Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02681 and RBAM_016290
See
Amino acid alignment /
Visit
BSNT_02681 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:34
# Commandline: needle
# -asequence dna-align/BSNT_02681.1.9828.seq
# -bsequence dna-align/RBAM_016290___cheC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02681-RBAM_016290___cheC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02681-RBAM_016290___cheC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02681
# 2: RBAM_016290___cheC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 630
# Identity: 238/630 (37.8%)
# Similarity: 238/630 (37.8%)
# Gaps: 330/630 (52.4%)
# Score: 942.0
#
#
#=======================================
BSNT_02681 0 -------------------------------------------------- 0
RBAM_016290__ 1 ATGAGTAAGTTTAAAGCGATCAAAGAAGAGCAGATGGATATTTTGCGGGA 50
BSNT_02681 0 -------------------------------------------------- 0
RBAM_016290__ 51 AGTCGGAAATATCGGGGCGGGTCACTCGGCTTCTGCAATGGCTCAGCTGC 100
BSNT_02681 0 -------------------------------------------------- 0
RBAM_016290__ 101 TGAACAGAAAGATAGACATGGAAGTGCCGTTTGCGACTTTATTGACATTT 150
BSNT_02681 0 -------------------------------------------------- 0
RBAM_016290__ 151 GATGAGCTCGCTGATTTTTTCGGCGGGGCTGAAACGCCGGTCGCCAGTAT 200
BSNT_02681 0 -------------------------------------------------- 0
RBAM_016290__ 201 CTTTTTAAGAATGGAAGGCGACATGACCGGCTCTATCTTTCTCATCATGC 250
BSNT_02681 0 -------------------------------------------------- 0
RBAM_016290__ 251 CTTTTGATCAAGCGGAACAGTTTATCAGAGAGCTGATCGGAAATCCGGAT 300
BSNT_02681 1 ------------------------------ATGAGCTCATCCGCTTTGCA 20
.||||.||.||.|||||.||
RBAM_016290__ 301 TTTGATATTGACCAGTTGGGCGAAGATCATTTGAGTTCTTCTGCTTTACA 350
BSNT_02681 21 TGAACTGGGCAATATTTTAGCGGGGTCATATTTAACAGCTTTGGCGGATT 70
|||..|.||||||||||||||.||.||.||||||||.||.|||||.||||
RBAM_016290__ 351 TGAGTTCGGCAATATTTTAGCAGGTTCCTATTTAACGGCATTGGCTGATT 400
BSNT_02681 71 TGACGAAACTCCAGCTCTATCCAAGTGTTCCTGAAGTCTCTTTGGACATG 120
||||.||.||..||.|.||.||.||.||.||.|||.||||..|.||.|||
RBAM_016290__ 401 TGACAAAGCTTGAGATTTACCCGAGCGTGCCGGAAATCTCACTTGATATG 450
BSNT_02681 121 TTCGGAGCAGTGATCAGCGAAGGGCTGATGGAGCTCAGTCAGGTTGGAGA 170
|||||.||.||.|||||.||||||||||||||||||||.||.||.|||||
RBAM_016290__ 451 TTCGGCGCGGTTATCAGTGAAGGGCTGATGGAGCTCAGCCAAGTCGGAGA 500
BSNT_02681 171 ACACGCCATTGTTGTCGACACGTCAATTTTTGACCAAAGCCATCAGCAGG 220
.||.||||||||.||.||.||.||.|||||||||||..||...|.|||||
RBAM_016290__ 501 GCATGCCATTGTCGTGGATACTTCTATTTTTGACCAGGGCAGCCGGCAGG 550
BSNT_02681 221 AGCTGAAAGCGCATATGTTTATGCTGCCGGACTATGATTCATTTGAAAAG 270
||||.|||||.||.|||||||||||.||||||||||||||.|||||||||
RBAM_016290__ 551 AGCTCAAAGCCCACATGTTTATGCTCCCGGACTATGATTCTTTTGAAAAG 600
BSNT_02681 271 CTCTTTGTCGCCTTAGGTGCATCATTATGA 300
|||||.|||.|.||.|||||..|.||||||
RBAM_016290__ 601 CTCTTCGTCTCATTGGGTGCGGCTTTATGA 630
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.