Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02672 and RBAM_016230
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:34
# Commandline: needle
# -asequence dna-align/BSNT_02672___flhA.1.9828.seq
# -bsequence dna-align/RBAM_016230___flhA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02672___flhA-RBAM_016230___flhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02672___flhA-RBAM_016230___flhA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02672___flhA
# 2: RBAM_016230___flhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2045
# Identity: 1642/2045 (80.3%)
# Similarity: 1642/2045 (80.3%)
# Gaps: 22/2045 ( 1.1%)
# Score: 6561.0
#
#
#=======================================
BSNT_02672___ 1 ATGTCAACAAGAGATTTATCCGTTTTAATAAGTGTTGTCCTCATTGTGGC 50
||||||||||||||||||||.|||||||||||||||||||||||||||||
RBAM_016230__ 1 ATGTCAACAAGAGATTTATCGGTTTTAATAAGTGTTGTCCTCATTGTGGC 50
BSNT_02672___ 51 GATGCTGGTGATTCCATTTCCTCCATGGCTGTTAAGTATTTTGATCATTA 100
.|||||||||||||||||.|||||||||.|||||||||||||||||||.|
RBAM_016230__ 51 AATGCTGGTGATTCCATTCCCTCCATGGTTGTTAAGTATTTTGATCATCA 100
BSNT_02672___ 101 TTAATATTTCTCTTGCGTTGATCGTGCTTCTCACCACAATGAATATGCAG 150
|||||||.|||||||||||||||||||||||||||||||||||||||||.
RBAM_016230__ 101 TTAATATCTCTCTTGCGTTGATCGTGCTTCTCACCACAATGAATATGCAA 150
BSNT_02672___ 151 GAAGCGCTTCAGTTTTCGATTTTTCCGTCACTGTTGCTGCTTTTGACCCT 200
|||.||||.||.||.|||||.||.||||||.||.|||||.|.|||||.||
RBAM_016230__ 151 GAACCGCTGCAATTCTCGATATTCCCGTCATTGCTGCTGTTATTGACGCT 200
BSNT_02672___ 201 ATTTCG--TTTGGGCTTGAACGTCTCAACTACCCGTTCAATTCTTTCACA 248
.||||| |||.| .|.||.||.||.||.||.|||||.||||||||.|.
RBAM_016230__ 201 GTTTCGGCTTTCG--CTCAATGTGTCGACGACACGTTCGATTCTTTCTCG 248
BSNT_02672___ 249 CGGTGAAGGAGGGAAA-GTCGTCGAGACTTTCGGAAATTTCGTTGTCGGC 297
|||.||||| |||||| ||.||.|||||.|||||.|||||||||||||||
RBAM_016230__ 249 CGGAGAAGG-GGGAAAGGTTGTTGAGACATTCGGGAATTTCGTTGTCGGC 297
BSNT_02672___ 298 GGAAATGTATTAGTTGGACTCGTTGTATTTATCATCCTTATTATTATTCA 347
||||||||..|.||.||.||.|||||.||.||.|||.|.|||||||||||
RBAM_016230__ 298 GGAAATGTGCTGGTAGGGCTTGTTGTCTTCATTATCTTGATTATTATTCA 347
BSNT_02672___ 348 GTTTATCGTCATTACAAAAGGTGCTGAACGTGTTTCCGAGGTTGCAGCAA 397
|||||||||||||||||||||.||.||.||.||.||.||.||.||.||.|
RBAM_016230__ 348 GTTTATCGTCATTACAAAAGGCGCCGAGCGGGTATCGGAAGTGGCGGCGA 397
BSNT_02672___ 398 GGTTTACGCTGGACGCAATGCCGGGGAAGCAGATGAGTATTGATGCTGAT 447
|.||||||||.||.||.|||||.||.|||||.|||||||||||.||.|||
RBAM_016230__ 398 GATTTACGCTCGATGCGATGCCCGGAAAGCAAATGAGTATTGACGCGGAT 447
BSNT_02672___ 448 TTAAACGCAGGGATGATTACCGAACAGGAAGCGAAGCATCGCCGCGAAAA 497
|||||.||.||.||||||||.||.|||||.||.|||||..|.||.|||||
RBAM_016230__ 448 TTAAATGCCGGCATGATTACGGAGCAGGATGCAAAGCACAGACGTGAAAA 497
BSNT_02672___ 498 AGTGGCAAGAGAAGCAGACTTTTATGGAGCAATGGACGGTGCCAGTAAAT 547
|||.||..|.|||||.||.|||||.||.||.|||||||||||.||.||||
RBAM_016230__ 498 AGTCGCCCGGGAAGCGGATTTTTACGGCGCCATGGACGGTGCGAGCAAAT 547
BSNT_02672___ 548 TTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATT 597
|.||.|||||.||.|||||.||.||.||||||||.|||||||||||||||
RBAM_016230__ 548 TCGTCAAAGGGGATGCCATCGCGGGTATCATCATCGTGATGATCAATATT 597
BSNT_02672___ 598 ATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGA 647
||||||||||||||.|||||.|||||.||||||||.|||..|||.|||||
RBAM_016230__ 598 ATTTTCGGAATCGTAATCGGCATGCTGCAGCAGGGGATGAGCATACAAGA 647
BSNT_02672___ 648 GGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGC 697
.|||||.||.||||||||.||||||||.||.||.||.||.||.|||||.|
RBAM_016230__ 648 AGCTGCGTCTCACTTTACAATGCTGACGGTCGGTGACGGTATCGTTTCTC 697
BSNT_02672___ 698 AAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGA 747
||||.|||||..||.|.|||||.||||||||.||.|||||.||.||.|||
RBAM_016230__ 698 AAATGCCGGCCTTGCTCATTTCAACGGCTACAGGGATTGTCGTGACGAGA 747
BSNT_02672___ 748 GCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGC 797
||.|||||||||||||||.|.||.|||||.||||||||||||||||||||
RBAM_016230__ 748 GCGGCATCTGAAGGAAACCTCGGTCATGATATTACAGGCCAGCTGTTTGC 797
BSNT_02672___ 798 GTATCCAAAGCTTTTATACGTCGCAGCAGCTACGATCATG--CTTT---T 842
.|||||.|||||.||.||.||.||.||.|..|| || |||| |
RBAM_016230__ 798 TTATCCGAAGCTCTTGTATGTAGCTGCGGGAAC-----TGTACTTTTGCT 842
BSNT_02672___ 843 AGGTATTTTCACTCCGATCGGCATCCTTCTGACGGGGCCGCTTGCGGGAT 892
.|||.||.|.||.|||||||||||.||.||||||||||||.|.||.||..
RBAM_016230__ 843 CGGTCTTCTTACACCGATCGGCATTCTGCTGACGGGGCCGATCGCCGGTC 892
BSNT_02672___ 893 TGCTTGCTTTTGGCGCATATACACTATCTATATCAGGTAAGGAAAAAGAA 942
|||||||.||.|||||.||.|..||.||.|.|.|.|.||||...|..|||
RBAM_016230__ 893 TGCTTGCATTCGGCGCTTACATGCTGTCCAAAGCGGATAAGCCGAGCGAA 942
BSNT_02672___ 943 GAAGTGGATGAGATTCTTGAGGAAGAGGCTGAGGTGGACGAGCTTAAAAG 992
||||.|||.||.||||||||.|||||||||.|||.|||.||.||.|||||
RBAM_016230__ 943 GAAGAGGAAGAAATTCTTGAAGAAGAGGCTCAGGCGGATGAACTGAAAAG 992
BSNT_02672___ 993 CCCTGAAAGTGTCGTTCAGCTTCTGCATATAGATCCGATAGAATTTGAGT 1042
|||.|||||.||.||.||||||.|.|||||.||||||||.||||||||||
RBAM_016230__ 993 CCCGGAAAGCGTTGTGCAGCTTTTACATATTGATCCGATTGAATTTGAGT 1042
BSNT_02672___ 1043 TTGGATATGGCCTGATACCGCTTGCTGATGCCAATCAAGGCGGTGAT-TT 1091
|.|||||.||.||..|.||||||||.||.||....||.||||||||| ||
RBAM_016230__ 1043 TCGGATACGGACTCGTGCCGCTTGCAGACGCGGGGCAGGGCGGTGATCTT 1092
BSNT_02672___ 1092 ATTAGACCGAATTGTTATGATACGCCGTCAG-TTG-GCTTTGGAACTCGG 1139
.|| |||||.||.||.|||||..|.|||||| ||| |||| |||.|.||
RBAM_016230__ 1093 CTT-GACCGCATCGTCATGATCAGACGTCAGCTTGCGCTT--GAATTGGG 1139
BSNT_02672___ 1140 GCTTGTCATTCCTGTCGTGCGAATCAGAGATAATATAGCGTTGCAGCCTA 1189
.|||||||||||.||.|||||.|||||||||||.||.|||.|.|||||.|
RBAM_016230__ 1140 ACTTGTCATTCCGGTTGTGCGCATCAGAGATAACATCGCGCTCCAGCCGA 1189
BSNT_02672___ 1190 ATGAATACCGATTGAAAATTAAAGGAAACGAAGTAGCAAAAGGCGAGCTG 1239
||||||||.||||||||||||||||.||.|||||.||.|||||.|||||.
RBAM_016230__ 1190 ATGAATACAGATTGAAAATTAAAGGCAATGAAGTCGCTAAAGGAGAGCTC 1239
BSNT_02672___ 1240 TTGCTTGATCATTATTTAGCGATGTCGCCTACTCCTGAGGACGATCTCAT 1289
.||||.||||||||.|||||||||||.||.||.|||||.||.||..||||
RBAM_016230__ 1240 CTGCTAGATCATTACTTAGCGATGTCACCGACGCCTGAAGATGACGTCAT 1289
BSNT_02672___ 1290 TGAAGGGATTGAAACAGTGGAGCCTTCATTCGGTCTGCCGGCTAAATGGA 1339
||||||.||||||||..|.|||||.||.|||||.||.||.||.|||||||
RBAM_016230__ 1290 TGAAGGAATTGAAACGATAGAGCCGTCGTTCGGACTTCCCGCAAAATGGA 1339
BSNT_02672___ 1340 TTAGCGAAGCGGTAAAGGATGAAGCCGACATGCTTGGTTATACAGTAGTT 1389
|.||||||||.|.|||.||||||||.||||||||.||.||||||||.|||
RBAM_016230__ 1340 TCAGCGAAGCTGCAAAAGATGAAGCGGACATGCTGGGATATACAGTTGTT 1389
BSNT_02672___ 1390 GATCCTGCATCAGTCGTTTCAACGCATATTACGGAGAAAATTAAGCAGCA 1439
|||||.|||||||||||.||.|||||||||||.||.||||||||||||||
RBAM_016230__ 1390 GATCCGGCATCAGTCGTATCTACGCATATTACAGAAAAAATTAAGCAGCA 1439
BSNT_02672___ 1440 TGCCCACGAATTGATCGGAAGGCAGGAGACAAAACAGCTGATCGATCACT 1489
||||||.|||.||.||||.||.|||||.|||||.||||||||||||||..
RBAM_016230__ 1440 TGCCCATGAACTGGTCGGCAGACAGGAAACAAAGCAGCTGATCGATCATC 1489
BSNT_02672___ 1490 TGAAAGAATCGTATCCAGTCCTGGTTGAAGAGGTTACGCCGAATCCATTG 1539
||||.|||...|||||.||.||.|||||.||.||.|||||.||.||..|.
RBAM_016230__ 1490 TGAAGGAAAATTATCCTGTGCTTGTTGAGGAAGTCACGCCAAACCCTCTT 1539
BSNT_02672___ 1540 TCTGTCGGTGATATTCAGAAAGTGCTTGCTAAGCTTTTAAAAGAAAAAGT 1589
||||||||.||||||||.||.||||||||.||..|..|.|.|||||||||
RBAM_016230__ 1540 TCTGTCGGCGATATTCAAAAGGTGCTTGCCAAATTGCTGAGAGAAAAAGT 1589
BSNT_02672___ 1590 TTCAATTCGAAACTTAGTAACGATTTTTGAAACGCTTGCTGACTATGGGA 1639
||||||..|||||||.||.||.|||||||||||.|||||.||.||.||.|
RBAM_016230__ 1590 TTCAATCAGAAACTTGGTGACCATTTTTGAAACTCTTGCCGATTACGGAA 1639
BSNT_02672___ 1640 AATTAACAACAGATTCTGATCTTTTGACAGAGTATACAAGACAAGCGCTT 1689
.||||||.||||||||.||.|||||||||||.||..|.|||||..|||||
RBAM_016230__ 1640 GATTAACGACAGATTCAGACCTTTTGACAGAATACGCGAGACAGTCGCTT 1689
BSNT_02672___ 1690 GCTAAACAAATTACAGCACAGTTTGCCAAAGAAAATGAAGTGTTGAAGGT 1739
||.||||||||.||.|||||.|.|||.|.|||..|||||..|.|||||||
RBAM_016230__ 1690 GCCAAACAAATCACGGCACAATATGCGAGAGAGCATGAAACGCTGAAGGT 1739
BSNT_02672___ 1740 TGTTACTTGTTCGGGCCGTGTAGAAAAGGCAATAGCAGACGGTGTGCAGC 1789
..|.||.||.||.|||||.||.|||||.||.||.||||||||.||.||||
RBAM_016230__ 1740 CATCACATGCTCAGGCCGGGTGGAAAAAGCGATTGCAGACGGGGTACAGC 1789
BSNT_02672___ 1790 AGACGGAACACGGGAACTATTTATCACTTGAACCAGATATTTCAGAAAGT 1839
||||.|||||.||.||.||..|.|||||.||.||.||..|||||||.||.
RBAM_016230__ 1790 AGACTGAACAGGGCAATTACCTGTCACTCGACCCTGAGGTTTCAGACAGC 1839
BSNT_02672___ 1840 ATAGTGCGCTCTGTCGCTAAAGAAGCTGAACAGCTCTCATTACGTCAGGA 1889
||..|.||.||||||||||||||.||.||.|||||.||..|.||.|||||
RBAM_016230__ 1840 ATCATCCGTTCTGTCGCTAAAGAGGCCGAGCAGCTTTCCATCCGCCAGGA 1889
BSNT_02672___ 1890 AACCGCGATTCTTCTTTGCTCGCCGCCTGTCAGAATGTATGTGAAGCAGC 1939
..|.||||||||||||||||||||..||||||||||||||||.||.||||
RBAM_016230__ 1890 GTCGGCGATTCTTCTTTGCTCGCCTGCTGTCAGAATGTATGTAAAACAGC 1939
BSNT_02672___ 1940 TTCTGGAACGGTACTTCCCTGATCTTCCGGTACTCTCTTATAACGAACTT 1989
|..|.||||||||.|||||||||||||||||.||.||||||||.||.||.
RBAM_016230__ 1940 TGTTAGAACGGTATTTCCCTGATCTTCCGGTTCTTTCTTATAATGAGCTG 1989
BSNT_02672___ 1990 GAGGCGAATGTTGAGGTACAAAGCATTGGAGTGGTGGATATTTAA 2034
||.||.||||||||.|||||.||||||||||||||||||||||||
RBAM_016230__ 1990 GAAGCAAATGTTGAAGTACAGAGCATTGGAGTGGTGGATATTTAA 2034
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