AACCATGCCTCTATTATTGACGGAATTCGACTGACAAAGGCGGATAAAAA 446
||||||||.||.|||||||||||.||..|.|||||.||.||.||||||||
RBAM_016840__ 394 AACCATGCTTCCATTATTGACGGGATCAGGCTGACGAAAGCAGATAAAAA 443
BSNT_02748___ 447 GGTGTATCAGCACGTCAATATGAGTGATTTAGAGCGGGTGCTGAGAAAGT 496
||||||.|..||.||..|||||...|||||.||..|||||||||.|||.|
RBAM_016840__ 444 GGTGTACCGCCATGTTGATATGGACGATTTGGAAAGGGTGCTGAAAAAAT 493
BSNT_02748___ 497 CAATGAATTATCGGATGCGTCTGATTGTGACAGACGGCGTATTTTCCATG 546
||||||||||.||.|||||.|||||.||.||.|||||||||||.||.|||
RBAM_016840__ 494 CAATGAATTACCGCATGCGCCTGATCGTCACCGACGGCGTATTCTCAATG 543
BSNT_02748___ 547 GATGGCAACATAGCTCCTCTGCCTGATATTGTAGAGCTCGCTGAGAAATA 596
||.||||||||.||||||.|||||||.||.||..|.||.||.|||...||
RBAM_016840__ 544 GACGGCAACATCGCTCCTTTGCCTGACATCGTCAAACTTGCGGAGGCGTA 593
BSNT_02748___ 597 TGACGCATTTGTGATGGTGGATGACGCCCATGCATCCGGAGTACTTGGCG 646
.||.||.|||||||||||.||.|||||.|||||.|||||.|||||.||..
RBAM_016840__ 594 CGATGCCTTTGTGATGGTCGACGACGCGCATGCTTCCGGCGTACTCGGAA 643
BSNT_02748___ 647 AAAACGGCAGGGGAACGGTGAATCACTTCGGTCTTGACGGCAGAGTTCAT 696
|||||||.|||||||||||.|||||||||||.||||||||.||||||||.
RBAM_016840__ 644 AAAACGGAAGGGGAACGGTTAATCACTTCGGGCTTGACGGAAGAGTTCAC 693
BSNT_02748___ 697 ATTCAGGTCGGAACATTAAGCAAGGCAATCGGAGTGCTCGGCGGCTACGC 746
||.|||||.||.|||||||||||.||.|||||||||||.|||||.|||||
RBAM_016840__ 694 ATACAGGTGGGCACATTAAGCAAAGCCATCGGAGTGCTTGGCGGTTACGC 743
BSNT_02748___ 747 TGCAGGTTCAAAGGTGCTGATCGATTATTTGCGCCATAAAGGCCGTCCAT 796
.|||||.||..||||.|||||||||||..|||||||||||||.||.||.|
RBAM_016840__ 744 CGCAGGGTCCCAGGTTCTGATCGATTACCTGCGCCATAAAGGGCGCCCTT 793
BSNT_02748___ 797 TTTTATTCAGCACATCTCATCCGCCGGCTGTCACTGCAGCTTGTATGGAA 846
|.|||||||||||.|||||||||||.||.||.||.||.||.||.||.|||
RBAM_016840__ 794 TCTTATTCAGCACTTCTCATCCGCCTGCGGTAACAGCCGCATGCATAGAA 843
BSNT_02748___ 847 GCGATTGATGTCTTGCTTGAAGAGCCGGAGCATATGG---AGCGCTTGTG 893
||.|||||.|||.||||.||||||||||||||||||| ||| |.||
RBAM_016840__ 844 GCCATTGACGTCCTGCTGGAAGAGCCGGAGCATATGGAAAAGC---TATG 890
BSNT_02748___ 894 GGAGAATACTGCCTATTTTAAAG-CAATGCTTGTGAAAATGGGTTTGACT 942
||||||.||.||.|||||.|||| ||| .||.||..|||||||..||||.
RBAM_016840__ 891 GGAGAACACGGCGTATTTCAAAGACAA-ACTGGTTCAAATGGGGCTGACC 939
BSNT_02748___ 943 CTCACAGAGAGTCAAACGCCGATTCTTCCTATTTTAATAGGTGATGAAGG 992
||||||.|.||..||||.|||||..|.||.||.||||||||.||.|||
RBAM_016840__ 940 CTCACAAAAAGCGAAACACCGATCGTGCCGATATTAATAGGGGAGGAA-- 987
BSNT_02748___ 993 TGTGGCAAAGC-----AATTTTCAGATCAGCTCCTTT------CTCACGG 1031
|..||||| .|||.||||| ||||| |.|.|||
RBAM_016840__ 988 ---GAAAAAGCCCAGGCATTATCAGA------CCTTTTATTGACCCGCGG 1028
BSNT_02748___ 1032 TGTTTTTGCCCAAAGTATCATTTTCCCGACTGTAGCAAAGGGAAAAGCCA 1081
.||.|||||.|||||.|||.|.|..|||||.||.||..|.||||||||.|
RBAM_016840__ 1029 CGTGTTTGCACAAAGCATCGTGTATCCGACGGTCGCCCAAGGAAAAGCGA 1078
BSNT_02748___ 1082 GAATTCGCACGATTATAACAGCAGAGCACACCAAAGATGAACTGGATCAG 1131
||||.|||||.|||||.||.||.|||||.||.||.||.||.||.||.|.|
RBAM_016840__ 1079 GAATCCGCACCATTATTACGGCGGAGCATACAAATGAGGAGCTTGACCGG 1128
BSNT_02748___ 1132 GCGCTT-GATGTCAT-CGAAAAGACGGCAAAGGAGCTCCAGCTATTGTAA 1179
|| ||| ||.||.|| ||...|| |.|||||.|||||.|||||..|||||
RBAM_016840__ 1129 GC-CTTGGAAGTTATCCGTTCAG-CCGCAAAAGAGCTTCAGCTTGTGTAA 1176
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