Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02637 and RBAM_016000

See Amino acid alignment / Visit BSNT_02637 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:31
# Commandline: needle
#    -asequence dna-align/BSNT_02637___codY.1.9828.seq
#    -bsequence dna-align/RBAM_016000___codY.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02637___codY-RBAM_016000___codY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02637___codY-RBAM_016000___codY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02637___codY
# 2: RBAM_016000___codY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 782
# Identity:     642/782 (82.1%)
# Similarity:   642/782 (82.1%)
# Gaps:           4/782 ( 0.5%)
# Score: 2626.0
# 
#
#=======================================

BSNT_02637___      1 ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGC     50
                     |||||||||.|||||||||||.|||||||||||..|||||||||.|||||
RBAM_016000__      1 ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGC     50

BSNT_02637___     51 GGCAGGGAAACCGGTAAACTTCAAGGAAATGGCGGAGACGCTGCGGGATG    100
                     ||||||.|||||.||||||||.||.||||||||.||.|||||.||.||.|
RBAM_016000__     51 GGCAGGCAAACCCGTAAACTTTAAAGAAATGGCTGAAACGCTTCGTGACG    100

BSNT_02637___    101 TAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGG    150
                     |.||||||||.|||||||||||.||.|||||||||||.||.|| .|||||
RBAM_016000__    101 TCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCT-TTTGGG    149

BSNT_02637___    151 -TATTCTATTAACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTG    199
                      ||.||||||||.|||||.|||||||||||.||.||||||||||||||||
RBAM_016000__    150 CTACTCTATTAATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTG    199

BSNT_02637___    200 AGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCT    249
                     |.||.||.||.|||||.|||||.||.||||.|||||||||.|||||.||.
RBAM_016000__    200 AAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTCAATGTTCCG    249

BSNT_02637___    250 GAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGT    299
                     ||.||.|||||.|||.|.|||||.||.||.|||||.||.||.||.|||||
RBAM_016000__    250 GAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGT    299

BSNT_02637___    300 TGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCA    349
                     .||.||||||||||||||.|||||.||.||||||||.||.||||||||||
RBAM_016000__    300 AGAAAACAGAGACCTGTTCCAAGCGGGCTTAACAACGATCGTGCCGATCA    349

BSNT_02637___    350 TCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAT    399
                     ||||.||.||.||.|||.|.||.||.||.|||||.||.|||.|.||.|||
RBAM_016000__    350 TCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGAT    399

BSNT_02637___    400 CAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGT    449
                     |||||..|.||.|||||..|.|||||.|||||||||||.|||||.|||||
RBAM_016000__    400 CAATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGT    449

BSNT_02637___    450 CGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAA    499
                     .||||||||.||..|||||||||||||.||||||||.|||||.||.||..
RBAM_016000__    450 AGGAATGGAGATTTTAAGAGAAAAAGCGGAAGAAATCGAAGAAGAGGCGC    499

BSNT_02637___    500 GAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAG    549
                     ||||||||||.||.||.||||||||.|||||.||.||.|||||||||||.
RBAM_016000__    500 GAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAA    549

BSNT_02637___    550 CTTGAAGCAATTGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCT    599
                     ||||||||.||||||||.||.|||||.||||||||||||||.||||| ||
RBAM_016000__    550 CTTGAAGCGATTGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGG-CT    598

BSNT_02637___    600 T-CTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTT    648
                     | |||||.||||||||.|||||.|||||||||||||||||.|||||.||.
RBAM_016000__    599 TGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGCGTTCAGTA    648

BSNT_02637___    649 ATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAG    698
                     ||.||.||.||.||.|||||||||||.|||||.|||||.||.||.||.||
RBAM_016000__    649 ATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAG    698

BSNT_02637___    699 ATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCT    748
                     ||||.|.||||||||.||.||.||.||.||.||.||.||||||||||||.
RBAM_016000__    699 ATCACTGGGAATGAAGGGGACGTACATTAAAGTTCTGAACAACAAATTCC    748

BSNT_02637___    749 TAATTGAATTAGAAAATCTAAAATCTCATTAA    780
                     |.||.|||||.|||||.||.||||||||||||
RBAM_016000__    749 TTATCGAATTGGAAAACCTTAAATCTCATTAA    780


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