Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02663 and RBAM_016160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:33
# Commandline: needle
# -asequence dna-align/BSNT_02663___fliY.1.9828.seq
# -bsequence dna-align/RBAM_016160___fliY.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02663___fliY-RBAM_016160___fliY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02663___fliY-RBAM_016160___fliY.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02663___fliY
# 2: RBAM_016160___fliY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1172
# Identity: 883/1172 (75.3%)
# Similarity: 883/1172 (75.3%)
# Gaps: 70/1172 ( 6.0%)
# Score: 3276.0
#
#
#=======================================
BSNT_02663___ 1 ATGGAGAATAATAGATTATCTCAAGATGAGATTGACGCGCTTCTTAACGG 50
|| |||.||||||||||||||||||||.||.||.||.|||||||||||
RBAM_016160__ 1 AT---GAACAATAGATTATCTCAAGATGAAATCGATGCTCTTCTTAACGG 47
BSNT_02663___ 51 TACTGGCAG-CACGCTTGATGAGCCAGAGGTTCCGGAAGTAG-----ATG 94
.||..|||| || || ||||||.|.|.||| .|| |.|
RBAM_016160__ 48 CACAAGCAGTCA------AT----CAGAGGATACAGAA-CAGCCTCAAGG 86
BSNT_02663___ 95 -----ACTTATCGGAAATGGAGCGTGATGCGATCGGTGAAATCGGTAATA 139
||||.||.|||.|.|||||.|||||||||||.||||||||.||||
RBAM_016160__ 87 GGCAAACTTGTCTGAACTTGAGCGCGATGCGATCGGAGAAATCGGGAATA 136
BSNT_02663___ 140 TTTCATTCGGCAGTTCTGCGACAGCACTGTCAACGCTTTTAAATCAAAAG 189
||||.||||||||.||.||.||.||.|||||.||.||||||||||||||.
RBAM_016160__ 137 TTTCGTTCGGCAGCTCGGCTACGGCGCTGTCCACTCTTTTAAATCAAAAA 186
BSNT_02663___ 190 GTCGATATTACGACTCCAAGCGTAACGGTCATTCCAAGAAGTAAAATCAG 239
||.||.||||||||.||.||.||.||.||||||.|||.|||.||||||||
RBAM_016160__ 187 GTGGACATTACGACGCCGAGTGTGACCGTCATTTCAAAAAGCAAAATCAG 236
BSNT_02663___ 240 CGATGCATTTCCTGAACCGTATGTAGCGATTGAAGTGAATTATACGGAGG 289
.||||.|||||||.|.||||||||.||.|||||||||||.||.||.||.|
RBAM_016160__ 237 TGATGAATTTCCTCATCCGTATGTTGCCATTGAAGTGAACTACACAGAAG 286
BSNT_02663___ 290 GCTTCAGCGGAAGCAACCTGTTAGTCGTGGAACAAAGTGACGCGGCGATC 339
||||...|||.|||||..||.|.|||||.||||||||.||||||||.|||
RBAM_016160__ 287 GCTTTGACGGCAGCAATTTGCTCGTCGTCGAACAAAGCGACGCGGCCATC 336
BSNT_02663___ 340 ATTGCTGACTTAATGATCGGGGGAGACGGAAAAGGTGCGGACCCTTCACT 389
||.||.||.||.||||||||.||||||||....||.||.||.||.|||||
RBAM_016160__ 337 ATCGCGGATTTGATGATCGGCGGAGACGGCCGGGGCGCCGATCCGTCACT 386
BSNT_02663___ 390 GGGTGAAATCCATTTAAGTGCGGTTCAAGAAGCAATGAACCAAATGATGG 439
.|||||||||||..|.||.||.||.||.|||||||||||.||||||||||
RBAM_016160__ 387 CGGTGAAATCCACCTGAGCGCCGTGCAGGAAGCAATGAATCAAATGATGG 436
BSNT_02663___ 440 GATCGGCTGCCACATCAATGTCTACTGTATTCAGTAAAAAAATTGATATT 489
|.||||||||.||.||||||||.||.||.|||||||||||.|||||.|||
RBAM_016160__ 437 GCTCGGCTGCTACGTCAATGTCGACCGTGTTCAGTAAAAAGATTGACATT 486
BSNT_02663___ 490 TCACCTCCTCGGGTTGAATTGTTGGATGTTACTGAAGAAAAGGGTACAGA 539
||.||.||..||||||||.|..|||||||.|..||||||||.||.||.||
RBAM_016160__ 487 TCTCCGCCAAGGGTTGAACTTCTGGATGTGATGGAAGAAAAAGGAACTGA 536
BSNT_02663___ 540 CCGTATTCCTGATGATGAAATGCTGGTGAAAGTTTC-TTTCAACTTAAAG 588
|.|.||.|||||.|||||..||||.||.|||||.|| ||.|..||.|||
RBAM_016160__ 537 CAGAATACCTGAGGATGACCTGCTCGTAAAAGTGTCATTCCGTCTGAAA- 585
BSNT_02663___ 589 GTGGGAGAATTAATAGACTCCAGCATTATGCAGCTTTA-CCCATTGACAT 637
||.||.||||||||.||.||.|||||.||||||||||| ||.||| ||.|
RBAM_016160__ 586 GTCGGCGAATTAATCGATTCGAGCATCATGCAGCTTTATCCGATT-ACGT 634
BSNT_02663___ 638 TTGCGAAAGATTTAATTTCAAGCCTTATGAACT-CAGA-------AAGTG 679
|||||||||||.|.||..||..|||.||| ||| |||| .|||
RBAM_016160__ 635 TTGCGAAAGATCTGATCGCAGACCTGATG-ACTGCAGACCAGCATGAGT- 682
BSNT_02663___ 680 CAGAGGAAGAAGAAACGGT-GCAG--CCCGAAGTTACATACGAA------ 720
||||||..|.||||||.|| .||| ||..|.|..|||||||||
RBAM_016160__ 683 CAGAGGCCGCAGAAACCGTATCAGAACCACAGGAAACATACGAAACGCCG 732
BSNT_02663___ 721 CAGCCGAAAGAGCCTG---TGACGCCAGAGCCGCGTATTGAACCGAAGCA 767
|||||| ||.|||| ||..|||.||||||| |.|||
RBAM_016160__ 733 CAGCCG---GAACCTGCCATGCAGCCGGAGCCGC-----------AGGCA 768
BSNT_02663___ 768 ACAGCAGCAGCCGCCAAAAAGGCAGGGAACAGCAAAAAAAGCAGCGCCAG 817
|.|.|.| |||..||.||.||.||||||||.||.||||||||.||.||.|
RBAM_016160__ 769 AAACCCG-AGCTTCCGAAGAGACAGGGAACCGCCAAAAAAGCTGCTCCTG 817
BSNT_02663___ 818 TTCAGGTTTCACCGGTGGAATTTTCC--GCGTTTGATCCAAACGAAGCTG 865
||||.||..|.|||||.||| |||| ||||||||||..||||||||.|
RBAM_016160__ 818 TTCAAGTCGCTCCGGTAGAA--TTCCAGGCGTTTGATCATAACGAAGCGG 865
BSNT_02663___ 866 TACAAGCCCCTATTCATAATCTGGATATGCTTTTGGATATCCCGCTTTCG 915
..||||...|.|...||||.||.||||||||..|||||||.||||||||.
RBAM_016160__ 866 CGCAAGGATCAAGGAATAACCTTGATATGCTGATGGATATTCCGCTTTCC 915
BSNT_02663___ 916 ATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGATTTTAGA 965
.||||.||||||||.||||||||||||||||||||.|||||.||..|.||
RBAM_016160__ 916 GTTACGGTTGAGCTCGGCAGAACGAAGAGAAGCGTCAAAGAAATCCTTGA 965
BSNT_02663___ 966 GCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCTGGTGAGCCTG 1015
.||||||||.|||||.|||||.||||||||.||..|.||||||||.||||
RBAM_016160__ 966 ACTTTCTGCGGGAAGCATTATTGAGCTTGACAAGCTGGCTGGTGAACCTG 1015
BSNT_02663___ 1016 TAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTCGTTGTC 1065
|.||.||..|.||.||.|||||.|||||.||.||.|||||||||||||||
RBAM_016160__ 1016 TTGACATCCTGGTCAACCAGCGGATCGTGGCAAAGGGCGAGGTCGTTGTC 1065
BSNT_02663___ 1066 ATTGAAGAAAACTTCGGAGTAAGAGTCACTGACATTTTAAGCCAGGCAGA 1115
||.||||||||||||||.||.|||||||||||.||||||||.||||||||
RBAM_016160__ 1066 ATAGAAGAAAACTTCGGCGTGAGAGTCACTGATATTTTAAGTCAGGCAGA 1115
BSNT_02663___ 1116 GCGCATTAATAATTTAAAATAA 1137
.|||.||||.||||||||||||
RBAM_016160__ 1116 CCGCCTTAACAATTTAAAATAA 1137
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