Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02626 and RBAM_015900
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:30
# Commandline: needle
# -asequence dna-align/BSNT_02626___ylqG.1.9828.seq
# -bsequence dna-align/RBAM_015900___ylqG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02626___ylqG-RBAM_015900___ylqG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02626___ylqG-RBAM_015900___ylqG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02626___ylqG
# 2: RBAM_015900___ylqG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1959
# Identity: 1131/1959 (57.7%)
# Similarity: 1131/1959 (57.7%)
# Gaps: 483/1959 (24.7%)
# Score: 2922.0
#
#
#=======================================
BSNT_02626___ 1 ATGAACATA-----CGAAATGATGTGCAAAAGGCGCTGCAGCACCTTTTC 45
||||||||| ||||| |.|||..||| ||||
RBAM_015900__ 1 ATGAACATAAGCGGCGAAA-----TCCAAGCGGC------------TTTC 33
BSNT_02626___ 46 GGGCGTACAGCCG----------TCCCGCAGGAAACATCAAAA-----GT 80
.| |||||.| ||||.|.|| |.|..|||.| ||
RBAM_015900__ 34 AG----ACAGCTGACGGCGGAAATCCCTCCGG-ACCGGCAAGACGGCGGT 78
BSNT_02626___ 81 AAA-----CGAAGCGCTAAACGGGGAGAAGCGTCTCCTCTTAGGAAAAGT 125
||| || |||||.||.|| ||.||.|||||.||.||
RBAM_015900__ 79 AAAGACAGCG--GCGCTCAAAGG----------CTGCTGTTAGGGAAGGT 116
BSNT_02626___ 126 GCTTCGTTTACTAGGA-GATC--AGCATGCCCTGATCCAAGTCGGCAATC 172
.||.|||||.|| ||| |||| ||| ||.||.||||||.|||||...|
RBAM_015900__ 117 TCTCCGTTTGCT-GGACGATCAAAGC--GCTCTTATCCAAATCGGCGGCC 163
BSNT_02626___ 173 AAACTGTTCAGGGAAAACTTGAAACCCAGCTTCGTCCTCAGGCATACTAT 222
..||..|.||||||||||||||||||...||||||||.|||||.||.||.
RBAM_015900__ 164 GGACGATGCAGGGAAAACTTGAAACCGCCCTTCGTCCGCAGGCGTATTAC 213
BSNT_02626___ 223 TGGTTTTCCTACGAAAAAAAAACGGCAGAGCAAACAGGCCGTCTTCAGG- 271
||||||||.||.||.|||.|..||||.||..||||.|||||.|||||.|
RBAM_015900__ 214 TGGTTTTCTTATGACAAACAGCCGGCGGAAAAAACGGGCCGGCTTCATGT 263
BSNT_02626___ 272 --TCGTTCAAAGCTTTGATCAAAATCCTAAAACCATTCAGGATGCAGCTG 319
|||..||| ||.||...|||.||.||||||.|||||||.||.|| |
RBAM_015900__ 264 CATCGACCAA---TTCGAAGGAAACCCGAAAACCGTTCAGGAAGCGGC-G 309
BSNT_02626___ 320 GCAAG-CTTTTAAATGCCATGTCAGTGAAGACGTCAAACGCAG------- 361
|.||| ||.|||||.||..|.|| .||||||| |||
RBAM_015900__ 310 GGAAGACTGTTAAACGCTCTTTC--------TGTCAAAC-CAGGCCCTGT 350
BSNT_02626___ 362 --CTCT-CATGAT----GA-------------CAGGAGCGATGCTGAAGA 391
|||| || ||| || |||.||| |||.||.||
RBAM_015900__ 351 GTCTCTGCA-GATTGCCGAAACGTTTATGCAGCAGAAGC--TGCCGATGA 397
BSNT_02626___ 392 -GCAAAACACCCGTAACAGAAAATGATATCAAAACAGCT---GTCCGCTG 437
|.||||||.|| |||| |||| .|||||||
RBAM_015900__ 398 CGGAAAACAGCC----------------TCAA---AGCTTGCATCCGCTG 428
BSNT_02626___ 438 GATGGACACGCT----GCCTTCGCAA--GACACAAAAAAAGCAGTTGAAA 481
|...||..|||| |||..|| || | ||||||||.|..||||
RBAM_015900__ 429 GGCTGAATCGCTTCCGGCCGCCG-AATTG-----AAAAAAGCGGCGGAAA 472
BSNT_02626___ 482 CGGTTCTCTTCGCTTTAAAGCGTGATCTTCCCATTCAC-TCCGAGA--TT 528
|..|..|.||.||..|.||.||.||.||.||| .||| |||| || |.
RBAM_015900__ 473 CAATCGTATTTGCGCTGAAACGGGAACTGCCC--GCACATCCG-GAAGTC 519
BSNT_02626___ 529 TTGAATGGTGTTCACGCTGTGAAATCGCCTGTTCCGTTGCATCAGCACGT 578
|||...|...||||.||.||.||||..||.|||||| |.|.| .||.
RBAM_015900__ 520 TTGTCAGCCATTCATGCCGTTAAATATCCGGTTCCG----ACCCG-GCGC 564
BSNT_02626___ 579 ATCC---CAG--CTGCTACAGGCAATCGACCAAAACCCTCAGCAGA--GC 621
.||| ||| |||.|.|||||||||.|.| |..|||.||| | |.
RBAM_015900__ 565 CTCCTCTCAGGACTGTTTCAGGCAATCAATC---AGGCTCCGCA-ATCGG 610
BSNT_02626___ 622 CAAATGA--TGTCAAAGCTAAAGGAAGCAGTT----ACGGTGCTTTTAAA 665
||||.|| ||||...|||.||.|..||.||| ||| |.|||||
RBAM_015900__ 611 CAAAAGAGCTGTCTGTGCTCAAAGCGGCGGTTTCTGACG----TGTTAAA 656
BSNT_02626___ 666 TAGTGAAATCGATGTCCATGCAGAACGGCTAATTGATAAGCTTATTTCTT 715
....||||..|||.|.|||||||||||.||..|..|.||||||
RBAM_015900__ 657 CGCGGAAACGGATCTTCATGCAGAACGTCTCCTGAAGAAGCTT------- 699
BSNT_02626___ 716 TAACCGA--CAATACGAAAGCACCTTCT------CCGGCGAATACAGCTG 757
.|||| |...|||.|.|| |..||| |||| ||||
RBAM_015900__ 700 --GCCGAGGCTGCACGCATGC-CGCTCTCAGAAACCGG--------GCTG 738
BSNT_02626___ 758 ------GAAGCAG-------GGAGCTTAGCA-------CACCAGCTGGCT 787
||||.|| ||| |.|| |||||..|| |
RBAM_015900__ 739 ATGGATGAAGGAGAACGGACGGA----ATCAAAACAATCACCATTTG--T 782
BSNT_02626___ 788 CC--------------CCCGGAA----------AAGCCAGCCT-----GC 808
|| ..||||| |||||||||| .|
RBAM_015900__ 783 CCGAGAGACTCGTGAAAACGGAAAGGCAGTCTCAAGCCAGCCTTCTCCTC 832
BSNT_02626___ 809 CGATTGCAAATCACACAGCAGAACAGGGAA--GCATACAAGAAGAGCTTG 856
|||.|||| |.|||| ||...|||| ||.|..||.||..||
RBAM_015900__ 833 CGAGTGCA---CGCACA----AATCCGGAACTGCCTGAAAAAACGGC--- 872
BSNT_02626___ 857 TTAAAACAG----CAGCAGACATTCCAATTAAAGAAGCCCGCCAGCTGCT 902
||||||| .|| ||| ||||||
RBAM_015900__ 873 --AAAACAGATTATAG-AGA------AATTAA------------------ 895
BSNT_02626___ 903 GGTGAAGCTGACGGAATCTGCTGAAA------AAAACAGTCTCCAAATTG 946
|||| |||.||.|||| |||||.|||.| |
RBAM_015900__ 896 --------TGAC---ATCGGCAGAAAAAACTGAAAACCGTCCC------G 928
BSNT_02626___ 947 TGAAAGAAGCAGC--AAATTGGATTAAAGCGGCTGCTTCATCGGGT---- 990
|.||||.|.|.|| |.|| .||||| |||| ||||| |
RBAM_015900__ 929 TAAAAGTAACGGCGGAGAT--CATTAA---GGCT--TTCAT----TTCTC 967
BSNT_02626___ 991 --GATAGTAAGTCAC-TTG----CAGCTTCAGCTGTTTTACAAGCGGCAC 1033
||.| || || ||| ||| ||.|||||.|.|||...||||
RBAM_015900__ 968 AAGAAA--AA---ACATTGAAAACAG---CACCTGTTCTTCAAAACGCAC 1009
BSNT_02626___ 1034 AAGTCACAGACCAGGAAGCCGAAGTCTTTTT----AAAGGCTGTTCAGCA 1079
|..|.|||||.|||||.|| |.||.||| |||.||.|.|||||
RBAM_015900__ 1010 ATCTGACAGAACAGGAGGC----GGCTGTTTTCGAAAAAGCCGCTCAGC- 1054
BSNT_02626___ 1080 GACAGCACCCCATTTGGCGGATA-AGGCAG------ATGTTCTTT----- 1117
.||||..||| ||.| |.|||| |||.|.|.|
RBAM_015900__ 1055 ----TCACCGAATT-----GAAATATGCAGAAAAACATGATGTATTAAGC 1095
BSNT_02626___ 1118 CTTTCTTATCC--AAAGTGAAAACGGCAATCGGCGCAAGGGACGAGGTTG 1165
|||| |.| |||.|.||||..|.|.|.|||.|..|.||.||..|..
RBAM_015900__ 1096 CTTT----TGCAGAAAATCAAAAAAGGACTGGGCACGCGTGATGAATTAT 1141
BSNT_02626___ 1166 CGTTCATTAAAGCGTTTGAACAAGGAAGCGCAGT---CACATCTGGCGAA 1212
|.|||||||.|||..|||||.||| |||.| | |.||.|.||.|||
RBAM_015900__ 1142 CATTCATTACAGCACTTGAAAAAG---GCGTA-TCTCCTCAGCCGGAGAA 1187
BSNT_02626___ 1213 A-------TG----CAATCCATCAAGCTGGCTCTTTCTGCCTTAAGA-GC 1250
| || ||..||..|||||.| ||.| || ||
RBAM_015900__ 1188 ACAAGCGCTGAAAACAGCCCTCCAAGCCG------TCCG------GACGC 1225
BSNT_02626___ 1251 ATCGCATGAGGTAGCCGAACCAGTCAAACAAGAAGCCGATCAGCTTTTTC 1300
.| ||.||||...||.||.|.||.||||||||.||.||.|.||||.|||
RBAM_015900__ 1226 TT--CAAGAGGCGCCCCAATCCGTTAAACAAGAGGCGGAACCGCTTATTC 1273
BSNT_02626___ 1301 ATAAATTAAATGGCCAGCTTTTCATGCAGCAGGACCATCCATCATACAGC 1350
||||||||||.||||||||.||.||..|||||.|..|.||.||.|..|..
RBAM_015900__ 1274 ATAAATTAAACGGCCAGCTGTTTATTGAGCAGCATAACCCTTCTTTTACG 1323
BSNT_02626___ 1351 CAAATTGTAATGTCATTTCCGATGTTTTCGAA--GTCAGGGGTTCAG--- 1395
||.||.||..|||||||||||.|| |.| |||.|.|..|.||
RBAM_015900__ 1324 CAGATGGTGCTGTCATTTCCGCTG-----GGAGCGTCCGCGTATGAGAAT 1368
BSNT_02626___ 1396 GACATGACTGTTCTGTTTAAAGGAAAGAAAGAAG-CGGATGGAAAGCTTG 1444
|||||.||.|||||.|||||||| |.|.|||||| ||||.|||||.||.|
RBAM_015900__ 1369 GACATCACAGTTCTCTTTAAAGG-ACGGAAGAAGCCGGACGGAAAACTCG 1417
BSNT_02626___ 1445 ATCCTTCCCATTGCCGCCTTTTGTTTTTGCTGCAGCTTGATACACTAAAA 1494
||||.||.||||||.|.||..|||||||||||||.|||||.|||||..||
RBAM_015900__ 1418 ATCCGTCACATTGCAGGCTCCTGTTTTTGCTGCACCTTGAAACACTGCAA 1467
BSNT_02626___ 1495 GAAACCGTCGTTGATTGCTTGGTACAACAAAAAGTCATGACCATTACAAT 1544
||||||||.||.||.|||.||.|.||.|||||.||.|||||||||||..|
RBAM_015900__ 1468 GAAACCGTTGTGGACTGCATGATTCAGCAAAATGTAATGACCATTACGGT 1517
BSNT_02626___ 1545 AGAGACTGATTTCGAGCTGCAGGCTGCGATCGATCCGATGGTGCCCGCGC 1594
.|||||||||||.|||||.|||||.||.|||||.||..|.||.|| .||
RBAM_015900__ 1518 TGAGACTGATTTTGAGCTTCAGGCCGCCATCGACCCTCTCGTACC--GGC 1565
BSNT_02626___ 1595 TTAAACAGGGGC--TAAAGGAAATGGGGTACAGCCTTTCAGGGGTAAACG 1642
||.||.||..|| ||||.||||.|||.|.||||||.|||||.||.|..|
RBAM_015900__ 1566 TTTAAAAGAAGCCGTAAAAGAAACGGGCTTCAGCCTGTCAGGCGTCACGG 1615
BSNT_02626___ 1643 CTAAAAAAAGGGTTCACACCG-AAGA--AAAGGCTTCAATC-----GATC 1684
||||||||.|| |.| ||| |||| |.|| ||.|| ||..
RBAM_015900__ 1616 CTAAAAAACGG---CGC-CCGAAAGACCAGAG----CACTCTTGTGGAAG 1657
BSNT_02626___ 1685 AATATATA-------AC-----AAGTATCAGTGATCAGGAAGTGGATGTG 1722
|.|.|||| || |||.| |||||||||||
RBAM_015900__ 1658 AGTTTATAGAAAAAGACGGCGGAAGAA------------AAGTGGATGTG 1695
BSNT_02626___ 1723 AAAATATGA 1731
|||||||||
RBAM_015900__ 1696 AAAATATGA 1704
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