Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02672 and RBAM_016230

See Amino acid alignment / Visit BSNT_02672 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:34
# Commandline: needle
#    -asequence dna-align/BSNT_02672___flhA.1.9828.seq
#    -bsequence dna-align/RBAM_016230___flhA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02672___flhA-RBAM_016230___flhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02672___flhA-RBAM_016230___flhA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02672___flhA
# 2: RBAM_016230___flhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2045
# Identity:    1642/2045 (80.3%)
# Similarity:  1642/2045 (80.3%)
# Gaps:          22/2045 ( 1.1%)
# Score: 6561.0
# 
#
#=======================================

BSNT_02672___      1 ATGTCAACAAGAGATTTATCCGTTTTAATAAGTGTTGTCCTCATTGTGGC     50
                     ||||||||||||||||||||.|||||||||||||||||||||||||||||
RBAM_016230__      1 ATGTCAACAAGAGATTTATCGGTTTTAATAAGTGTTGTCCTCATTGTGGC     50

BSNT_02672___     51 GATGCTGGTGATTCCATTTCCTCCATGGCTGTTAAGTATTTTGATCATTA    100
                     .|||||||||||||||||.|||||||||.|||||||||||||||||||.|
RBAM_016230__     51 AATGCTGGTGATTCCATTCCCTCCATGGTTGTTAAGTATTTTGATCATCA    100

BSNT_02672___    101 TTAATATTTCTCTTGCGTTGATCGTGCTTCTCACCACAATGAATATGCAG    150
                     |||||||.|||||||||||||||||||||||||||||||||||||||||.
RBAM_016230__    101 TTAATATCTCTCTTGCGTTGATCGTGCTTCTCACCACAATGAATATGCAA    150

BSNT_02672___    151 GAAGCGCTTCAGTTTTCGATTTTTCCGTCACTGTTGCTGCTTTTGACCCT    200
                     |||.||||.||.||.|||||.||.||||||.||.|||||.|.|||||.||
RBAM_016230__    151 GAACCGCTGCAATTCTCGATATTCCCGTCATTGCTGCTGTTATTGACGCT    200

BSNT_02672___    201 ATTTCG--TTTGGGCTTGAACGTCTCAACTACCCGTTCAATTCTTTCACA    248
                     .|||||  |||.|  .|.||.||.||.||.||.|||||.||||||||.|.
RBAM_016230__    201 GTTTCGGCTTTCG--CTCAATGTGTCGACGACACGTTCGATTCTTTCTCG    248

BSNT_02672___    249 CGGTGAAGGAGGGAAA-GTCGTCGAGACTTTCGGAAATTTCGTTGTCGGC    297
                     |||.||||| |||||| ||.||.|||||.|||||.|||||||||||||||
RBAM_016230__    249 CGGAGAAGG-GGGAAAGGTTGTTGAGACATTCGGGAATTTCGTTGTCGGC    297

BSNT_02672___    298 GGAAATGTATTAGTTGGACTCGTTGTATTTATCATCCTTATTATTATTCA    347
                     ||||||||..|.||.||.||.|||||.||.||.|||.|.|||||||||||
RBAM_016230__    298 GGAAATGTGCTGGTAGGGCTTGTTGTCTTCATTATCTTGATTATTATTCA    347

BSNT_02672___    348 GTTTATCGTCATTACAAAAGGTGCTGAACGTGTTTCCGAGGTTGCAGCAA    397
                     |||||||||||||||||||||.||.||.||.||.||.||.||.||.||.|
RBAM_016230__    348 GTTTATCGTCATTACAAAAGGCGCCGAGCGGGTATCGGAAGTGGCGGCGA    397

BSNT_02672___    398 GGTTTACGCTGGACGCAATGCCGGGGAAGCAGATGAGTATTGATGCTGAT    447
                     |.||||||||.||.||.|||||.||.|||||.|||||||||||.||.|||
RBAM_016230__    398 GATTTACGCTCGATGCGATGCCCGGAAAGCAAATGAGTATTGACGCGGAT    447

BSNT_02672___    448 TTAAACGCAGGGATGATTACCGAACAGGAAGCGAAGCATCGCCGCGAAAA    497
                     |||||.||.||.||||||||.||.|||||.||.|||||..|.||.|||||
RBAM_016230__    448 TTAAATGCCGGCATGATTACGGAGCAGGATGCAAAGCACAGACGTGAAAA    497

BSNT_02672___    498 AGTGGCAAGAGAAGCAGACTTTTATGGAGCAATGGACGGTGCCAGTAAAT    547
                     |||.||..|.|||||.||.|||||.||.||.|||||||||||.||.||||
RBAM_016230__    498 AGTCGCCCGGGAAGCGGATTTTTACGGCGCCATGGACGGTGCGAGCAAAT    547

BSNT_02672___    548 TTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATCAATATT    597
                     |.||.|||||.||.|||||.||.||.||||||||.|||||||||||||||
RBAM_016230__    548 TCGTCAAAGGGGATGCCATCGCGGGTATCATCATCGTGATGATCAATATT    597

BSNT_02672___    598 ATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCATTCAAGA    647
                     ||||||||||||||.|||||.|||||.||||||||.|||..|||.|||||
RBAM_016230__    598 ATTTTCGGAATCGTAATCGGCATGCTGCAGCAGGGGATGAGCATACAAGA    647

BSNT_02672___    648 GGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTGTTTCGC    697
                     .|||||.||.||||||||.||||||||.||.||.||.||.||.|||||.|
RBAM_016230__    648 AGCTGCGTCTCACTTTACAATGCTGACGGTCGGTGACGGTATCGTTTCTC    697

BSNT_02672___    698 AAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTCACAAGA    747
                     ||||.|||||..||.|.|||||.||||||||.||.|||||.||.||.|||
RBAM_016230__    698 AAATGCCGGCCTTGCTCATTTCAACGGCTACAGGGATTGTCGTGACGAGA    747

BSNT_02672___    748 GCTGCATCTGAAGGAAACTTAGGGCATGACATTACAGGCCAGCTGTTTGC    797
                     ||.|||||||||||||||.|.||.|||||.||||||||||||||||||||
RBAM_016230__    748 GCGGCATCTGAAGGAAACCTCGGTCATGATATTACAGGCCAGCTGTTTGC    797

BSNT_02672___    798 GTATCCAAAGCTTTTATACGTCGCAGCAGCTACGATCATG--CTTT---T    842
                     .|||||.|||||.||.||.||.||.||.|..||     ||  ||||   |
RBAM_016230__    798 TTATCCGAAGCTCTTGTATGTAGCTGCGGGAAC-----TGTACTTTTGCT    842

BSNT_02672___    843 AGGTATTTTCACTCCGATCGGCATCCTTCTGACGGGGCCGCTTGCGGGAT    892
                     .|||.||.|.||.|||||||||||.||.||||||||||||.|.||.||..
RBAM_016230__    843 CGGTCTTCTTACACCGATCGGCATTCTGCTGACGGGGCCGATCGCCGGTC    892

BSNT_02672___    893 TGCTTGCTTTTGGCGCATATACACTATCTATATCAGGTAAGGAAAAAGAA    942
                     |||||||.||.|||||.||.|..||.||.|.|.|.|.||||...|..|||
RBAM_016230__    893 TGCTTGCATTCGGCGCTTACATGCTGTCCAAAGCGGATAAGCCGAGCGAA    942

BSNT_02672___    943 GAAGTGGATGAGATTCTTGAGGAAGAGGCTGAGGTGGACGAGCTTAAAAG    992
                     ||||.|||.||.||||||||.|||||||||.|||.|||.||.||.|||||
RBAM_016230__    943 GAAGAGGAAGAAATTCTTGAAGAAGAGGCTCAGGCGGATGAACTGAAAAG    992

BSNT_02672___    993 CCCTGAAAGTGTCGTTCAGCTTCTGCATATAGATCCGATAGAATTTGAGT   1042
                     |||.|||||.||.||.||||||.|.|||||.||||||||.||||||||||
RBAM_016230__    993 CCCGGAAAGCGTTGTGCAGCTTTTACATATTGATCCGATTGAATTTGAGT   1042

BSNT_02672___   1043 TTGGATATGGCCTGATACCGCTTGCTGATGCCAATCAAGGCGGTGAT-TT   1091
                     |.|||||.||.||..|.||||||||.||.||....||.||||||||| ||
RBAM_016230__   1043 TCGGATACGGACTCGTGCCGCTTGCAGACGCGGGGCAGGGCGGTGATCTT   1092

BSNT_02672___   1092 ATTAGACCGAATTGTTATGATACGCCGTCAG-TTG-GCTTTGGAACTCGG   1139
                     .|| |||||.||.||.|||||..|.|||||| ||| ||||  |||.|.||
RBAM_016230__   1093 CTT-GACCGCATCGTCATGATCAGACGTCAGCTTGCGCTT--GAATTGGG   1139

BSNT_02672___   1140 GCTTGTCATTCCTGTCGTGCGAATCAGAGATAATATAGCGTTGCAGCCTA   1189
                     .|||||||||||.||.|||||.|||||||||||.||.|||.|.|||||.|
RBAM_016230__   1140 ACTTGTCATTCCGGTTGTGCGCATCAGAGATAACATCGCGCTCCAGCCGA   1189

BSNT_02672___   1190 ATGAATACCGATTGAAAATTAAAGGAAACGAAGTAGCAAAAGGCGAGCTG   1239
                     ||||||||.||||||||||||||||.||.|||||.||.|||||.|||||.
RBAM_016230__   1190 ATGAATACAGATTGAAAATTAAAGGCAATGAAGTCGCTAAAGGAGAGCTC   1239

BSNT_02672___   1240 TTGCTTGATCATTATTTAGCGATGTCGCCTACTCCTGAGGACGATCTCAT   1289
                     .||||.||||||||.|||||||||||.||.||.|||||.||.||..||||
RBAM_016230__   1240 CTGCTAGATCATTACTTAGCGATGTCACCGACGCCTGAAGATGACGTCAT   1289

BSNT_02672___   1290 TGAAGGGATTGAAACAGTGGAGCCTTCATTCGGTCTGCCGGCTAAATGGA   1339
                     ||||||.||||||||..|.|||||.||.|||||.||.||.||.|||||||
RBAM_016230__   1290 TGAAGGAATTGAAACGATAGAGCCGTCGTTCGGACTTCCCGCAAAATGGA   1339

BSNT_02672___   1340 TTAGCGAAGCGGTAAAGGATGAAGCCGACATGCTTGGTTATACAGTAGTT   1389
                     |.||||||||.|.|||.||||||||.||||||||.||.||||||||.|||
RBAM_016230__   1340 TCAGCGAAGCTGCAAAAGATGAAGCGGACATGCTGGGATATACAGTTGTT   1389

BSNT_02672___   1390 GATCCTGCATCAGTCGTTTCAACGCATATTACGGAGAAAATTAAGCAGCA   1439
                     |||||.|||||||||||.||.|||||||||||.||.||||||||||||||
RBAM_016230__   1390 GATCCGGCATCAGTCGTATCTACGCATATTACAGAAAAAATTAAGCAGCA   1439

BSNT_02672___   1440 TGCCCACGAATTGATCGGAAGGCAGGAGACAAAACAGCTGATCGATCACT   1489
                     ||||||.|||.||.||||.||.|||||.|||||.||||||||||||||..
RBAM_016230__   1440 TGCCCATGAACTGGTCGGCAGACAGGAAACAAAGCAGCTGATCGATCATC   1489

BSNT_02672___   1490 TGAAAGAATCGTATCCAGTCCTGGTTGAAGAGGTTACGCCGAATCCATTG   1539
                     ||||.|||...|||||.||.||.|||||.||.||.|||||.||.||..|.
RBAM_016230__   1490 TGAAGGAAAATTATCCTGTGCTTGTTGAGGAAGTCACGCCAAACCCTCTT   1539

BSNT_02672___   1540 TCTGTCGGTGATATTCAGAAAGTGCTTGCTAAGCTTTTAAAAGAAAAAGT   1589
                     ||||||||.||||||||.||.||||||||.||..|..|.|.|||||||||
RBAM_016230__   1540 TCTGTCGGCGATATTCAAAAGGTGCTTGCCAAATTGCTGAGAGAAAAAGT   1589

BSNT_02672___   1590 TTCAATTCGAAACTTAGTAACGATTTTTGAAACGCTTGCTGACTATGGGA   1639
                     ||||||..|||||||.||.||.|||||||||||.|||||.||.||.||.|
RBAM_016230__   1590 TTCAATCAGAAACTTGGTGACCATTTTTGAAACTCTTGCCGATTACGGAA   1639

BSNT_02672___   1640 AATTAACAACAGATTCTGATCTTTTGACAGAGTATACAAGACAAGCGCTT   1689
                     .||||||.||||||||.||.|||||||||||.||..|.|||||..|||||
RBAM_016230__   1640 GATTAACGACAGATTCAGACCTTTTGACAGAATACGCGAGACAGTCGCTT   1689

BSNT_02672___   1690 GCTAAACAAATTACAGCACAGTTTGCCAAAGAAAATGAAGTGTTGAAGGT   1739
                     ||.||||||||.||.|||||.|.|||.|.|||..|||||..|.|||||||
RBAM_016230__   1690 GCCAAACAAATCACGGCACAATATGCGAGAGAGCATGAAACGCTGAAGGT   1739

BSNT_02672___   1740 TGTTACTTGTTCGGGCCGTGTAGAAAAGGCAATAGCAGACGGTGTGCAGC   1789
                     ..|.||.||.||.|||||.||.|||||.||.||.||||||||.||.||||
RBAM_016230__   1740 CATCACATGCTCAGGCCGGGTGGAAAAAGCGATTGCAGACGGGGTACAGC   1789

BSNT_02672___   1790 AGACGGAACACGGGAACTATTTATCACTTGAACCAGATATTTCAGAAAGT   1839
                     ||||.|||||.||.||.||..|.|||||.||.||.||..|||||||.||.
RBAM_016230__   1790 AGACTGAACAGGGCAATTACCTGTCACTCGACCCTGAGGTTTCAGACAGC   1839

BSNT_02672___   1840 ATAGTGCGCTCTGTCGCTAAAGAAGCTGAACAGCTCTCATTACGTCAGGA   1889
                     ||..|.||.||||||||||||||.||.||.|||||.||..|.||.|||||
RBAM_016230__   1840 ATCATCCGTTCTGTCGCTAAAGAGGCCGAGCAGCTTTCCATCCGCCAGGA   1889

BSNT_02672___   1890 AACCGCGATTCTTCTTTGCTCGCCGCCTGTCAGAATGTATGTGAAGCAGC   1939
                     ..|.||||||||||||||||||||..||||||||||||||||.||.||||
RBAM_016230__   1890 GTCGGCGATTCTTCTTTGCTCGCCTGCTGTCAGAATGTATGTAAAACAGC   1939

BSNT_02672___   1940 TTCTGGAACGGTACTTCCCTGATCTTCCGGTACTCTCTTATAACGAACTT   1989
                     |..|.||||||||.|||||||||||||||||.||.||||||||.||.||.
RBAM_016230__   1940 TGTTAGAACGGTATTTCCCTGATCTTCCGGTTCTTTCTTATAATGAGCTG   1989

BSNT_02672___   1990 GAGGCGAATGTTGAGGTACAAAGCATTGGAGTGGTGGATATTTAA   2034
                     ||.||.||||||||.|||||.||||||||||||||||||||||||
RBAM_016230__   1990 GAAGCAAATGTTGAAGTACAGAGCATTGGAGTGGTGGATATTTAA   2034


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