Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02677 and RBAM_016270
See
Amino acid alignment /
Visit
BSNT_02677 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:34
# Commandline: needle
# -asequence dna-align/BSNT_02677___cheA.1.9828.seq
# -bsequence dna-align/RBAM_016270___cheA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02677___cheA-RBAM_016270___cheA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02677___cheA-RBAM_016270___cheA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02677___cheA
# 2: RBAM_016270___cheA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2058
# Identity: 1561/2058 (75.9%)
# Similarity: 1561/2058 (75.9%)
# Gaps: 84/2058 ( 4.1%)
# Score: 5953.0
#
#
#=======================================
BSNT_02677___ 1 ATGGATATGAATCAGTATTTAGATGTCTTTATTGATGAGAGTAAAGAACA 50
||||||||.|||||||||||||||||||||||.||||||||.||
RBAM_016270__ 1 ------ATGAATCAATATTTAGATGTCTTTATTGATGAAAGTAAAGAGCA 44
BSNT_02677___ 51 TTTACAAACATGTAATGAAAAGCTTCTTCTTTTAGAGAAAGACCCGACTG 100
.|||||.||||||||.||||||||.||.||.||.||.|||||.|||.|.|
RBAM_016270__ 45 CTTACAGACATGTAACGAAAAGCTGCTGCTGTTGGAAAAAGATCCGGCAG 94
BSNT_02677___ 101 ATCTTCAGCTCGTACATGATATATTCAGGGCTGCCCATACATTAAAAGGA 150
||||||||||.||.|||||.||.|||||.|||||||||||..|.|||||.
RBAM_016270__ 95 ATCTTCAGCTTGTGCATGACATCTTCAGAGCTGCCCATACGCTGAAAGGC 144
BSNT_02677___ 151 ATGAGCGCAACGATGGGCTACACGGATTTAGCACACCTAACCCATCTGCT 200
|||||||||||||||||.||.||.|||.|.||.||..|||||||||||.|
RBAM_016270__ 145 ATGAGCGCAACGATGGGATATACAGATCTGGCGCATTTAACCCATCTGAT 194
BSNT_02677___ 201 TGAAAACGTGCTGGATGCATTCCGAAACGGAGACATGGCAGTCACCTCAG 250
.|||||.||||||||.||..||||.||||||||.|||.|.||.||.||||
RBAM_016270__ 195 GGAAAATGTGCTGGACGCTATCCGCAACGGAGAAATGCCGGTTACATCAG 244
BSNT_02677___ 251 ACTGGCTGGATATTTTGTTTGAAGCTCTGGATCACCTGGAAGCAATGGTT 300
|.|||||||||.|..||||||||||.||.|||||.||.||||..|||||.
RBAM_016270__ 245 ATTGGCTGGATGTGCTGTTTGAAGCGCTTGATCATCTAGAAGAGATGGTG 294
BSNT_02677___ 301 CAGTCTATTATTGATGGCGGGGATGGTAAAAGAGATATCTCAGAAGTGAG 350
|||||.||||||||.||.||.||.||.|||.|.|||||.||.||||||||
RBAM_016270__ 295 CAGTCCATTATTGACGGAGGAGACGGCAAACGTGATATTTCTGAAGTGAG 344
BSNT_02677___ 351 TGCCAAGCTTGATGTGAATGGTGCGCACGCTGAATCCGCTGCCTCCGCGG 400
|||.|||||.||.||.||||..|.||| |||..|.||.||.||.||.|
RBAM_016270__ 345 TGCGAAGCTCGACGTAAATGCGGTGCA---TGAGACTGCGGCTTCAGCCG 391
BSNT_02677___ 401 AACTTGCAGAAGCACAGAGTTCAG------------CATCTGATTGGGAA 438
||...||||||.|.|.|..||||| ||.||||.|||.|.
RBAM_016270__ 392 AAACAGCAGAACCGCCGGCTTCAGAACAACAGGCTTCAACTGAATGGAAT 441
BSNT_02677___ 439 TATGATGAATTTGAACGTACAGTTATACAAGAAGCGGAGGAGCAAGGCTT 488
|||||.||.||.|||||.||.|||||..||||.|||||.||||||||.||
RBAM_016270__ 442 TATGACGAGTTCGAACGGACTGTTATTGAAGAGGCGGAAGAGCAAGGATT 491
BSNT_02677___ 489 CAAACGATATGAAATCAAGATTTCTCTGAACGAAAACTGTATGTTAAAAG 538
||..||.||||||||.|.|.||||.|||||.||||.|||.|||.|.||||
RBAM_016270__ 492 CAGCCGCTATGAAATAACGGTTTCCCTGAATGAAAGCTGCATGCTCAAAG 541
BSNT_02677___ 539 CAGTTCGTGTCTATATGGTGTTTGAAAAACTAAATGAAGTCGGAGAAGTA 588
|.||.||.||.||.|||.|.||||||||.||.|||||||.|||.|||||.
RBAM_016270__ 542 CCGTGCGCGTGTACATGATATTTGAAAAGCTGAATGAAGCCGGGGAAGTC 591
BSNT_02677___ 589 GCCAAAACAATTCCAAGTGCTGAAGTGCTTGAAACGGAAGATTTTGGAAC 638
||.|||||.||.||....||.|||||||||||.|||||||||||.|||||
RBAM_016270__ 592 GCAAAAACGATACCCGCCGCGGAAGTGCTTGAGACGGAAGATTTCGGAAC 641
BSNT_02677___ 639 TGATTTTCAAGTTTGTTTCTTAACACATCAATCAGCGGAAGACATTGAAC 688
.||||||||.||.||||||||.|||.|.||..|.||.|.|||.|||.||.
RBAM_016270__ 642 GGATTTTCAGGTGTGTTTCTTGACAAAGCAGCCTGCTGGAGAAATTAAAG 691
BSNT_02677___ 689 AATTAATCAATGGCGTGTCGGAAATTGAGCATGTTGAAGTCATTC--AAG 736
||.|.||||..|||.|.||.|||.|.|||.||||.|||.| ||| ..|
RBAM_016270__ 692 AACTCATCAGCGGCATTTCAGAAGTAGAGAATGTCGAAAT--TTCTGCCG 739
BSNT_02677___ 737 GGGCTCCTTTAACATCAGCCGAAAAGCCTGAAGAATCTAAGCAAGAAGAT 786
|.||.||.||||.|.|.||||||||.|| |||
RBAM_016270__ 740 GTGCGCCGTTAAAAACGGCCGAAAAACC------------GCA------- 770
BSNT_02677___ 787 TCACCAGCAGCAGCTGTACCTGCGAAG------CAGGAGAAACAA----- 825
|||.||||.|||.|.|||| |.||..||| ||
RBAM_016270__ 771 --------AGCGGCTGAACCGGTGAAGGAAGCTCCGGTTAAA-AAGACTG 811
BSNT_02677___ 826 --AAACAGCCT---------GCTAAAAACGATGAGCAGGCGAAGCATTCA 864
||||||||| ||.||||..||.||.|||.||||||| |||
RBAM_016270__ 812 AGAAACAGCCTAAGCCGCAAGCGAAAACGGAAGAACAGCCGAAGCA-TCA 860
BSNT_02677___ 865 GCCGGCGGATCTAAAACAATTCGTGTCAACATTGACAGGCTTGATTCTTT 914
|.||||.||.|||||.|||||.|||||||||||.||.||.|||||||.
RBAM_016270__ 861 --CAGCGGCTCGAAAACGATTCGCGTCAACATTGAAAGACTGGATTCTTC 908
BSNT_02677___ 915 AATGAACTTATTTGAAGAGCTTGTCATTGACCGCGGGCGTCTCGAGCAGA 964
|||||||.|.||||||||.|||||||||||||||||||||||.|||||||
RBAM_016270__ 909 AATGAACCTTTTTGAAGAACTTGTCATTGACCGCGGGCGTCTTGAGCAGA 958
BSNT_02677___ 965 TTGCGAAAGAGCTTGAGCACAATGAACTGACTGAAACGGTTGAACGAATG 1014
|.||.|||||||||||.||||||||.|||||||||||.||||||||..||
RBAM_016270__ 959 TCGCCAAAGAGCTTGACCACAATGAGCTGACTGAAACCGTTGAACGCCTG 1008
BSNT_02677___ 1015 ACGAGAATTTCCGGAGATTTGCAATCGATTATTCTGAATATGAGAATGGT 1064
||.|||||.||.||.||..|.||.||.||||||||.||||||.|.|||||
RBAM_016270__ 1009 ACCAGAATCTCGGGCGACCTTCAGTCTATTATTCTTAATATGCGGATGGT 1058
BSNT_02677___ 1065 CCCGGTTGAAACTGTTTTTAACAGATTCCCGAGAATGATTCGCCAGCTTC 1114
.|||||.|||||.||.||||||.|.||||||||||||||.||||||||||
RBAM_016270__ 1059 GCCGGTAGAAACCGTCTTTAACCGTTTCCCGAGAATGATCCGCCAGCTTC 1108
BSNT_02677___ 1115 AGAAAGAGCTGAATAAAAAAATTGAACTCTCGATCATCGGTGCGGAAACT 1164
|.||.||..|.||.||.|||||.|||.|.||.||||||||.||.|||||.
RBAM_016270__ 1109 AAAAGGAATTAAACAAGAAAATCGAATTGTCCATCATCGGAGCTGAAACG 1158
BSNT_02677___ 1165 GAACTGGATCGTACAGTAATTGATGAAATCGGAGATCCACTCGTTCACTT 1214
||.|||||.||.||.||.||||||||||||||.|||||.||.||.||.||
RBAM_016270__ 1159 GAGCTGGACCGCACGGTGATTGATGAAATCGGCGATCCGCTTGTCCATTT 1208
BSNT_02677___ 1215 GATCAGAAACAGTATTGACCATGGTATCGAGGCGCCGGAAACACGTTTGC 1264
.|||||||||||.||.||.||.||.||.||..||||.|||...||..||.
RBAM_016270__ 1209 AATCAGAAACAGCATCGATCACGGCATTGAATCGCCTGAAGTGCGGGTGA 1258
BSNT_02677___ 1265 AAAAGGGAAAACCGGAATCAGGAAAAGTTGTGCTTAAAGCTTATCACAGC 1314
|.||.|||||||||||||||||..|.||.||||||||.||.|||||||||
RBAM_016270__ 1259 ATAAAGGAAAACCGGAATCAGGTCATGTCGTGCTTAAGGCATATCACAGC 1308
BSNT_02677___ 1315 GGCAACCATGTCTTTATCGAAGTAGAGGATGACGGCGCAGGCCTTAATCG 1364
||||||||.||||||||.||.||.||.||||||||.||.|||||.||..|
RBAM_016270__ 1309 GGCAACCACGTCTTTATTGAGGTTGAAGATGACGGGGCCGGCCTGAACAG 1358
BSNT_02677___ 1365 CAAAAAAATTCTGGAAAAAGCGCTTGAGCGCGGGGTCATAACGGAAAAAG 1414
.||.||||||||.|||||||||||.|||||..|.||.||.||.|||...|
RBAM_016270__ 1359 AAAGAAAATTCTTGAAAAAGCGCTCGAGCGGAGTGTAATCACCGAACGTG 1408
BSNT_02677___ 1415 AAGCTGAAAC-CTTAGAAGACAACCAAATTTACGAATTGATTTTTGCTCC 1463
|.|||||||| ||| |||||.||..|.||||||||..|.|||||||||||
RBAM_016270__ 1409 ATGCTGAAACGCTT-GAAGATAATGAGATTTACGAGCTTATTTTTGCTCC 1457
BSNT_02677___ 1464 GGGGTTCTCAACTGCTGACCAAATTTCTGATATTTCCGGCCGCGGTGTAG 1513
|||.|||||.|||||.||.|||||||||||.|||||.||.||.||.||.|
RBAM_016270__ 1458 GGGCTTCTCGACTGCCGATCAAATTTCTGACATTTCAGGGCGGGGCGTCG 1507
BSNT_02677___ 1514 GACTTGACGTTGTAAAAAACAAACTGGAGTCTCTTGGCGGTTCAGTCAGT 1563
|.||.||.||.||||||||.|||||.||.||.||.|||||.||.||||||
RBAM_016270__ 1508 GCCTGGATGTCGTAAAAAATAAACTCGAATCACTCGGCGGCTCTGTCAGT 1557
BSNT_02677___ 1564 GTGAAATCAGCCGAGGGTCAAGGCTCTCTATTCAGCATCCAGCTGCCGCT 1613
||.|||||.||.||.||||||||.|||||.|||||.||||||||.|||||
RBAM_016270__ 1558 GTCAAATCCGCGGAAGGTCAAGGTTCTCTTTTCAGTATCCAGCTTCCGCT 1607
BSNT_02677___ 1614 TAC-CTTGTCTATTATTTCAGTTCTGCTGATTAAGTTGGAAGAAGAGATA 1662
.|| ||| ||.|||||.||.|||||.||.|||||..||||||||||||..
RBAM_016270__ 1608 GACACTT-TCAATTATATCCGTTCTTCTCATTAAACTGGAAGAAGAGACG 1656
BSNT_02677___ 1663 TTTGCCATTCCGATTTCTTCAATCATTGAGACAGCAGTTATTGACAGAAA 1712
|||||.||.|||||||||||.||.||.|||||.||.||||||||.|..||
RBAM_016270__ 1657 TTTGCGATACCGATTTCTTCTATTATAGAGACGGCTGTTATTGATAAGAA 1706
BSNT_02677___ 1713 AGACATTTTGCAAACGCATGACCGTGAAGTGATTGACTTTAGAGGGCATA 1762
|||.||..||||.|||||||||.|.|||||||||||.||.|||||.||.|
RBAM_016270__ 1707 AGATATCCTGCAGACGCATGACAGAGAAGTGATTGATTTCAGAGGCCAAA 1756
BSNT_02677___ 1763 TTGTCCCTGTCGTTTATTTAAAAGAAGAGTTTAAAATAGAAGATACAAGA 1812
|.||.||..||||.|||||.|||.||||.||....||....|||.|||.|
RBAM_016270__ 1757 TCGTTCCGATCGTCTATTTGAAAAAAGAATTCGGCATTACGGATTCAAAA 1806
BSNT_02677___ 1813 AAAGATGCGGAACAGCTCCATATCATTGTCGTGAAAAAAGGCGACAAACC 1862
.|.|||||.||.|||.|||||.|.||.|||||||||||.|||||.|||.|
RBAM_016270__ 1807 CAGGATGCCGATCAGTTCCATGTAATCGTCGTGAAAAAGGGCGATAAATC 1856
BSNT_02677___ 1863 TACTGCATTTGTGGTGGACTCCTTTATTGGCCAGCAGGAAGTTGTGCTGA 1912
.|||||.|||||.||||||||.|||||.||.|||||||||||.||.||||
RBAM_016270__ 1857 CACTGCTTTTGTCGTGGACTCTTTTATCGGACAGCAGGAAGTCGTACTGA 1906
BSNT_02677___ 1913 AATCACTCGGAGATTATTTAACAAACGTCTTTGCAATTTCCGGAGCTACT 1962
||||||||||.||.|||||.||.|||||||||||.||||||||.|||||.
RBAM_016270__ 1907 AATCACTCGGCGACTATTTGACGAACGTCTTTGCGATTTCCGGCGCTACG 1956
BSNT_02677___ 1963 ATTTTAGGAGACGGAGAAGTAGCGCTCATTATTGATTGTAATGCACTGAT 2012
|||.|.|||.|.||||||||.|||||.|||||||||||.|||||.|||||
RBAM_016270__ 1957 ATTCTCGGAAATGGAGAAGTGGCGCTGATTATTGATTGCAATGCGCTGAT 2006
BSNT_02677___ 2013 -TATTTAA 2019
||.|.|
RBAM_016270__ 2007 CTACTAA- 2013
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.