Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02731 and RBAM_016670
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:40
# Commandline: needle
# -asequence dna-align/BSNT_02731.1.9828.seq
# -bsequence dna-align/RBAM_016670.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02731-RBAM_016670.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02731-RBAM_016670.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02731
# 2: RBAM_016670
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1354
# Identity: 915/1354 (67.6%)
# Similarity: 915/1354 (67.6%)
# Gaps: 146/1354 (10.8%)
# Score: 3264.0
#
#
#=======================================
BSNT_02731 0 -------------------------------------------------- 0
RBAM_016670 1 ATGTGTCTGTTTTTTTATTTGCCGTTTCAGTACATACTTTATTTTCTGCA 50
BSNT_02731 1 ----------------------------------------------ATGT 4
|.||
RBAM_016670 51 AGGCACAATAAAACAGGAAACAACCAAGTATAGTGAATGGGTGAATAAGT 100
BSNT_02731 5 TGAG--AG-AGAAAAGTGGAATGAAAAATATTATTGCATTGTCTTCCGTA 51
|||| || ||||||.|||||.|||||||||.|||||..||.||||.|||
RBAM_016670 101 TGAGTAAGAAGAAAAATGGAACGAAAAATATCATTGCTCTGGCTTCTGTA 150
BSNT_02731 52 CCGCTTGTGATGACACTCGGGAACTCCATGCTGATTCCTGTTCTTCCGAT 101
|||||.|||||||||||||||||.|||||||||||||||||.||||||||
RBAM_016670 151 CCGCTCGTGATGACACTCGGGAATTCCATGCTGATTCCTGTGCTTCCGAT 200
BSNT_02731 102 GATGGAGAAAAAGCTGTCTGTGACTTCATTTCAAGTATCTTTAATCATTA 151
|||.||.||.||||||||..|..|.||.|||||||||||.|||||.||.|
RBAM_016670 201 GATTGAAAAGAAGCTGTCCATATCGTCTTTTCAAGTATCGTTAATTATAA 250
BSNT_02731 152 CTGTATATTCAGTAGTAGCAATTATTTGCATTCCGATTGCCGGATATTTG 201
|.||.|||||..|.||.||.||||||||.||||||||||||||||||.||
RBAM_016670 251 CGGTCTATTCGATTGTGGCGATTATTTGTATTCCGATTGCCGGATATCTG 300
BSNT_02731 202 TCGGATCGTTTCGGGAGAAAAAAAATATTGCTTCCATGCCTCCTCATTGC 251
||.|||...|||||.||||||||..|..|.||.||.||.||.|||||.||
RBAM_016670 301 TCCGATAAATTCGGAAGAAAAAAGGTTCTTCTGCCTTGTCTTCTCATAGC 350
BSNT_02731 252 AGGATTGGGGGGAGCCGTAGCTGCTTTTGCCTCGACCTATATGAAAAATC 301
.||...|||.|||||..|.||.||..|.||.||.|||....|.||..|||
RBAM_016670 351 CGGTGCGGGCGGAGCGCTTGCCGCGATAGCTTCCACCGCGTTCAAGCATC 400
BSNT_02731 302 CTTATGCTATGATCTTGGCGGGGCGGGTTCTTCAAGGCATTGGTTCTGCA 351
|||||.|.||.|||||||||||||||||.||.||.||.||.|||||.|||
RBAM_016670 401 CTTATCCCATTATCTTGGCGGGGCGGGTGCTGCAGGGAATCGGTTCGGCA 450
BSNT_02731 352 GGTGCCGCTCCGATTGTCATGCCGTTTATCGGCGACCTGTTTAAAGGAGA 401
||.||.|||||..|.||.||||||||||||||.||..|.||.|||||.||
RBAM_016670 451 GGGGCGGCTCCTGTAGTGATGCCGTTTATCGGTGATTTATTCAAAGGGGA 500
BSNT_02731 402 CGATGAAAAGGTCAGCGCGGGTCTTGGCGATATTGAAACCGCCAACACGT 451
.|||||...|.|.|.||||||.||.|||||||||||.||..|.|||||..
RBAM_016670 501 TGATGAGCGGATTACCGCGGGGCTCGGCGATATTGAGACGTCTAACACTG 550
BSNT_02731 452 CAGGGAAGGTACTGAGTCCCATACTTGGAGCCTTACTGGCTTCTTGGTAT 501
|.|||||.|||.|.||.||.||.||.||..|..|..||||..|.||||.|
RBAM_016670 551 CCGGGAAAGTAATAAGCCCGATTCTCGGTTCGCTCTTGGCCGCATGGTTT 600
BSNT_02731 502 TGGTTTGTACCATTTTGGTTTATTCCGTTTTTCTGTTTGATCAGCTTTTT 551
||||||.|.|||||||||||.|||||||||||.|...|.|||||.|||||
RBAM_016670 601 TGGTTTATGCCATTTTGGTTCATTCCGTTTTTTTCGCTCATCAGTTTTTT 650
BSNT_02731 552 GCTCGTATTGTTTTTGGTGGCCAAGCCTGAAGAAGATGAAGATGCGCCTG 601
.||||||||||||||||||||.|||||.||.|||.|..||||.||||||.
RBAM_016670 651 TCTCGTATTGTTTTTGGTGGCAAAGCCGGAGGAACAAAAAGAAGCGCCTT 700
BSNT_02731 602 CTGTTTCTGAGTTTATTAAGAGTGTGAAGAAA----------ATTTTTAA 641
||.||||.||.|| |||||| ||| ||.|||||
RBAM_016670 701 CTATTTCCGAATT---------TGTGAA-AAATGTCGGCCGCATATTTAA 740
BSNT_02731 642 ACAGGATGGTCGCTGGCTTTATACGGTCTTCATTATCGGGTGTGTCATTA 691
.|..||.||.||||||||.|.||||||.||.||.|||||.||.||.||||
RBAM_016670 741 GCGTGACGGACGCTGGCTCTTTACGGTTTTTATCATCGGCTGCGTGATTA 790
BSNT_02731 692 TGTTTTTGTTATTTGGCGTATTATTTTATTTATCAGATACGCTGGAGAAC 741
|||||||..|.||.||.||..|.||||||||||||||..|.||||||||.
RBAM_016670 791 TGTTTTTACTGTTCGGGGTTCTTTTTTATTTATCAGACTCACTGGAGAAG 840
BSNT_02731 742 AAGTATGCTATTGACGGAGTAGCTAAAG--GCGGATTACTGGCAATCCCA 789
||.||.|..||||||||.||.||||||| |||..|| ||||||||||.
RBAM_016670 841 AAATACGGCATTGACGGTGTGGCTAAAGGAGCGCTTT--TGGCAATCCCG 888
BSNT_02731 790 CTTTTGTTTTTGTCAACCAGTTCTTTTATAGCTGGCAAAAAGATCGGTAA 839
|||||.|||.|.||...||||||.|.||||.|.||||..||.|||||.||
RBAM_016670 889 CTTTTATTTCTATCCGTCAGTTCATATATATCAGGCAGGAAAATCGGAAA 938
BSNT_02731 840 AGATAAAGGCCGAATGAAATTTTGCGTTGTTACAGGAATGATTCTGT--- 886
|||..|||||..||||||.||||||.|.|||...||||||| ||
RBAM_016670 939 AGACCAAGGCAAAATGAAGTTTTGCATCGTTTTCGGAATGA----GTGCC 984
BSNT_02731 887 -TAACCCTTTCGTTTATTGCCTTGTGGTGGAACCACAGTTTTTATTTTTT 935
|.||.||.||||||||.|.|.|.||||||||.||||||||||||||.||
RBAM_016670 985 GTGACACTGTCGTTTATCGGCCTATGGTGGAATCACAGTTTTTATTTATT 1034
BSNT_02731 936 ATTTGTCTTTTTAAGCTTTGGCGGGATTGGGATTGGAATGGCTCTTCCTG 985
||||.|||||||..|..|..||||.||.||.||.||||||||..|.||.|
RBAM_016670 1035 ATTTATCTTTTTGTGTGTCAGCGGTATCGGTATCGGAATGGCATTGCCGG 1084
BSNT_02731 986 CTTTAGATGCACTGATAACCGAAGGGATTGAAAGTGAACAATGCGGAACC 1035
|||||||.||..|.||.||.|||||..|.||.|..||..|||..||||||
RBAM_016670 1085 CTTTAGACGCTGTCATCACAGAAGGCGTAGACAACGAGGAATCGGGAACC 1134
BSNT_02731 1036 ATTTCCTCCTTCTACAATAGCATGCGCTTTATAGGAGTAGCTCTCGGTCC 1085
||..||||.||.||.||.||||||||.|||||.||||||||....||.||
RBAM_016670 1135 ATCACCTCATTTTATAACAGCATGCGGTTTATCGGAGTAGCGGCGGGACC 1184
BSNT_02731 1086 ACCTGTTTTTGCTGCATTAATGTCTAATGCAAACTGGATTATTTTCATAC 1135
.||..|.||||||||..|.|||||.||||||..||||.|.|||||.||..
RBAM_016670 1185 GCCGATCTTTGCTGCCCTGATGTCAAATGCAGGCTGGCTGATTTTTATTT 1234
BSNT_02731 1136 TCTCGGCGTTTTGCAGCATCGTTTCTTTATTTTTAGTGCTCTTTACTGTA 1185
|.||.||.||||||.||||.||.|||.|||||||||.|||.||.|.|.|
RBAM_016670 1235 TATCCGCTTTTTGCGGCATTGTGTCTGTATTTTTAGCGCTGTTAAATAT- 1283
BSNT_02731 1186 GATGCTAAAAAAAGTGAAGAAGAAGAAAAAAA------CTTAGGGACGGT 1229
||.|..| .|||.|.|||||||||| .|||..||||||
RBAM_016670 1284 ----CTCATCA----CAAGCAAAAGAAAAAAAGGAATCATTAAAGACGGT 1325
BSNT_02731 1230 CTAG 1233
.||.
RBAM_016670 1326 GTAA 1329
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