Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02747 and RBAM_016830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:42
# Commandline: needle
# -asequence dna-align/BSNT_02747___tdh.1.9828.seq
# -bsequence dna-align/RBAM_016830___tdh.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02747___tdh-RBAM_016830___tdh.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02747___tdh-RBAM_016830___tdh.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02747___tdh
# 2: RBAM_016830___tdh
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1075
# Identity: 770/1075 (71.6%)
# Similarity: 770/1075 (71.6%)
# Gaps: 62/1075 ( 5.8%)
# Score: 2658.5
#
#
#=======================================
BSNT_02747___ 1 ATGCAGAGTGGAAAGATGAAAGCTCT-------AATGAAAAAGGACGGGG 43
..|.|.|||||||||||||||.| |||||||| .|
RBAM_016830__ 1 ---TTGGGAGGAAAGATGAAAGCTATCGTCAAAAATGAAAA-------CG 40
BSNT_02747___ 44 CGTTCGGTGCTGTGCTGACTGAAGTTCCCATTCCTGAGATTGATAAACAT 93
|.|||||.||....||||..|||.|||||||.|||...|||.||.|..||
RBAM_016830__ 41 CTTTCGGAGCAACTCTGAAAGAAATTCCCATACCTTCCATTAATGAGAAT 90
BSNT_02747___ 94 GAAGTCCTCATAAAAGTGAAAGCCGCTTCCATATGCGGCACGGATGTCCA 143
|||||.|||||.|||||..|.|||||.||.||||||||.||.|||||.||
RBAM_016830__ 91 GAAGTTCTCATTAAAGTACAGGCCGCATCTATATGCGGTACAGATGTGCA 140
BSNT_02747___ 144 CATTTATAATTGGGATCAATGGGCACGTCAGA---GAATCAAAACACCCT 190
.||||||||||||||||||||||| .|||| |||||||||||||..
RBAM_016830__ 141 TATTTATAATTGGGATCAATGGGC---GCAGAAACGAATCAAAACACCTC 187
BSNT_02747___ 191 ATGTTTTCGGCCATGAGTTCAGCGGCATCGTAGAGGACGTGGGAGAGAAT 240
|.||.|||||.|||||.||||||||.|||||||.|||...|||..||.|.
RBAM_016830__ 188 AAGTATTCGGACATGAATTCAGCGGTATCGTAGCGGAAACGGGCAAGCAC 237
BSNT_02747___ 241 GTCATTAGTGTAAAAGTGGGAGAGTATGTGTCTGCGGAAACACACATTGT 290
||||..|.|||.|||...||.||.||.||.||.||.|||||.|||.|.||
RBAM_016830__ 238 GTCACAAATGTCAAAACAGGTGACTACGTTTCGGCTGAAACCCACTTCGT 287
BSNT_02747___ 291 CTGTGGTGAATGTGTCCCTTGCCTAACAGGAAAATCTCATGTGTGTACCA 340
|||.|||...|||||||||||..|||||||||||..|||||||||.|||.
RBAM_016830__ 288 CTGCGGTACTTGTGTCCCTTGTTTAACAGGAAAACATCATGTGTGCACCC 337
BSNT_02747___ 341 ATACTGCTATAATCGGAGTGGACACGGCAGGCTGTTTTGCGGAGTATGTA 390
||||....||..||||.||.||.||.||.||.|..||.||.||.|||||.
RBAM_016830__ 338 ATACAAAGATCCTCGGCGTAGATACAGCCGGTTCCTTCGCTGAATATGTC 387
BSNT_02747___ 391 AAAGTTCCAGCT-GATAATATTTGGAGAAATCCCGCTGATATGGA-CCCG 438
|||||.||.||| || |||.||||||.|||||||||||||||||| ||||
RBAM_016830__ 388 AAAGTGCCGGCTCGA-AATGTTTGGAAAAATCCCGCTGATATGGACCCCG 436
BSNT_02747___ 439 TCGATTGCTTCCATTCAAGAGCCTTTAGGAAATGCAGTTCATACCGTACT 488
.|| |.|||||..||||||||||..|.||.||.||.||.|||||.||..|
RBAM_016830__ 437 CCG-TCGCTTCTGTTCAAGAGCCGCTTGGCAACGCGGTGCATACGGTGTT 485
BSNT_02747___ 489 CGA---GAGCCAGCCTGCAGGAGGAACGACTGCAGTGATTGGATGCGGAC 535
.|| .|||||||.|||.||.||..|..|||||.|.||.||.|||||||
RBAM_016830__ 486 GGAAAGCAGCCAGCTTGCGGGCGGTTCCGCTGCAATTATCGGCTGCGGAC 535
BSNT_02747___ 536 CGATTGGTCTTATGGCTGTTGCGGTTGCAAAAGCAGCAGGAGCTTCTCAG 585
||||.||.||.|||||.||.||.||.||.|||||.||.||.||.||.|
RBAM_016830__ 536 CGATCGGGCTGATGGCGGTGGCAGTGGCTAAAGCGGCCGGTGCATCCC-- 583
BSNT_02747___ 586 GTGATAGCG---ATTGATAAGAATGAATACAGGCTGAGGCTTGCAAAACA 632
|| ||.||| ||||||||.|||||.||.||||||...|||||.||..|
RBAM_016830__ 584 GT-ATTGCGGCCATTGATAAAAATGATTATAGGCTGGCTCTTGCGAAGAA 632
BSNT_02747___ 633 AATGGGAGCGACTTGTACTGTTTCTATTGAAAAAGAAAACCCGCTCAAAA 682
|.|||||||.||....||..||||...|||.||.|||.|.|||||..|
RBAM_016830__ 633 ATTGGGAGCCACGATCACCATTTCAGCTGATAAGGAAGATCCGCTTGA-- 680
BSNT_02747___ 683 TTGTAAGCG---CTTTAACGAGTGGGGAA-GGAGCAGATCTTGTTTGTGA 728
.||.|.|| |.|||||..|.||.||| |||.| ||.|||||.||.||
RBAM_016830__ 681 -GGTGATCGACACCTTAACAGGCGGAGAAGGGATC-GACCTTGTCTGCGA 728
BSNT_02747___ 729 GATGTCGGGTCATCCCTCAGCGATTGCCCAAGGTCTTGCGATGGCTGCGA 778
.|||||.||.||.||..||||.||.||.|||||..|...||||||.||.|
RBAM_016830__ 729 AATGTCAGGCCACCCGGCAGCTATAGCACAAGGATTAAAGATGGCGGCCA 778
BSNT_02747___ 779 ATGGCGGAAGATTTCATATTCTCAGCTTGCCGGAACATCCGGTGACAATT 828
|.||.|||||.||.|||||.||.||..|||||||||.|||||||||..||
RBAM_016830__ 779 ACGGGGGAAGGTTCCATATGCTGAGTCTGCCGGAACGTCCGGTGACGGTT 828
BSNT_02747___ 829 GATTTGACGAATAAAGTGGTATTTAAAGGGCTTACCATCCAAGGAATCAC 878
||..||||.|||.|.|||||.||||||||.||||||.|||||||.|||||
RBAM_016830__ 829 GACCTGACAAATGACGTGGTGTTTAAAGGACTTACCGTCCAAGGCATCAC 878
BSNT_02747___ 879 AGGAAGAAAAATGTTTTCAACATGGCGCCAGGTGTCTCAGTTG-----AT 923
|||.||||||||||||..|||||||||.|||||.||.||..|| ||
RBAM_016830__ 879 AGGCAGAAAAATGTTTGAAACATGGCGGCAGGTATCGCACCTGCTTGAAT 928
BSNT_02747___ 924 CAGTTCAAACG----TGATCGATCTTGCACCTGTTATTACCCATCAGTTT 969
| || || |.|||||..|.||.||.||.||.||||||||.
RBAM_016830__ 929 C--------CGGCCTTG-TTGATCTGACGCCGGTGATCACGCATCAGTTG 969
BSNT_02747___ 970 CCGTTAGAGGAGTTTGAAAAAGGTTTCGAACTGATGAGAAGCGGGCAGTG 1019
|||.|.||.||.|||||||||||.||.||.||||||||||..||.|||||
RBAM_016830__ 970 CCGCTTGAAGACTTTGAAAAAGGGTTTGACCTGATGAGAAAGGGCCAGTG 1019
BSNT_02747___ 1020 CGGAAAAGTAATTTTAATTCCATAA 1044
|||.|||||.|||||.|||||||||
RBAM_016830__ 1020 CGGCAAAGTCATTTTGATTCCATAA 1044
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