Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02739 and RBAM_016770
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:41
# Commandline: needle
# -asequence dna-align/BSNT_02739___cinA.1.9828.seq
# -bsequence dna-align/RBAM_016770___cinA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02739___cinA-RBAM_016770___cinA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02739___cinA-RBAM_016770___cinA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02739___cinA
# 2: RBAM_016770___cinA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1273
# Identity: 994/1273 (78.1%)
# Similarity: 994/1273 (78.1%)
# Gaps: 44/1273 ( 3.5%)
# Score: 3894.0
#
#
#=======================================
BSNT_02739___ 1 ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCT 50
||||||.|..||||||||||||||||.|||||||||||.||.|||||.||
RBAM_016770__ 1 ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCT 50
BSNT_02739___ 51 GCTTGGCCAAATCGCCAATACAAATGCTCAATTTATCAGCAAACAGCTCG 100
|||.|||||.|||||||||||.||.||.||.||||||||.|||.||||.|
RBAM_016770__ 51 GCTAGGCCAGATCGCCAATACGAACGCGCAGTTTATCAGTAAAGAGCTGG 100
BSNT_02739___ 101 CTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCG 150
|.|||||.||.||.|||||.|||||||||||.||.|||||.||.||.|||
RBAM_016770__ 101 CGGAAATTGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCG 150
BSNT_02739___ 151 GAGCGGCTGAAGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCAT 200
||||||||.|||||.||||||||||||||.|||||.|||||.|||.|.||
RBAM_016770__ 151 GAGCGGCTTAAGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTAAT 200
BSNT_02739___ 201 TATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTGACGAAAGAAA 250
||||||||||||.||.||.|||||.||.||.||.|||.||||||||||||
RBAM_016770__ 201 TATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTGACGAAAGAAA 250
BSNT_02739___ 251 CGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTC 300
|.||||||||.||.|||||.||.|||||.||..|.|||||.||.||||||
RBAM_016770__ 251 CCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCATTC 300
BSNT_02739___ 301 CAATCCATTGAGGACTATTTC---AAACGAACAAAACGCACGATGTCACC 347
|..||.||.||.||.|||||| || |||||||||.||.|||||.||
RBAM_016770__ 301 CGGTCGATCGAAGAATATTTCGCGAA---AACAAAACGGACCATGTCGCC 347
BSNT_02739___ 348 TAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGA 397
.||||||||.|||||||||||.||.||.||.|||||.|||||..||||||
RBAM_016770__ 348 GAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGA 397
BSNT_02739___ 398 ATCACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGC----- 442
||||.||.||.|||||.|||||||||||..|||||||.| ||
RBAM_016770__ 398 ATCATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACG----GCTCAAG 443
BSNT_02739___ 443 GCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTGCGTCCAATGTTT 492
||| |||||||||.|||||.||.|||||||||||..|||||||.||||||
RBAM_016770__ 444 GCT-TTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTGCGTCCGATGTTT 492
BSNT_02739___ 493 GAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAA 542
|||||.||.||.|||||.||.||.||.||||||.|.|||||.|||||.||
RBAM_016770__ 493 GAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAA 542
BSNT_02739___ 543 AATTGTGTCAACCGTTCTTCGCTTTTTCGGTATCGGTGAATCTCAGCTTG 592
|||.||.||||||||.||.||.||||||||.|||||||||||.|||||||
RBAM_016770__ 543 AATCGTTTCAACCGTGCTGCGGTTTTTCGGAATCGGTGAATCCCAGCTTG 592
BSNT_02739___ 593 AAGCCGATTTGGAAGATATTATTGATGCGCAAACCAATCCGACAATTGCG 642
||||.|||||.||||||||.|||||||||||.||.||.|||||.||||||
RBAM_016770__ 593 AAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTGCG 642
BSNT_02739___ 643 CCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGC 692
||..|.||.|||||.||||||||.|||||||||.|.||.||.|||||.||
RBAM_016770__ 643 CCGCTTGCCGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGC 692
BSNT_02739___ 693 CGATGAAAAGGAAACAGAGCGTCTGTTAAAAGAAACAGAGGCCGTTATCT 742
|||.|||||.||||||||.||.||.|||||||||||.||.||||..||.|
RBAM_016770__ 693 CGACGAAAAAGAAACAGAACGGCTTTTAAAAGAAACGGAAGCCGCCATTT 742
BSNT_02739___ 743 TAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTA 792
||||.||||||||||||||||||||.||.||.||||||||.|||||.||.
RBAM_016770__ 743 TAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTG 792
BSNT_02739___ 793 AAAGAGCTATCTATAGCGTGCAAGGAAAAAGGCATTACAATTTCTGCGGC 842
||.|||||.||.|.|||.||||...||||.||.|||||.|||||..|.||
RBAM_016770__ 793 AAGGAGCTTTCAAAAGCATGCAGACAAAACGGAATTACGATTTCCTCTGC 842
BSNT_02739___ 843 AGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGACGGATCATAGCG 892
.|||||||||||.||.||.||||||||.||.|||.||||.|||...||||
RBAM_016770__ 843 CGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGACTGATTTAAGCG 892
BSNT_02739___ 893 GTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTG 942
||||.||..||.|||||||.|||||||||||.||.|||.|..||..||||
RBAM_016770__ 893 GTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTG 942
BSNT_02739___ 943 AAGCAGAATGTGCTTGGTGTCAAGAAGGAAACATTAGATCGTT------- 985
||.|||.|||||||.||.|| ||||..|.||| ||.|
RBAM_016770__ 943 AAACAGCATGTGCTCGGCGT-------GAAAGCTGAGA-CGCTCGCAGAA 984
BSNT_02739___ 986 -TTGGGGCGGTCAGCAAGGAGTGCGCATCCGAA----CTGGCTAAG--GG 1028
..||.|||||||||||.||||| |.|||| ||.|| || ||
RBAM_016770__ 985 AGCGGAGCGGTCAGCAAAGAGTG----TGCGAAAGAGCTTGC--AGCCGG 1028
BSNT_02739___ 1029 TGTTCAAAAACTCACTGGCAGCGATATCGGCATCAGCTTTACTGGTGTAG 1078
|||...|||.||.||.||.|||||||||||||||||||||||.||.||.|
RBAM_016770__ 1029 TGTGAGAAAGCTGACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTGG 1078
BSNT_02739___ 1079 CAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGTTTATCGGC 1128
|.||.||.||..|.||.||||||||||.|||.||.|..||.|||||||||
RBAM_016770__ 1079 CGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCTTTATCGGC 1128
BSNT_02739___ 1129 ATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTC 1178
|||||.||..|.||.|||||||||||.|||||.|||.|||||||.|||||
RBAM_016770__ 1129 ATTTCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTC 1178
BSNT_02739___ 1179 CAGAACGGGGATCAGAAAACGCGGCGCTAAATACGGCTGCCATTTAATCT 1228
.|||||.||.||||||||.||.|.|||||||||||||||||||.|.||.|
RBAM_016770__ 1179 AAGAACCGGAATCAGAAAGCGTGCCGCTAAATACGGCTGCCATCTCATTT 1228
BSNT_02739___ 1229 TAAAGCTTTTAGAGCAAAAATAA 1251
|.||..|..|.||.|||||||||
RBAM_016770__ 1229 TGAAAATGCTGGATCAAAAATAA 1251
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