Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02641 and RBAM_016020

See Amino acid alignment / Visit BSNT_02641 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:31
# Commandline: needle
#    -asequence dna-align/BSNT_02641___flgC.1.9828.seq
#    -bsequence dna-align/RBAM_016020___flgC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02641___flgC-RBAM_016020___flgC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02641___flgC-RBAM_016020___flgC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02641___flgC
# 2: RBAM_016020___flgC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 460
# Identity:     354/460 (77.0%)
# Similarity:   354/460 (77.0%)
# Gaps:          14/460 ( 3.0%)
# Score: 1319.0
# 
#
#=======================================

BSNT_02641___      1 ATGACAGCTTTTCATAGCTTAAATGTTTCAGCATCGGCTTTAACAGCTCA     50
                     ||||..|..|||||.|||||||||.||||.|..||.||||||||.||.||
RBAM_016020__      1 ATGAGTGGCTTTCAAAGCTTAAATATTTCGGGCTCCGCTTTAACTGCACA     50

BSNT_02641___     51 GCGAGTCAGAATGGACGTTGTATCATCTAACTTAGCAAATATGGATACGA    100
                     |||.|||.|.||||||||.|||||.||.|||.|.||.|||||||||||.|
RBAM_016020__     51 GCGTGTCCGGATGGACGTCGTATCGTCCAACCTGGCCAATATGGATACAA    100

BSNT_02641___    101 CAAGAGCTAAGCAGGTGAATGGAGAGTGGGTGCCTTACAGAAGAAAAATG    150
                     |.|||||.||||||||.|||||.||.||||||||||||||||||||..||
RBAM_016020__    101 CGAGAGCGAAGCAGGTAAATGGCGAATGGGTGCCTTACAGAAGAAAGCTG    150

BSNT_02641___    151 GTCTCCCTTCAGTCAAAAGGTGAATCGTTCTCTTCCATTCTCAATTCTCA    200
                     ||.||.||.||.||...|||.|||||.||.||.|||.||.|..|||| ||
RBAM_016020__    151 GTATCTCTCCAATCCGGAGGCGAATCATTTTCGTCCCTTTTACATTC-CA    199

BSNT_02641___    201 A-ATGAGCGGAAGCGGGAA-TGCTGGAAACGGTGTGAAGGTTTCAAAAAT    248
                     | ||||.||||| |.|||| .||.|||||.||.||.|||||.||.....|
RBAM_016020__    200 AGATGAACGGAA-CAGGAAGCGCGGGAAATGGCGTAAAGGTATCTGGTGT    248

BSNT_02641___    249 TACGGAGGATGATTCGGATTTTAATCTTGTCTATGATCCGACAG-ACCCT    297
                     ||||||.||....||.|.|||||||||.||.||||||||| .|| |.|||
RBAM_016020__    249 TACGGAAGACCCGTCCGCTTTTAATCTCGTTTATGATCCG-GAGAATCCT    297

BSNT_02641___    298 GATGC----AAACGCTGATGGATATGTACAAAAGCCTAATGTTGATCCAT    343
                     |||||    |||    ||.||||||||||||||.||.|||||.|||||||
RBAM_016020__    298 GATGCGAATAAA----GACGGATATGTACAAAAACCAAATGTAGATCCAT    343

BSNT_02641___    344 TAAAGGAAATGGTTGATCTTGTCAGCAGCACCAGATCATATGAGGCGAAT    393
                     ||||.||||||||.|||||||||||||||||.|||||||||||.||.||.
RBAM_016020__    344 TAAAAGAAATGGTGGATCTTGTCAGCAGCACGAGATCATATGAAGCAAAC    393

BSNT_02641___    394 GTCACGGCGATGAATGCCACAAAGGGAATGCTGATGAAGGCGTTAGAAAT    443
                     ||.||.||..|.||.||..|.||.||.|||||..||||||||||||||||
RBAM_016020__    394 GTAACTGCATTAAACGCTTCCAAAGGCATGCTTTTGAAGGCGTTAGAAAT    443

BSNT_02641___    444 CGGAAAGTAG    453
                     |||||||||.
RBAM_016020__    444 CGGAAAGTAA    453


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