Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02689 and RBAM_016360
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:35
# Commandline: needle
# -asequence dna-align/BSNT_02689___frr.1.9828.seq
# -bsequence dna-align/RBAM_016360___frr.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02689___frr-RBAM_016360___frr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02689___frr-RBAM_016360___frr.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02689___frr
# 2: RBAM_016360___frr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 560
# Identity: 474/560 (84.6%)
# Similarity: 474/560 (84.6%)
# Gaps: 4/560 ( 0.7%)
# Score: 2002.0
#
#
#=======================================
BSNT_02689___ 1 GTGTCAAAAGAAGTATTAACTCAAACAAAAGAAAAAATGGAAAAAGCAAT 50
.|||||||.|||||||||||.||||||||||||...|||||||||||..|
RBAM_016360__ 1 TTGTCAAACGAAGTATTAACACAAACAAAAGAACGCATGGAAAAAGCGGT 50
BSNT_02689___ 51 TGCTGCTTA-TCAGCGCGAATTGGCTACTGTACGCGCAGGCCGTGCAAAT 99
|||.||||| ||| ||.||||||||..|.||.||||||||.|||||.||.
RBAM_016360__ 51 TGCCGCTTATTCA-CGTGAATTGGCGTCAGTCCGCGCAGGACGTGCCAAC 99
BSNT_02689___ 100 CCATCATTATTAGATAAAGTAACGGTTGAATATTACGGAGCGCAGACACC 149
|||||..||||.||||||||.||.||.|||||.|||||.||.||.|||||
RBAM_016360__ 100 CCATCTCTATTGGATAAAGTGACAGTAGAATACTACGGTGCCCAAACACC 149
BSNT_02689___ 150 TTTAAATCAGTTGTCTTCTATTAACGTGCCTGAAGCTCGTATGCTCGTTA 199
||||||.|||.|||||||.||.||.|||||||||||.||||||||.|||.
RBAM_016360__ 150 TTTAAACCAGCTGTCTTCCATCAATGTGCCTGAAGCGCGTATGCTTGTTG 199
BSNT_02689___ 200 TCACACCATACGACAAAACAGCAATCGGCGATATCGAAAAAGCGATTTTA 249
|||||||.||.||||||||.||||||||||||||.||||||||||||||.
RBAM_016360__ 200 TCACACCGTATGACAAAACGGCAATCGGCGATATTGAAAAAGCGATTTTG 249
BSNT_02689___ 250 AAAGCTGATTTAGGTCTTACACCAACAAGTGACGGCAATATGATTCGAAT 299
|||||||||.|.||..|.||.||.|||||||||||||..||.||.||.||
RBAM_016360__ 250 AAAGCTGATCTTGGCGTAACGCCGACAAGTGACGGCACAATTATCCGCAT 299
BSNT_02689___ 300 TGCAATTCCGGCACTAACAGAAGAGAGACGGAAAGAATTAGTGAAAGTTG 349
.||.||.|||||.||.||.|||||.|||||.||||||.|.||.|||||||
RBAM_016360__ 300 CGCGATCCCGGCTCTGACGGAAGAAAGACGTAAAGAACTTGTCAAAGTTG 349
BSNT_02689___ 350 TAAAAAAATACGCTGAAGAAGCAAAAGTAGCTGTTCGTAACGTTCGCCGT 399
|.|||||||||||.||||||||.||||||||.||.|||||.||.||||||
RBAM_016360__ 350 TCAAAAAATACGCGGAAGAAGCGAAAGTAGCAGTCCGTAATGTCCGCCGT 399
BSNT_02689___ 400 GA-TGCTAACGATGATCTCAAAAAACTTGAGAAAAACGGAGACATTACTG 448
|| .|| ||||||||.||||||||||||||||||||||||||||||||.|
RBAM_016360__ 400 GACAGC-AACGATGACCTCAAAAAACTTGAGAAAAACGGAGACATTACAG 448
BSNT_02689___ 449 AGGATGAACTGCGTGCTTCCACTGAAGACGTTCAAAAACTGACAGATGAA 498
|.||.||.||.||||||||||.|||||||||||||||.||||||||||||
RBAM_016360__ 449 AAGACGAGCTTCGTGCTTCCAGTGAAGACGTTCAAAAGCTGACAGATGAA 498
BSNT_02689___ 499 TATGTGTCAAAAATTGACAGTGTCACAAAAGACAAAGAAAAAGAAATCAT 548
||||||||||||||||||||.|||||.||.||||||||||||||||||||
RBAM_016360__ 499 TATGTGTCAAAAATTGACAGCGTCACGAAGGACAAAGAAAAAGAAATCAT 548
BSNT_02689___ 549 GGAAGTTTAA 558
||||||||||
RBAM_016360__ 549 GGAAGTTTAA 558
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