Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02665 and RBAM_016180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:33
# Commandline: needle
# -asequence dna-align/BSNT_02665___fliZ.1.9828.seq
# -bsequence dna-align/RBAM_016180___fliZ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02665___fliZ-RBAM_016180___fliZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02665___fliZ-RBAM_016180___fliZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02665___fliZ
# 2: RBAM_016180___fliZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 671
# Identity: 499/671 (74.4%)
# Similarity: 499/671 (74.4%)
# Gaps: 28/671 ( 4.2%)
# Score: 1753.0
#
#
#=======================================
BSNT_02665___ 1 TTGAAAAAGAGTCAATATTTTA-TCGTTTTTATTTGTTTTTTCGTTTTAT 49
||||||||||||| ||..|||| |.|.|||.|||||||.||||||||||.
RBAM_016180__ 1 TTGAAAAAGAGTC-ATGGTTTACTAGCTTTGATTTGTTGTTTCGTTTTAC 49
BSNT_02665___ 50 TCAGTGTACATCCGATTGCTGCTGCCGCGGCAGACTCTGATAATTCAACT 99
|||.||||||||||.|..|||||...|||||.||.|||||.|||||.||.
RBAM_016180__ 50 TCAATGTACATCCGTTCCCTGCTTTTGCGGCGGAGTCTGACAATTCCACC 99
BSNT_02665___ 100 GTAAACGAATGGTTTCA-AAAGAAAGATGAAAAAACTGCAGATCAATCAG 148
||.||||||||||||.| |||.| ||.||.|||| .||.|||
RBAM_016180__ 100 GTCAACGAATGGTTTGACAAACA---ATCAACAAAC-------AAAACAG 139
BSNT_02665___ 149 AGCAAAAGAAAGAAAAAACAACAAAAACTGCTGAT---GAGACGGAGGGA 195
||.||||.|..||.|.|.|.|.|.||||.|||||| ||||..| ||||
RBAM_016180__ 140 AGAAAAAAAGCGATACATCGAAACAAACGGCTGATCAAGAGATAG-GGGA 188
BSNT_02665___ 196 -GCGGCTGCTCCTTCTGTCTCAGCTTTTGATTTTGTAAAGATGATTTTCG 244
||..||||..||||||||||.||||||||||||||||||||||||...|
RBAM_016180__ 189 TGCTTCTGCATCTTCTGTCTCCGCTTTTGATTTTGTAAAGATGATTGGGG 238
BSNT_02665___ 245 CTTTACTGTTTGTTATCGCGCTGATTTACGGGCTGGTTAAGCTCATGAAC 294
|.|||.|.||.||.||...||||||.||.||..|.||.||.||.|||||.
RBAM_016180__ 239 CGTTATTATTCGTCATTCTGCTGATCTATGGATTTGTCAAACTGATGAAT 288
BSNT_02665___ 295 AAAAGAAATCGGCTCCTAAAGCCTTTTCAATATGTTGAAAATATTGGCGG 344
|.||||||.||.||.||.|||||.|||||||||||.||||||||.|||||
RBAM_016180__ 289 AGAAGAAACCGTCTGCTGAAGCCGTTTCAATATGTAGAAAATATCGGCGG 338
BSNT_02665___ 345 CACATCGGTCGGCCAGAACAGATCCATACAATTGATCAAGGTCGGGAAA- 393
.||.||.||||||||.|||.|.|||.|.||..|||||||.|| ||||||
RBAM_016180__ 339 AACGTCAGTCGGCCAAAACCGTTCCGTGCAGCTGATCAAAGT-GGGAAAC 387
BSNT_02665___ 394 AGTGTGCTCGTCGTCGGTGTAGGAGAGACGATCCAGCTGCTGAAAGAAAT 443
||.||.|||||.||||||||.||.||.|||||.|||||..|.||||||||
RBAM_016180__ 388 AGCGTTCTCGTAGTCGGTGTGGGCGAAACGATACAGCTTTTAAAAGAAAT 437
BSNT_02665___ 444 TGAGGATGAAAAAGAGATTGAAGTCATTCTCAGTCAGCATGAAGAGGCAA 493
|||.||||||||||||...||.|..|||||.||.||..|.||||||.|.|
RBAM_016180__ 438 TGAAGATGAAAAAGAGCGCGAGGCGATTCTGAGCCAATACGAAGAGTCGA 487
BSNT_02665___ 494 TGTCAAGCAAAA-TAGAGTGGCAAAAGTTTGTGAAGCCGCTTAAGAGTTC 542
|||| ..||||| |.||.|||...|||.|.||.||.||||.||||..|..
RBAM_016180__ 488 TGTC-TTCAAAAGTGGAATGGACCAAGCTCGTAAATCCGCGTAAGGATGG 536
BSNT_02665___ 543 TGAACATCAGCCGCAGCAA--AAACTGCCTTCATTTTCAAAAGCATTAAA 590
.|||.|..||||||| || |..||.||.||.|||||||||||..|.||
RBAM_016180__ 537 AGAAAAAAAGCCGCA--AACGATGCTTCCGTCGTTTTCAAAAGCGCTGAA 584
BSNT_02665___ 591 AGAGCAACTTGAA-GAGTTAAAACAAAACCGTTCTGAAGGAAAGAAGAAA 639
|||.||.| |||| |||.|.|||||||.||||||||||||||||||||||
RBAM_016180__ 585 AGAACAGC-TGAACGAGCTGAAACAAAGCCGTTCTGAAGGAAAGAAGAAA 633
BSNT_02665___ 640 GGCCCACGTCATCATGAATGA 660
|||||...|||.|||||||||
RBAM_016180__ 634 GGCCCTTATCACCATGAATGA 654
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