Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02656 and RBAM_016120

See Amino acid alignment / Visit BSNT_02656 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:32
# Commandline: needle
#    -asequence dna-align/BSNT_02656___flgG.1.9828.seq
#    -bsequence dna-align/RBAM_016120___flgG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02656___flgG-RBAM_016120___flgG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02656___flgG-RBAM_016120___flgG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02656___flgG
# 2: RBAM_016120___flgG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 822
# Identity:     579/822 (70.4%)
# Similarity:   579/822 (70.4%)
# Gaps:          72/822 ( 8.8%)
# Score: 1909.0
# 
#
#=======================================

BSNT_02656___      1 ATGTTACGTTCACTTTATTCTGGAATCAGCGGTATGAAGAACTTTCAAAC     50
                     ||||||||||||.|.|||||.||.||||||||.|||||.||||||||.||
RBAM_016120__      1 ATGTTACGTTCATTATATTCCGGTATCAGCGGCATGAAAAACTTTCAGAC     50

BSNT_02656___     51 AAAGCTTGACGTAATCGGTAACAACATTGCCAACGTAAATACAGTAGGAT    100
                     |||.||.||.||||||||.||.|||||.||||||||.||.|||||.||||
RBAM_016120__     51 AAAACTAGATGTAATCGGCAATAACATCGCCAACGTCAACACAGTGGGAT    100

BSNT_02656___    101 TCAAAAAGAGCCGTGTGACCTTTAAAGATATGGTAAGCCAAACGATTGCC    150
                     |.||.||.|||||.||.||.||||||||||||.|.|||||.||..|.|||
RBAM_016120__    101 TTAAGAAAAGCCGCGTTACATTTAAAGATATGATCAGCCAGACAGTCGCC    150

BSNT_02656___    151 GGCGGTTCTGCTGCTGGTGCAACAATCG-GCGGAACAAACTCTAAGCAAA    199
                     |||||||               |||.|| |    ||.||.||.||.||||
RBAM_016120__    151 GGCGGTT---------------CAAACGTG----ACCAATTCAAAACAAA    181

BSNT_02656___    200 TCGGTTTAGGTTC----ATCATCTGGCACAATTGATACAATTCATTCAAC    245
                     ||||.||.|||.|    | |.|||   .|.||||||....||||||||||
RBAM_016120__    182 TCGGCTTGGGTGCCGCGA-CTTCT---TCCATTGATGTTGTTCATTCAAC    227

BSNT_02656___    246 AAGCGCGACACAAAG----CACAGGAAGAACACTTGATTTAGCAATTGAC    291
                     ..||||  |.|..||    |||| |||.||.|| .||..||||.||||||
RBAM_016120__    228 CGGCGC--CCCGCAGGCTACACA-GAATAAAAC-CGACCTAGCCATTGAC    273

BSNT_02656___    292 GGCGACGGTTACTTCCGAATTGATACAGGTGACGGGACA--GCTTATACA    339
                     ||.|||||.|||||.|..|||.||||||||| ||||| |  |.|||.|||
RBAM_016120__    274 GGAGACGGCTACTTTCAGATTAATACAGGTG-CGGGA-ATTGTTTACACA    321

BSNT_02656___    340 AGAGCAGGGAACTTCTATTTAGATAAT-ACCGGAACACTGGTTACAGGTG    388
                     .|.||.|||||.|||......||.||| |..||||| ||.|||||...||
RBAM_016120__    322 CGTGCGGGGAATTTCGGAAAGGACAATCAAGGGAAC-CTTGTTACGACTG    370

BSNT_02656___    389 ATGGCTACCATGTGTTAAATATGAAT----GGGGGAACAATTAAAATTCC    434
                     |.||.|||.||.|...|||    |||    ||.||.|.|||.||.|||||
RBAM_016120__    371 ACGGGTACTATCTTGAAAA----AATCGGCGGCGGCAAAATCAATATTCC    416

BSNT_02656___    435 TACTGATGCTCAAAGCTT-TAGCATTGGTTCTGATGGAAAGGTGTCAATT    483
                     .|||||||| .||||.|| .|||||.|||.|.||.||||..||..||   
RBAM_016120__    417 GACTGATGC-GAAAGATTACAGCATCGGTGCAGACGGAACCGTTACA---    462

BSNT_02656___    484 GT----TGATGCTGAGGGGA--AAACACAAGACGGGGGACAAATCGGGAT    527
                      |    ||||||  ||||||  |....||.||.|..|||||||||||..|
RBAM_016120__    463 -TACACTGATGC--AGGGGATGAGGTTCATGATGCCGGACAAATCGGTTT    509

BSNT_02656___    528 TGTTACTTTTGCCAACAGTGATGGATTGGATAAAATCGGAAGAAACCTAT    577
                     .||.||.||..|.|||||.|..||..||||.|||||||||.|.|||||.|
RBAM_016120__    510 GGTCACGTTCCCTAACAGCGCCGGTCTGGAAAAAATCGGAGGCAACCTTT    559

BSNT_02656___    578 ACCGTGAATCTTTAAACTCTGGAACGGCCAGTGCAG-CGAACCA-GCCTG    625
                     ||.|.|||||.||||..||.|||.|.||.||.|||| |  |||| .||.|
RBAM_016120__    560 ACAGAGAATCATTAAGTTCAGGAGCTGCGAGCGCAGTC--ACCACTCCGG    607

BSNT_02656___    626 GTGACGGCGGAACTGGT--GCTCTTAAATCAGGATTTCTCGAAATGTCTA    673
                     |.||...||||||.|||  |||.||  ..||||.|.|||.||||||||.|
RBAM_016120__    608 GCGAAAACGGAACGGGTAAGCTTTT--GGCAGGCTATCTTGAAATGTCAA    655

BSNT_02656___    674 ACGTCGATTTAACTGACGAATTTACTGAAATGATCGTAGCCCAGCGCGGA    723
                     ||||.|||.|.||.||.||||||||.|||||||||||.||.|||||.||.
RBAM_016120__    656 ACGTAGATCTGACAGATGAATTTACCGAAATGATCGTTGCTCAGCGGGGT    705

BSNT_02656___    724 TTCCAATCAAACTCAAAAATTATTACAACATCTGATGAAATCCTTCAAGA    773
                     ||||||||||||||||||||.|||||.||.||.||||||||||||||.||
RBAM_016120__    706 TTCCAATCAAACTCAAAAATCATTACGACTTCAGATGAAATCCTTCAGGA    755

BSNT_02656___    774 ACTGGTTAACCTTAAACGTTAA    795
                     .||||||||.||.|||||.|||
RBAM_016120__    756 GCTGGTTAATCTGAAACGGTAA    777


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02656 and RBAM_016120

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
