Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02666 and RBAM_016190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:33
# Commandline: needle
# -asequence dna-align/BSNT_02666___fliP.1.9828.seq
# -bsequence dna-align/RBAM_016190___fliP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02666___fliP-RBAM_016190___fliP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02666___fliP-RBAM_016190___fliP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02666___fliP
# 2: RBAM_016190___fliP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 671
# Identity: 553/671 (82.4%)
# Similarity: 553/671 (82.4%)
# Gaps: 10/671 ( 1.5%)
# Score: 2271.0
#
#
#=======================================
BSNT_02666___ 1 ATGAATGAGTTTATAAATATTTTCAGTTCAAGCGATCCG---GAAAACGT 47
||||||||.||.||.|||.||||.|.|||||.|..|||| ||| ||
RBAM_016190__ 1 ATGAATGAATTCATTAATCTTTTTAATTCAAACAGTCCGACCGAA---GT 47
BSNT_02666___ 48 AAGTTCGACTGTTAAATTACTATTATTGTTAACTGTATTTTCAGTGGCGC 97
.||.||.||||||||||||||..|..|.||.|||||.|||||||||||||
RBAM_016190__ 48 CAGCTCCACTGTTAAATTACTGCTGCTTTTGACTGTCTTTTCAGTGGCGC 97
BSNT_02666___ 98 CTGGAATATTGATTCTTATGACTTGTTTTACTCGCATCGTCATTGTTCTG 147
|.||.||..|||||.|.|||||.||.|||||..|.||||||||.||.|||
RBAM_016190__ 98 CGGGGATTCTGATTTTGATGACCTGCTTTACGAGAATCGTCATCGTCCTG 147
BSNT_02666___ 148 TCATTTGTCAGAACTTCACTTGCGACGCA-ATCTATGCCCCCAAACCAGG 196
||.|||||.|||||.|||||.|||||||| |.| |||||.||.|||||||
RBAM_016190__ 148 TCTTTTGTAAGAACCTCACTGGCGACGCAGAAC-ATGCCTCCCAACCAGG 196
BSNT_02666___ 197 TTCTTATCGGGCTTGCGCTGTTTTTAACATTTTTTATCATGGCTCCTACT 246
||.|.|||||.|||||||||||.||.||.||||||||.|||||.||.|||
RBAM_016190__ 197 TTTTAATCGGCCTTGCGCTGTTCTTGACGTTTTTTATTATGGCGCCGACT 246
BSNT_02666___ 247 TTTTCAGAAATTAATAAAGAAGCGCTGACCCCATTAATGGACAACAAAAT 296
||||||||.||||||||.|||||..|.||.||..|.||||||||||||||
RBAM_016190__ 247 TTTTCAGAGATTAATAAGGAAGCCTTAACGCCGCTGATGGACAACAAAAT 296
BSNT_02666___ 297 CAGCTTGGATGAAGCGTATACGAAAGCTGAGGAACCGATTAAAGAATTTA 346
|||..|.||||||||.|||||.|||||.|||.|.|||||||||||.|.||
RBAM_016190__ 297 CAGTCTCGATGAAGCATATACAAAAGCCGAGAAGCCGATTAAAGAGTATA 346
BSNT_02666___ 347 TGAGTAAACACACAAGGCAGAAGGATCTGGCGCTGTTTATGAATTACGCG 396
||||.||.||.||||||||||||||||||||||||||||||||.||.||.
RBAM_016190__ 347 TGAGCAAGCATACAAGGCAGAAGGATCTGGCGCTGTTTATGAACTATGCC 396
BSNT_02666___ 397 AAAATGGATAAACCTGAATC-ATTAAAGGATATTCCGTTAACAACAATGG 445
||||||.|.||||||||||| ||| .||||||||||.||.||.||.||||
RBAM_016190__ 397 AAAATGAAAAAACCTGAATCGATT-CAGGATATTCCTTTGACGACGATGG 445
BSNT_02666___ 446 TTCCGGCTTTTGCCATATCGGAGCTTAAAACAGCATTTCAAATAGGTTTT 495
|.||.||||.|||.|||||.||.||.|||||.||.||||||||.||.|||
RBAM_016190__ 446 TGCCCGCTTATGCGATATCAGAACTCAAAACCGCTTTTCAAATGGGCTTT 495
BSNT_02666___ 496 ATGATTTTTATCCCTTTTTTAATTATAGATATGGTAGTGGCGAGCGTCTT 545
|||||||||||.||.|||||||||||.||||||||.||||||||||||||
RBAM_016190__ 496 ATGATTTTTATTCCGTTTTTAATTATCGATATGGTCGTGGCGAGCGTCTT 545
BSNT_02666___ 546 GATGTCAATGGGAATGATGATGCTGCCTCCAGTTATGATTTCTCTGCCCT 595
.|||||||||||||||||||||||.||.||.||||||||.||||||||||
RBAM_016190__ 546 AATGTCAATGGGAATGATGATGCTACCGCCGGTTATGATCTCTCTGCCCT 595
BSNT_02666___ 596 TTAAAATATTACTTTTTGTTTTGGTAGACGGCTGGTATTTAATTGTGAAA 645
||||||||||.|||||.||||||||.||.||.|||||||||||.||||||
RBAM_016190__ 596 TTAAAATATTGCTTTTCGTTTTGGTCGATGGATGGTATTTAATCGTGAAA 645
BSNT_02666___ 646 TCTTTGCTTCAGAGCTTTTAG 666
|||||||||.|.|||||||||
RBAM_016190__ 646 TCTTTGCTTGACAGCTTTTAG 666
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