Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02634 and RBAM_015970

See Amino acid alignment / Visit BSNT_02634 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:31
# Commandline: needle
#    -asequence dna-align/BSNT_02634___xerC.1.9828.seq
#    -bsequence dna-align/RBAM_015970___xerC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02634___xerC-RBAM_015970___xerC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02634___xerC-RBAM_015970___xerC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02634___xerC
# 2: RBAM_015970___xerC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 920
# Identity:     751/920 (81.6%)
# Similarity:   751/920 (81.6%)
# Gaps:           7/920 ( 0.8%)
# Score: 3075.0
# 
#
#=======================================

BSNT_02634___      1 ATG---GAGAATGTTAAGAATTTCGTAAAGTTATTCGTTGAATATTTACA     47
                     |||   |||||||||||...|||..|||||||||||||||||||||||||
RBAM_015970__      1 ATGACTGAGAATGTTAACTTTTTTTTAAAGTTATTCGTTGAATATTTACA     50

BSNT_02634___     48 AATTGAAAAAAATAATTCACAATATACTATTGTGAATTATGTGGATTCAA     97
                     |||||||||||||.||||||||||||||||||||||||||||..||||.|
RBAM_015970__     51 AATTGAAAAAAATTATTCACAATATACTATTGTGAATTATGTTAATTCGA    100

BSNT_02634___     98 TTGAAGAATTCGAGACTTTCCTGCGCGTTCAAGGTATAAATGGATTTGAA    147
                     ||||||||||.|.||..||.||||..|.||||..||||||||||.|..||
RBAM_015970__    101 TTGAAGAATTTGGGATGTTTCTGCATGCTCAAAATATAAATGGAATGAAA    150

BSNT_02634___    148 GAAGCTGCATATCAAGATACTAGGATTTTTTTGACAGAAGCCTATGAAAA    197
                     ||||||||||||||.|||...||.||.|||||||||||.||.||||||||
RBAM_015970__    151 GAAGCTGCATATCATGATGTGAGAATATTTTTGACAGAGGCTTATGAAAA    200

BSNT_02634___    198 AGGTTTATCGAGAAGAACAATAAGCAAAAAGATATCTGCATTAAGAAGCT    247
                     |||..|.||.||||.||||||.|||||.||.||.||.||.||.|||||||
RBAM_015970__    201 AGGCCTGTCAAGAAAAACAATCAGCAAGAAAATTTCAGCTTTGAGAAGCT    250

BSNT_02634___    248 TTTATAAGTTTCTGATGCGGGAAAAGCTTATTGAAGAAAATCCGTTTCAG    297
                     |.|||||.|||.|.|||.|||||||||||.|||||||.||||||||||||
RBAM_015970__    251 TCTATAAATTTTTAATGAGGGAAAAGCTTGTTGAAGAGAATCCGTTTCAG    300

BSNT_02634___    298 CTTGTTCATCTGCCAAAACAGGAGAAACGGATACCGAAGTTTCTATATCA    347
                     ||||||||||||||.|||||.|||||||||||.|||||||||||.|||.|
RBAM_015970__    301 CTTGTTCATCTGCCGAAACAAGAGAAACGGATTCCGAAGTTTCTTTATGA    350

BSNT_02634___    348 AAAAGAGCTTGAGGAGCTGTTTGAAGTTTCAGATATAAGCCAGCCGGCCG    397
                     ||||||.||||||||.||.||.|..||||||||.|.|||.||||||.|.|
RBAM_015970__    351 AAAAGAACTTGAGGAACTATTCGCTGTTTCAGACAGAAGTCAGCCGTCAG    400

BSNT_02634___    398 GAATGAGGGATCAAGCGCTGTTAGAGCTGCTCTATGCCACCGGAATGAGG    447
                     |.|||.|.|||||.||.|||.|.|||||.||.|||||.||||||||||||
RBAM_015970__    401 GGATGCGCGATCAGGCCCTGCTTGAGCTTCTTTATGCGACCGGAATGAGG    450

BSNT_02634___    448 GTCAGTGAATGCTGTTCCATAACTATTAACGACGTTGATTTATTTATGGA    497
                     ||||||||.||||||.|..|.|||.|...|||..||||..|.||.|||||
RBAM_015970__    451 GTCAGTGAGTGCTGTACGCTCACTGTCGGCGATCTTGACCTGTTCATGGA    500

BSNT_02634___    498 CACTGTGCTTGTTCACGGTAAAGGCAAGAAGCAGCGCTATATCCCCTTTG    547
                     .||.|||||.||||||||.||||||||||||||||||||||||||.||.|
RBAM_015970__    501 TACGGTGCTCGTTCACGGGAAAGGCAAGAAGCAGCGCTATATCCCGTTCG    550

BSNT_02634___    548 GGTCTTATGCCCGCGAAGCGTTGAAGGTATACATGAATAGCGGAAGACAG    597
                     |.||.||||||||.||.|||.||.||.|.||.||.||.||||||||.|||
RBAM_015970__    551 GCTCATATGCCCGTGATGCGCTGGAGCTGTATATCAACAGCGGAAGGCAG    600

BSNT_02634___    598 TGCTTGCTGATG--AAGGCAAAAGAACCTCATGATCTATTATTCGTAAAT    645
                     |||.||||  ||  ||.|||||.||.|||||||||.|..|.||.||.|||
RBAM_015970__    601 TGCCTGCT--TGAAAAAGCAAAGGAGCCTCATGATGTGCTGTTTGTCAAT    648

BSNT_02634___    646 CAAAGAGGCGGACCGCTTACAGCCCGTGGCATCAGACATATTTTAAGCGG    695
                     |||||||||||.|||||.||.|||.|.||.|||.|..|||||||||||||
RBAM_015970__    649 CAAAGAGGCGGCCCGCTGACCGCCAGAGGAATCCGGTATATTTTAAGCGG    698

BSNT_02634___    696 GCTTGTTCAAAAAGCGTCAAGCACTTTACATATCCATCCGCATATGCTTC    745
                     ||||||..|||||||.||..|||||||||||||.||.|||||||||||||
RBAM_015970__    699 GCTTGTAAAAAAAGCATCCGGCACTTTACATATACACCCGCATATGCTTC    748

BSNT_02634___    746 GACATACGTTCGCCACGCATCTGTTAAATGAAGGAGCGGATTTGAGAAGC    795
                     |.||.|||||.||.||.||||||.|.||||||||.||.|||||.||||||
RBAM_015970__    749 GGCACACGTTTGCGACTCATCTGCTGAATGAAGGGGCTGATTTAAGAAGC    798

BSNT_02634___    796 GTTCAAGAACTGCTCGGGCATTCCAATCTGTCTTCTACACAGATATACAC    845
                     ||.||.||.||..|.||.||||||||||||||||||||.|||||||||||
RBAM_015970__    799 GTCCAGGAGCTTTTGGGCCATTCCAATCTGTCTTCTACGCAGATATACAC    848

BSNT_02634___    846 GCACGTTTCGAAGGAAATGTTGAGAAACACATATATGTCTCACCATCCAA    895
                     .||.||.||||||||||||.|||||||||||||||||||.|||||.||.|
RBAM_015970__    849 ACATGTATCGAAGGAAATGCTGAGAAACACATATATGTCCCACCACCCGA    898

BSNT_02634___    896 GAGCATTTAAGAAAAATTAA    915
                     ||||.|||||..||||||||
RBAM_015970__    899 GAGCTTTTAAAGAAAATTAA    918


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.