Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02663 and RBAM_016160

See Amino acid alignment / Visit BSNT_02663 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:33
# Commandline: needle
#    -asequence dna-align/BSNT_02663___fliY.1.9828.seq
#    -bsequence dna-align/RBAM_016160___fliY.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02663___fliY-RBAM_016160___fliY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02663___fliY-RBAM_016160___fliY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02663___fliY
# 2: RBAM_016160___fliY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1172
# Identity:     883/1172 (75.3%)
# Similarity:   883/1172 (75.3%)
# Gaps:          70/1172 ( 6.0%)
# Score: 3276.0
# 
#
#=======================================

BSNT_02663___      1 ATGGAGAATAATAGATTATCTCAAGATGAGATTGACGCGCTTCTTAACGG     50
                     ||   |||.||||||||||||||||||||.||.||.||.|||||||||||
RBAM_016160__      1 AT---GAACAATAGATTATCTCAAGATGAAATCGATGCTCTTCTTAACGG     47

BSNT_02663___     51 TACTGGCAG-CACGCTTGATGAGCCAGAGGTTCCGGAAGTAG-----ATG     94
                     .||..|||| ||      ||    ||||||.|.|.||| .||     |.|
RBAM_016160__     48 CACAAGCAGTCA------AT----CAGAGGATACAGAA-CAGCCTCAAGG     86

BSNT_02663___     95 -----ACTTATCGGAAATGGAGCGTGATGCGATCGGTGAAATCGGTAATA    139
                          ||||.||.|||.|.|||||.|||||||||||.||||||||.||||
RBAM_016160__     87 GGCAAACTTGTCTGAACTTGAGCGCGATGCGATCGGAGAAATCGGGAATA    136

BSNT_02663___    140 TTTCATTCGGCAGTTCTGCGACAGCACTGTCAACGCTTTTAAATCAAAAG    189
                     ||||.||||||||.||.||.||.||.|||||.||.||||||||||||||.
RBAM_016160__    137 TTTCGTTCGGCAGCTCGGCTACGGCGCTGTCCACTCTTTTAAATCAAAAA    186

BSNT_02663___    190 GTCGATATTACGACTCCAAGCGTAACGGTCATTCCAAGAAGTAAAATCAG    239
                     ||.||.||||||||.||.||.||.||.||||||.|||.|||.||||||||
RBAM_016160__    187 GTGGACATTACGACGCCGAGTGTGACCGTCATTTCAAAAAGCAAAATCAG    236

BSNT_02663___    240 CGATGCATTTCCTGAACCGTATGTAGCGATTGAAGTGAATTATACGGAGG    289
                     .||||.|||||||.|.||||||||.||.|||||||||||.||.||.||.|
RBAM_016160__    237 TGATGAATTTCCTCATCCGTATGTTGCCATTGAAGTGAACTACACAGAAG    286

BSNT_02663___    290 GCTTCAGCGGAAGCAACCTGTTAGTCGTGGAACAAAGTGACGCGGCGATC    339
                     ||||...|||.|||||..||.|.|||||.||||||||.||||||||.|||
RBAM_016160__    287 GCTTTGACGGCAGCAATTTGCTCGTCGTCGAACAAAGCGACGCGGCCATC    336

BSNT_02663___    340 ATTGCTGACTTAATGATCGGGGGAGACGGAAAAGGTGCGGACCCTTCACT    389
                     ||.||.||.||.||||||||.||||||||....||.||.||.||.|||||
RBAM_016160__    337 ATCGCGGATTTGATGATCGGCGGAGACGGCCGGGGCGCCGATCCGTCACT    386

BSNT_02663___    390 GGGTGAAATCCATTTAAGTGCGGTTCAAGAAGCAATGAACCAAATGATGG    439
                     .|||||||||||..|.||.||.||.||.|||||||||||.||||||||||
RBAM_016160__    387 CGGTGAAATCCACCTGAGCGCCGTGCAGGAAGCAATGAATCAAATGATGG    436

BSNT_02663___    440 GATCGGCTGCCACATCAATGTCTACTGTATTCAGTAAAAAAATTGATATT    489
                     |.||||||||.||.||||||||.||.||.|||||||||||.|||||.|||
RBAM_016160__    437 GCTCGGCTGCTACGTCAATGTCGACCGTGTTCAGTAAAAAGATTGACATT    486

BSNT_02663___    490 TCACCTCCTCGGGTTGAATTGTTGGATGTTACTGAAGAAAAGGGTACAGA    539
                     ||.||.||..||||||||.|..|||||||.|..||||||||.||.||.||
RBAM_016160__    487 TCTCCGCCAAGGGTTGAACTTCTGGATGTGATGGAAGAAAAAGGAACTGA    536

BSNT_02663___    540 CCGTATTCCTGATGATGAAATGCTGGTGAAAGTTTC-TTTCAACTTAAAG    588
                     |.|.||.|||||.|||||..||||.||.|||||.|| ||.|..||.||| 
RBAM_016160__    537 CAGAATACCTGAGGATGACCTGCTCGTAAAAGTGTCATTCCGTCTGAAA-    585

BSNT_02663___    589 GTGGGAGAATTAATAGACTCCAGCATTATGCAGCTTTA-CCCATTGACAT    637
                     ||.||.||||||||.||.||.|||||.||||||||||| ||.||| ||.|
RBAM_016160__    586 GTCGGCGAATTAATCGATTCGAGCATCATGCAGCTTTATCCGATT-ACGT    634

BSNT_02663___    638 TTGCGAAAGATTTAATTTCAAGCCTTATGAACT-CAGA-------AAGTG    679
                     |||||||||||.|.||..||..|||.||| ||| ||||       .||| 
RBAM_016160__    635 TTGCGAAAGATCTGATCGCAGACCTGATG-ACTGCAGACCAGCATGAGT-    682

BSNT_02663___    680 CAGAGGAAGAAGAAACGGT-GCAG--CCCGAAGTTACATACGAA------    720
                     ||||||..|.||||||.|| .|||  ||..|.|..|||||||||      
RBAM_016160__    683 CAGAGGCCGCAGAAACCGTATCAGAACCACAGGAAACATACGAAACGCCG    732

BSNT_02663___    721 CAGCCGAAAGAGCCTG---TGACGCCAGAGCCGCGTATTGAACCGAAGCA    767
                     ||||||   ||.||||   ||..|||.|||||||           |.|||
RBAM_016160__    733 CAGCCG---GAACCTGCCATGCAGCCGGAGCCGC-----------AGGCA    768

BSNT_02663___    768 ACAGCAGCAGCCGCCAAAAAGGCAGGGAACAGCAAAAAAAGCAGCGCCAG    817
                     |.|.|.| |||..||.||.||.||||||||.||.||||||||.||.||.|
RBAM_016160__    769 AAACCCG-AGCTTCCGAAGAGACAGGGAACCGCCAAAAAAGCTGCTCCTG    817

BSNT_02663___    818 TTCAGGTTTCACCGGTGGAATTTTCC--GCGTTTGATCCAAACGAAGCTG    865
                     ||||.||..|.|||||.|||  ||||  ||||||||||..||||||||.|
RBAM_016160__    818 TTCAAGTCGCTCCGGTAGAA--TTCCAGGCGTTTGATCATAACGAAGCGG    865

BSNT_02663___    866 TACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCG    915
                     ..||||...|.|...||||.||.||||||||..|||||||.||||||||.
RBAM_016160__    866 CGCAAGGATCAAGGAATAACCTTGATATGCTGATGGATATTCCGCTTTCC    915

BSNT_02663___    916 ATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGA    965
                     .||||.||||||||.||||||||||||||||||||.|||||.||..|.||
RBAM_016160__    916 GTTACGGTTGAGCTCGGCAGAACGAAGAGAAGCGTCAAAGAAATCCTTGA    965

BSNT_02663___    966 GCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCTGGTGAGCCTG   1015
                     .||||||||.|||||.|||||.||||||||.||..|.||||||||.||||
RBAM_016160__    966 ACTTTCTGCGGGAAGCATTATTGAGCTTGACAAGCTGGCTGGTGAACCTG   1015

BSNT_02663___   1016 TAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTC   1065
                     |.||.||..|.||.||.|||||.|||||.||.||.|||||||||||||||
RBAM_016160__   1016 TTGACATCCTGGTCAACCAGCGGATCGTGGCAAAGGGCGAGGTCGTTGTC   1065

BSNT_02663___   1066 ATTGAAGAAAACTTCGGAGTAAGAGTCACTGACATTTTAAGCCAGGCAGA   1115
                     ||.||||||||||||||.||.|||||||||||.||||||||.||||||||
RBAM_016160__   1066 ATAGAAGAAAACTTCGGCGTGAGAGTCACTGATATTTTAAGTCAGGCAGA   1115

BSNT_02663___   1116 GCGCATTAATAATTTAAAATAA   1137
                     .|||.||||.||||||||||||
RBAM_016160__   1116 CCGCCTTAACAATTTAAAATAA   1137


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