Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02704 and RBAM_016470
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:38
# Commandline: needle
# -asequence dna-align/BSNT_02704___infB.1.9828.seq
# -bsequence dna-align/RBAM_016470___infB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02704___infB-RBAM_016470___infB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02704___infB-RBAM_016470___infB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02704___infB
# 2: RBAM_016470___infB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2154
# Identity: 1848/2154 (85.8%)
# Similarity: 1848/2154 (85.8%)
# Gaps: 6/2154 ( 0.3%)
# Score: 8018.0
#
#
#=======================================
BSNT_02704___ 1 ATGGCTAAAATGAGAGTATACGAATATGCAAAAGCGTTAAATGTTTCAAG 50
|||||||||||||||||.|||||||||||||||||..|.|||||||||||
RBAM_016470__ 1 ATGGCTAAAATGAGAGTTTACGAATATGCAAAAGCCATCAATGTTTCAAG 50
BSNT_02704___ 51 TAAGGAAATTTTGACCGCACTGAAGAACATGGATTTAGAAGTGAATAATC 100
.||||||||||||||.||.|||||.|||||||||.|||.|||.|||||.|
RBAM_016470__ 51 CAAGGAAATTTTGACTGCGCTGAAAAACATGGATATAGTAGTAAATAACC 100
BSNT_02704___ 101 ACATGGCCATGCTTGAAGAAAAGGCCATTAAAAAGCTAGATGCCAAATAT 150
|.|||||.|||||||||||||||.|||||||..||||.|||||.||||.|
RBAM_016470__ 101 ATATGGCAATGCTTGAAGAAAAGACCATTAAGCAGCTTGATGCGAAATTT 150
BSNT_02704___ 151 AAAAAAGGCGGCGCAGCTGCTAAATCTCAAAAGCCAGCAGAAACGAACAA 200
||||||||||||||.|..|.||.||||||.|||||.||.|||||||||||
RBAM_016470__ 151 AAAAAAGGCGGCGCCGGCGTTACATCTCAGAAGCCTGCGGAAACGAACAA 200
BSNT_02704___ 201 AAACAAACAGCCACAAGGGGTTAATCAGCAATCAGCTGGAAATCAACCAA 250
||||| ||||.||||||.||||||||||..|.|||||.||||||||||
RBAM_016470__ 201 AAACA---AGCCGCAAGGGATTAATCAGCAGCCTGCTGGGAATCAACCAA 247
BSNT_02704___ 251 ATAAAATTCGAGACGGAAAGAAGAATGACGTGCAGAATAATCAATTTAAC 300
|.||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_016470__ 248 ACAAAATTCGAGACGGAAAGAAGAATGACGTGCAGAATAATCAATTTAAC 297
BSNT_02704___ 301 AAAAACAAGAAGAATAACAACAACAAAAAAAATAAACGCAA---CAACAA 347
||||||||||||||||||||||||||.|||||.|||..||| |||..|
RBAM_016470__ 298 AAAAACAAGAAGAATAACAACAACAACAAAAACAAAAACAAACGCAATCA 347
BSNT_02704___ 348 CAATAATAAAAACCAACATCAGCAAAAGCCTGTAAAGCCGAAAAAAGAGC 397
.||.||.|||||.||..||||||||||.||..|.||||||||||||||||
RBAM_016470__ 348 TAACAACAAAAATCAGTATCAGCAAAAACCGCTGAAGCCGAAAAAAGAGC 397
BSNT_02704___ 398 TTCCTGAGAAAATTACATTCTCTGGCACTTTAACAGTTGGCGCACTTGCT 447
||||||||||||||||.||.||.|||.||||||||||.||.||..|.||.
RBAM_016470__ 398 TTCCTGAGAAAATTACGTTTTCCGGCTCTTTAACAGTCGGAGCTTTAGCC 447
BSNT_02704___ 448 GAAGAGCTTGGCAAAGAGCCTTCAGAAATCATTAAAAAGCTGATGCTTCT 497
||.||.||.|||||||||||.||.|||.||||||||||.|||||||||||
RBAM_016470__ 448 GAGGAACTGGGCAAAGAGCCGTCTGAACTCATTAAAAAACTGATGCTTCT 497
BSNT_02704___ 498 TGGCGTAATGGCAACTATTAACCAAGAGCTTGATAAAGACACAATCGAAC 547
.|||||||||||.||.||||||||.||||||||.||||||||||||||||
RBAM_016470__ 498 GGGCGTAATGGCTACCATTAACCAGGAGCTTGACAAAGACACAATCGAAC 547
BSNT_02704___ 548 TCATTGCATCAGAATATGGTGTTGAAACAGAAGAGGTCATTGTGCTTGAA 597
|.||.|||||.|||||.|||||.|||||||||||.||.||||||||||||
RBAM_016470__ 548 TGATCGCATCTGAATACGGTGTAGAAACAGAAGAAGTGATTGTGCTTGAA 597
BSNT_02704___ 598 GAAACAGAGCTGGAAAAATACGAAGAGCCTGATAATGAAGAGGATCTTGA 647
|||||.|||||.||||||||.||||||.||||.||.|||||.||||||.|
RBAM_016470__ 598 GAAACTGAGCTTGAAAAATATGAAGAGGCTGACAAAGAAGAAGATCTTCA 647
BSNT_02704___ 648 AATTCGTCCTCCTGTCGTGACAATCATGGGCCACGTTGACCATGGGAAAA 697
|||.|||||.|||||||||||.||||||||||||||||||||.|||||||
RBAM_016470__ 648 AATCCGTCCGCCTGTCGTGACGATCATGGGCCACGTTGACCACGGGAAAA 697
BSNT_02704___ 698 CAACGCTTCTTGACAGCATCCGTAAAACAAAGGTTGTTGAAGGAGAAGCA 747
|.||.||.||||||||||||.|.||||||||.|||||||||||.|||||.
RBAM_016470__ 698 CGACCCTCCTTGACAGCATCAGAAAAACAAAAGTTGTTGAAGGTGAAGCC 747
BSNT_02704___ 748 GGCGGAATCACTCAGCATATCGGCGCTTATCAAATTGAAGAGAACGGCAA 797
|||||||||||.|||||||||||.|||||.||.||.|||||.||||||||
RBAM_016470__ 748 GGCGGAATCACCCAGCATATCGGGGCTTACCAGATCGAAGAAAACGGCAA 797
BSNT_02704___ 798 GAAAATCACGTTTTTGGATACACCGGGCCACGCCGCATTTACAACAATGC 847
.|||||||||||.||.|||||.|||||.|||||.||.||.||||||||||
RBAM_016470__ 798 AAAAATCACGTTCTTAGATACTCCGGGACACGCGGCGTTCACAACAATGC 847
BSNT_02704___ 848 GTGCACGCGGTGCAGAAGTAACTGATATTACGATTCTTGTCGTAGCTGCC 897
||||.||||||||.|||||||||||||||||.|||.|.||||||||.||.
RBAM_016470__ 848 GTGCGCGCGGTGCGGAAGTAACTGATATTACCATTTTAGTCGTAGCGGCT 897
BSNT_02704___ 898 GATGACGGTGTCATGCCGCAAACAGTTGAAGCGATTAACCATGCAAAAGC 947
||||||||.||.||||||||.|||||.|||||.||.||||||||.|||||
RBAM_016470__ 898 GATGACGGCGTTATGCCGCAGACAGTCGAAGCCATCAACCATGCGAAAGC 947
BSNT_02704___ 948 AGCAGAGGTTCCAATCATCGTTGCTGTGAATAAAATAGATAAAGAATCCG 997
.||.||||||||.||.||||||||.|||||||||.|.|||||||||..||
RBAM_016470__ 948 GGCTGAGGTTCCGATTATCGTTGCCGTGAATAAAGTGGATAAAGAAAGCG 997
BSNT_02704___ 998 CAAACCCTGACCGTGTGATGCAAGAACTGACGGAATACGGACTTGTCCCT 1047
|.||||||||||||||.|||||.||.|||||.|||||||||||.||.|||
RBAM_016470__ 998 CGAACCCTGACCGTGTCATGCAGGAGCTGACTGAATACGGACTCGTTCCT 1047
BSNT_02704___ 1048 GAAGCTTGGGGCGGAGAAACCATTTTTGTGCCGCTTTCCGCTTTAACTGG 1097
|||||.|||||.||||||||.|||||.||.||.||.||||||.|.||.||
RBAM_016470__ 1048 GAAGCATGGGGAGGAGAAACGATTTTCGTTCCTCTGTCCGCTCTTACAGG 1097
BSNT_02704___ 1098 AAAAGGCATTGATGAGCTCGTTGAAATGATTTTGCTTGTCAGTGAGGTAG 1147
.||.||.|||||.|||||.||.|||||||||.|||||||||||||.||.|
RBAM_016470__ 1098 CAAGGGAATTGACGAGCTTGTCGAAATGATTCTGCTTGTCAGTGAAGTGG 1147
BSNT_02704___ 1148 AGGAACTGAAAGCGAATCCGAACCGTCAGGCAAAAGGAACGGTTATTGAA 1197
|.||.||||||||.||||||||||||||||||||||||||||||||||||
RBAM_016470__ 1148 AAGAGCTGAAAGCCAATCCGAACCGTCAGGCAAAAGGAACGGTTATTGAA 1197
BSNT_02704___ 1198 GCTGAACTCGATAAAGGCAGAGGGTCAGTCGCGACATTGCTCGTACAGAC 1247
|||||.|||||||||||.|||||.||.|||||||||.|.|||||.||.||
RBAM_016470__ 1198 GCTGAGCTCGATAAAGGAAGAGGATCTGTCGCGACACTTCTCGTTCAAAC 1247
BSNT_02704___ 1248 TGGAACACTGCATGTCGGTGATCCGATCGTAGTCGGCAATACATTTGGCC 1297
.||||||.||.|||||||.|||||||||||.|||||.||||||||.||||
RBAM_016470__ 1248 GGGAACATTGAATGTCGGAGATCCGATCGTTGTCGGAAATACATTCGGCC 1297
BSNT_02704___ 1298 GTGTCCGTGCAATGGTTAACGACATTGGCCGCCGTGTGAAAACTGCCGGC 1347
|.||.||.||.|||||.||.||..|.||||||||.||||||||.|||||.
RBAM_016470__ 1298 GCGTGCGGGCCATGGTCAATGATCTCGGCCGCCGCGTGAAAACAGCCGGA 1347
BSNT_02704___ 1348 CCGTCAACTCCGGTTGAAATTACCGGTTTGAATGATGTCCCTCAAGCGGG 1397
|||||.||.||.||.||||||||.||.||.||.||.||.||.||.||.||
RBAM_016470__ 1348 CCGTCCACACCTGTAGAAATTACGGGCTTAAACGACGTACCGCAGGCTGG 1397
BSNT_02704___ 1398 AGACCAATTCCTTGTCTTTAAGGATGAAAAAACAGCTCGTTCTGTCGGTG 1447
.||.||||||||.||||||||.||.|||||||||||.|||||||||||||
RBAM_016470__ 1398 CGATCAATTCCTCGTCTTTAAAGACGAAAAAACAGCCCGTTCTGTCGGTG 1447
BSNT_02704___ 1448 AAGCCCGTGCTTCGAAACAGCTTGAAGAGCAGCGCAGCGATAAAGCGAAG 1497
||||.||.|||||.||.||.||.|||||.|||||||||||.|||||||||
RBAM_016470__ 1448 AAGCACGCGCTTCCAAGCAACTGGAAGAACAGCGCAGCGACAAAGCGAAG 1497
BSNT_02704___ 1498 CTCAGTCTTGATGATTTATTCGAGCAAATTAAGCAAGGTGATGTAAAAGA 1547
||.||.||.||||||.|.||.||.||||||||.|||||.|||||.|||||
RBAM_016470__ 1498 CTGAGCCTCGATGATCTGTTTGAACAAATTAAACAAGGCGATGTCAAAGA 1547
BSNT_02704___ 1548 CATCAACCTCATCGTAAAAGCTGACGTTCAAGGATCTGCTGAAGCTTTAA 1597
||||||..|.|||||||||||||||||||||||.||.||.|||||.||||
RBAM_016470__ 1548 CATCAATTTAATCGTAAAAGCTGACGTTCAAGGTTCAGCCGAAGCGTTAA 1597
BSNT_02704___ 1598 CGGCTGCACTTCAAAAAATTGAAGTAGAAGGCGTTAAAGTGAAAATCATC 1647
|.||.||.||||||||||||||||||||||||||.||||||||||||||.
RBAM_016470__ 1598 CAGCCGCTCTTCAAAAAATTGAAGTAGAAGGCGTAAAAGTGAAAATCATT 1647
BSNT_02704___ 1648 CATACAGGCGTTGGTGCGATTACTGAATCAGACATTATCTTGGCATCTGC 1697
||.||||||||.|||||||||||.|||||||||||.||..|.||||||||
RBAM_016470__ 1648 CACACAGGCGTCGGTGCGATTACGGAATCAGACATCATTCTCGCATCTGC 1697
BSNT_02704___ 1698 TTCCAATGCAATTGTTATCGGGTTTAATGTGAGACCGGACGGAAATGCTA 1747
|||.||||||||.||||||||||||||||||.|.||.|||||||||||||
RBAM_016470__ 1698 TTCAAATGCAATCGTTATCGGGTTTAATGTGCGCCCAGACGGAAATGCTA 1747
BSNT_02704___ 1748 AGAGTACGGCTGAAGCTGAAAATGTAGATATTCGACTTCACCGTATCATT 1797
||||.||||||||||||||||||||||||||.||.|||||||||||||||
RBAM_016470__ 1748 AGAGCACGGCTGAAGCTGAAAATGTAGATATCCGTCTTCACCGTATCATT 1797
BSNT_02704___ 1798 TACAAAGTAATCGACGAGATTGAAGCTGCCATGAAAGGTATGCTTGATCC 1847
||||||||.|||||.||.||||||||.||.||||||||.|||||||||||
RBAM_016470__ 1798 TACAAAGTCATCGAAGAAATTGAAGCGGCGATGAAAGGAATGCTTGATCC 1847
BSNT_02704___ 1848 TGAATATGAAGAAAAAGTAATTGGTCAAGTAGAAGTACGCCAAACATTCA 1897
||||||.|||||||||||.||.|||||.||.|||||.|||||||||||||
RBAM_016470__ 1848 TGAATACGAAGAAAAAGTCATCGGTCAGGTTGAAGTGCGCCAAACATTCA 1897
BSNT_02704___ 1898 AAGTATCTAAAATCGGTACAATTGCCGGCGGATATGTTACTGAAGGAACC 1947
||||.||.||||||||.||.|||||||||||||||||.||.||.||...|
RBAM_016470__ 1898 AAGTGTCGAAAATCGGCACGATTGCCGGCGGATATGTAACAGACGGCCAC 1947
BSNT_02704___ 1948 ATTACGCGCGACAGCGGCCTCCGTTTAATTCGTGACGGCGTCGTCATCTT 1997
|||||.||.||||||||.|||||..|.||.|||||||||||.||||||||
RBAM_016470__ 1948 ATTACACGTGACAGCGGACTCCGCCTGATCCGTGACGGCGTGGTCATCTT 1997
BSNT_02704___ 1998 TGAAGGCGAAGTAGATGTTCTGAAACGCTTTAAAGACGATGTGAAAGAAG 2047
.|||||.||||||||.||||||||||||||.|||||.|||||||||||||
RBAM_016470__ 1998 CGAAGGGGAAGTAGACGTTCTGAAACGCTTCAAAGATGATGTGAAAGAAG 2047
BSNT_02704___ 2048 TTTCACAAGGCTATGAATGTGGTATTACAATTAAGAAATACAATGACATT 2097
||||||||||.|||||||||||||||||||||||||||||||||||||||
RBAM_016470__ 2048 TTTCACAAGGATATGAATGTGGTATTACAATTAAGAAATACAATGACATT 2097
BSNT_02704___ 2098 CGTGAAGGTGACATCCTTGAAGCGTTTGTCATGCAAGAAATTGAAAGAAC 2147
||.|||||.||||||.|||||||||.|||||||||.|||||.|||||||.
RBAM_016470__ 2098 CGCGAAGGCGACATCATTGAAGCGTATGTCATGCAGGAAATCGAAAGAAA 2147
BSNT_02704___ 2148 GTGA 2151
||||
RBAM_016470__ 2148 GTGA 2151
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