Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02618 and RBAM_015850

See Amino acid alignment / Visit BSNT_02618 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:29
# Commandline: needle
#    -asequence dna-align/BSNT_02618___rimM.1.9828.seq
#    -bsequence dna-align/RBAM_015850___rimM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02618___rimM-RBAM_015850___rimM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02618___rimM-RBAM_015850___rimM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02618___rimM
# 2: RBAM_015850___rimM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 530
# Identity:     407/530 (76.8%)
# Similarity:   407/530 (76.8%)
# Gaps:          10/530 ( 1.9%)
# Score: 1540.0
# 
#
#=======================================

BSNT_02618___      1 ATGACAAAGCGATGGTTTAACGTAGGCAAAATCGTAAATACCCACGGAAT     50
                     ||||||||..||||||||||.|||||||||||.||||||||||||||.||
RBAM_015850__      1 ATGACAAACAGATGGTTTAATGTAGGCAAAATTGTAAATACCCACGGCAT     50

BSNT_02618___     51 CAAAGGCGAAGTGCGGGTGATTTCAAAAACAGATTTTGCCGAAGAACGAT    100
                     .|||||||||||||||||.|||||.|||||.||.||||||||||||||.|
RBAM_015850__     51 TAAAGGCGAAGTGCGGGTCATTTCTAAAACGGACTTTGCCGAAGAACGGT    100

BSNT_02618___    101 ACAAGCCGGGAAACACGCTGTATTTGTTTATGGACGG----CCGTAACGA    146
                     |||||||.||.||.|||||.|||||||||..|||.||    .||    ||
RBAM_015850__    101 ACAAGCCCGGCAATACGCTCTATTTGTTTGCGGAAGGGGCTGCG----GA    146

BSNT_02618___    147 ACCAGTGGAGGTAACGGTAAACACACATAGACTGCATAAGCAATTTCATC    196
                     .|||.|..|.||||||||||.|.|.||.||.||.||.|||||.|||||.|
RBAM_015850__    147 GCCAATCAAAGTAACGGTAAGCGCCCACAGGCTTCACAAGCAGTTTCACC    196

BSNT_02618___    197 TCCTGCAGTTTAAAGAAAGACAAAACCTAAATGAAGTAGAAGAGCTGAAA    246
                     |.|||||.||.|||||||..|..|..||.||||||||.|||.|.||.|.|
RBAM_015850__    197 TGCTGCAATTCAAAGAAATGCCGAGTCTCAATGAAGTCGAACACCTAAGA    246

BSNT_02618___    247 AACGCAATCATTAAAGTTCCTGAAGAAGAATTAGGAGAGC-TGAATGAGG    295
                     |||....|.||.|||||.|||||||||||.||.||||||| |||| ||.|
RBAM_015850__    247 AACATGGTGATCAAAGTCCCTGAAGAAGACTTGGGAGAGCTTGAA-GAAG    295

BSNT_02618___    296 GTGAATTTTATTTCCACGAAATTATTGGGTGTGAAGTATTTACTGAAGAA    345
                     .||||||||||||.||.||.||.||.||.||.||.||..|..|.|||||.
RBAM_015850__    296 ATGAATTTTATTTTCATGAGATCATCGGCTGCGAGGTTGTGTCAGAAGAC    345

BSNT_02618___    346 GGCGAACTCATCGGAAAGGTCAAAGAAATTTTGACGCCTGGAGCCAATGA    395
                     ||.|||||.|||||.|..||.||.|||||.||||||||.||.||.|||||
RBAM_015850__    346 GGGGAACTGATCGGCACAGTGAAGGAAATCTTGACGCCAGGGGCTAATGA    395

BSNT_02618___    396 CGTTTGGGTCATCGGACGAAAAGGAAAAAAAGACGCACTCATTCCTTACA    445
                     |||.|||||..|.|.|.|||||||.||||||||.||.||||||||.||.|
RBAM_015850__    396 CGTATGGGTGGTTGCAAGAAAAGGCAAAAAAGATGCGCTCATTCCGTATA    445

BSNT_02618___    446 TTGAATCAGTGGTCAAACATATCGATGTCAGGGAAAAGAAAATTGAGATT    495
                     |||..||.|||||.||..||||..||.|.|..||.|||||||||.|||||
RBAM_015850__    446 TTGCTTCTGTGGTAAAGGATATTAATATAAATGAGAAGAAAATTAAGATT    495

BSNT_02618___    496 GAACTCATGGAAGGGTTAATAGACGAATGA    525
                     .|..|.||||||||||||||||||||||||
RBAM_015850__    496 CATGTAATGGAAGGGTTAATAGACGAATGA    525


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