Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02590 and RBAM_015600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:26
# Commandline: needle
# -asequence dna-align/BSNT_02590___prkC.1.9828.seq
# -bsequence dna-align/RBAM_015600___prkC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02590___prkC-RBAM_015600___prkC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02590___prkC-RBAM_015600___prkC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02590___prkC
# 2: RBAM_015600___prkC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1989
# Identity: 1485/1989 (74.7%)
# Similarity: 1485/1989 (74.7%)
# Gaps: 87/1989 ( 4.4%)
# Score: 5506.5
#
#
#=======================================
BSNT_02590___ 1 GTGCTAATCGGCAAGCGGATCAGCGGGCGTTACCAAATTCTCCGCGTTAT 50
|||||||.||||||||||||||||||||||||.||.||.|||||....||
RBAM_015600__ 1 GTGCTAACCGGCAAGCGGATCAGCGGGCGTTATCATATCCTCCGGCCCAT 50
BSNT_02590___ 51 AGGCGGCGGGGGAATGGCCAACGTGTATTTAGCTGAGGATATCATTCTAG 100
.||||||||.||||||||.|||||.|.||||||||||||.||||||||.|
RBAM_015600__ 51 TGGCGGCGGCGGAATGGCAAACGTTTTTTTAGCTGAGGACATCATTCTCG 100
BSNT_02590___ 101 ACCGTGAAGTCGCAATTAAAATCCTGCGGTTTGACTATGCAAATGACAAT 150
|.||||||||||||||||||||.|||||||||||||.||..|||||||.|
RBAM_015600__ 101 AACGTGAAGTCGCAATTAAAATTCTGCGGTTTGACTTTGTGAATGACATT 150
BSNT_02590___ 151 GAATTTATCAGACGTTTCCGCAGAGAAGCCCAATCCGCATCAAGCCTCGA 200
||.||||||||.||||||.|.||||||||.||.||.||||||||||||||
RBAM_015600__ 151 GATTTTATCAGGCGTTTCAGAAGAGAAGCACAGTCGGCATCAAGCCTCGA 200
BSNT_02590___ 201 TCACCCGAATATTGTCAGCATTTACGATTTGGGCGAGGAAGATGATATTT 250
|||.||||||||.|||||.|||||||||.|.||.|||||||..|||||||
RBAM_015600__ 201 TCATCCGAATATCGTCAGTATTTACGATATCGGGGAGGAAGGCGATATTT 250
BSNT_02590___ 251 ATTATATTGTCATGGAATACGTTGAAGGCATGACGCTTAAA-GAATACAT 299
||||.||||||||||||||.||.||||||||||| .||||| ||||||||
RBAM_015600__ 251 ATTACATTGTCATGGAATATGTGGAAGGCATGAC-ATTAAAGGAATACAT 299
BSNT_02590___ 300 AACAGCAAATGGGCCACTTCACCCTAAAGAAGCGCTGAACATCATGGAGC 349
||..|||.|.||.||.|||||.||.||||||||||||..|.|.|||||||
RBAM_015600__ 300 AAACGCACACGGACCGCTTCATCCGAAAGAAGCGCTGTCCGTTATGGAGC 349
BSNT_02590___ 350 AAATAGTCTCAGCCATCGCTCATGCCCATCAAAACCAGATTGTTCACAGA 399
|.||.|||||.||||||||.|||||||||||||||||.||.||.|||.|.
RBAM_015600__ 350 AGATCGTCTCGGCCATCGCCCATGCCCATCAAAACCATATCGTGCACCGG 399
BSNT_02590___ 400 GACATCAAGCCGCATAACATTTTGATTGATCATATGGGAAATATCAAAGT 449
||.||.||.|||||.||.||.|||||.||||||.|.||..|||||||.||
RBAM_015600__ 400 GATATTAAACCGCACAATATATTGATAGATCATTTAGGGCATATCAAGGT 449
BSNT_02590___ 450 AACGGATTTTGGAATTGCGACGGCACTAAGTTCGACCACAATCACCCATA 499
.||||||||.||.||.||.||.||.||.|..||.||.||||||||.||||
RBAM_015600__ 450 GACGGATTTCGGCATCGCCACAGCGCTTACGTCTACGACAATCACACATA 499
BSNT_02590___ 500 CCAATTCAGTTCTGGGCTCGGTCCATTACTTATCACCTGAACAGGCCCGG 549
|.|||||.||.|||||||||||.|||||.||.||.||.||.|||||..|.
RBAM_015600__ 500 CGAATTCTGTGCTGGGCTCGGTTCATTATTTGTCTCCGGAGCAGGCGAGA 549
BSNT_02590___ 550 GGCGGCTTAGCCACAAAGAAATCGGATATTTATGCGCTTGGAATCGTTCT 599
|||||..|.||.||.||.|||||.||||||||.|||||.||.|||||.||
RBAM_015600__ 550 GGCGGTCTGGCAACGAAAAAATCAGATATTTACGCGCTCGGCATCGTGCT 599
BSNT_02590___ 600 ATTTGAGCTTTTAACCGGCCGTATTCCGTTTGATGGAGAGTCAGCAGTCA 649
.||||||||||||||.||....||.||.|||||.|||||.|||||.||||
RBAM_015600__ 600 GTTTGAGCTTTTAACAGGTAAAATCCCTTTTGACGGAGAATCAGCCGTCA 649
BSNT_02590___ 650 GCATCGCCTTGAAGCATCTTCAAGCGGAAACTCCTTCGGCAAAAAGGTGG 699
|.||.||..|.||||||||.|||.|.|||||.|||||.||.|.||.||||
RBAM_015600__ 650 GTATAGCGCTAAAGCATCTGCAAACAGAAACGCCTTCCGCCAGAAAGTGG 699
BSNT_02590___ 700 AATCCATCGGTCCCCCAAAGCGTTGAAAACATCATACTCAAGGCAACTGC 749
||.||.||..|.||.||.|||||.||||||||.||..|.||||||||.||
RBAM_015600__ 700 AACCCTTCCATTCCGCAGAGCGTCGAAAACATTATTTTAAAGGCAACCGC 749
BSNT_02590___ 750 CAAAGATCCTTTTCATCGCTACGAAACGGCTGAAGACATGGAAGCAGACA 799
.|||||.||.|||||.|||||.||||..||.||.|||||||||||.||||
RBAM_015600__ 750 TAAAGACCCGTTTCACCGCTATGAAAGCGCCGAGGACATGGAAGCGGACA 799
BSNT_02590___ 800 TAAAAACAGCTTTTGATGCCGACAGACTCAATGAAAAGAGATTTACGATT 849
|.|.|||.||||||||.||||.|||.||.||||||.|.|.||||.|..|.
RBAM_015600__ 800 TCAGAACGGCTTTTGACGCCGGCAGGCTGAATGAACAAAAATTTTCCGTG 849
BSNT_02590___ 850 CAAGAAGATGAAGAAATGACAAAAGCGATACCTATCATTAAAGATGAAGA 899
||.||.|||||.||||||||||||||.||.||..|.||||..||.|
RBAM_015600__ 850 CAGGATGATGAGGAAATGACAAAAGCCATTCCCGTTATTACTGACG---- 895
BSNT_02590___ 900 ACTCGCTAAAGCTG-----CTGGCGAAAA---------AGAAGCTGAAGT 935
.|||.|||||.| |.||||.||| ||| |.|| |
RBAM_015600__ 896 --GCGCAAAAGCCGCGCCTCAGGCGGAAACGCCGGGGGAGA--CGGA--T 939
BSNT_02590___ 936 GACAA-----------CCGCACAAGAAAACAAAACAAAGAAGAACGGTAA 974
||.|| |||| || ||||.|||| |||||
RBAM_015600__ 940 GATAAGGAACAGCAGCCCGC-CA--AAAAGAAAA--------AACGG--- 975
BSNT_02590___ 975 AAGAAAAAAGTGGCCGTGGGTTTTGCTCACGATATGCCTCGTTT---TTA 1021
||.|||||||||||||||||..|..|.||..||.||| |||
RBAM_015600__ 976 -------AAATGGCCGTGGGTTTTGCTGGCCGTCTGTTTCATTTTCATTA 1018
BSNT_02590___ 1022 TCACAGCTGGAATTCTTGCTGTCACTGTTTTTCCGTCGCTTTTCATGCCT 1071
|..|.|||| |||||||.|||||.||.||||||||..|.||.||||||
RBAM_015600__ 1019 TGGCGGCTG---TTCTTGCGGTCACCGTGTTTCCGTCTTTATTTATGCCT 1065
BSNT_02590___ 1072 AAGGATGTCAAAATACCTGATGTCTCCGGAATGGAATACGAAAAAGCCGC 1121
||.|||||.|...|.||.||.||....||.|||.|.|||||||||||.|.
RBAM_015600__ 1066 AAAGATGTAAGCGTCCCCGACGTACGGGGCATGAAGTACGAAAAAGCGGA 1115
BSNT_02590___ 1122 AGGGCT-CTTGGAAAAAGAA-GGTTTACAGGTTGATTCCGAGTTGTTGGA 1169
||..|| |||| ||||||| ||..|.|.||..|||.|.||..|...|||
RBAM_015600__ 1116 AGCCCTGCTTG--AAAAGAACGGGCTCCGGGCGGATCCTGATATAACGGA 1163
BSNT_02590___ 1170 AATCTCAGATGAAAAAATTGAAGAGGGCCTGATGGTAAAAACGGATCCTA 1219
.||...||||||||||||.|||||||...|.|||||.||||||||.||.|
RBAM_015600__ 1164 CATTGAAGATGAAAAAATAGAAGAGGAATTAATGGTCAAAACGGACCCAA 1213
BSNT_02590___ 1220 AAGCGGATACCACAGTCAAAGAAGGCGCCACGGTCACCCTTTATAAGAGC 1269
||||||...|.||.||.|||||||||.|..|.||.|..||.||.||.|||
RBAM_015600__ 1214 AAGCGGGGTCTACCGTTAAAGAAGGCTCTTCTGTAAAACTGTACAAAAGC 1263
BSNT_02590___ 1270 ACCGGAAAAGCAAAAAC---GGAGATCGGTGATGTGACAGGCCAAACGG- 1315
|.|||||||.|.||||| |..|||| ||.||||.||| ||||
RBAM_015600__ 1264 ATCGGAAAACCGAAAACCCAGCTGATC---GACGTGAAAGG----ACGGC 1306
BSNT_02590___ 1316 ---TCGACCAGGCAAAAAAAGCGTTGAAGGACCAAGGGTTTAAACATGTA 1362
|||.|.|.||||||||||||.|||||||..||||.||.||||||||.
RBAM_015600__ 1307 AGATCGGCGACGCAAAAAAAGCGCTGAAGGAAAAAGGCTTCAAACATGTC 1356
BSNT_02590___ 1363 ACAGTAAATGAAGTGAATGACGAGAAAAATGCGGGCACTGTCATTGACCA 1412
|..||.||.||||.|||.||.||.|...|.||.|||||.||.|||||.||
RBAM_015600__ 1357 AATGTCAAAGAAGAGAACGATGACAGCGAGGCCGGCACCGTAATTGATCA 1406
BSNT_02590___ 1413 AAATCCTTCAGCAGGGACTGAGCTTGTCCCGAGTGAAGATCAAGTCAAAC 1462
.||.||.|||||.||.||.||..|.|||.|.||.||.|||.|||||||.|
RBAM_015600__ 1407 GAACCCGTCAGCCGGCACCGACATGGTCGCAAGCGACGATGAAGTCAATC 1456
BSNT_02590___ 1463 TTACAGTCAGTATCGGACCCGAAGACATTACGCTTAGAGACTTGAAAACC 1512
|.||.|||||..||||.||.|..|||.|||||||.||.|||||.||.||.
RBAM_015600__ 1457 TAACGGTCAGCCTCGGCCCGGCGGACGTTACGCTGAGGGACTTAAAGACT 1506
BSNT_02590___ 1513 TATAGTAAAGAAGCAGCGTCTGGATATCTGGAAGACAACGGATTGAAGCT 1562
||.||.||||||||.||.||.||.|||||.|||||.|||||..||.||||
RBAM_015600__ 1507 TACAGCAAAGAAGCGGCTTCAGGGTATCTTGAAGATAACGGCCTGCAGCT 1556
BSNT_02590___ 1563 TGTAGAAAAAGAAGCATACTCAGATGATGTTCCAGAAGGACAGGTTGTCA 1612
|||.||||||.||||..|.||||||||.||.||.||||||||.||..|.|
RBAM_015600__ 1557 TGTTGAAAAACAAGCCCATTCAGATGACGTGCCGGAAGGACAAGTCATGA 1606
BSNT_02590___ 1613 AACAAAAACCAGCAGCAGGTACGGCAGTAAAGCCGGGAAACGAAGTTGAA 1662
|.|||.|.||.|||||.||.||.||.||.||||||||||...|.||||||
RBAM_015600__ 1607 AGCAAGAGCCGGCAGCCGGCACTGCGGTTAAGCCGGGAAGTAATGTTGAA 1656
BSNT_02590___ 1663 GTGACATTCTCTCTCGGACCAGAGAAAAAACCTGCGAAAACAGTGAAAGA 1712
|||||.|||||.||||||||.||..|||||||.||||||||.||.|||||
RBAM_015600__ 1657 GTGACGTTCTCGCTCGGACCTGAAGAAAAACCGGCGAAAACGGTAAAAGA 1706
BSNT_02590___ 1713 AAAGGTCAAGATCCCCTACGAACCAGAAAATGAAGGGGACGAGCTTCAAG 1762
|||..|||..||.||.||||||||.|||.|||||||||||||||||.|||
RBAM_015600__ 1707 AAAAATCAGCATTCCTTACGAACCCGAACATGAAGGGGACGAGCTTGAAG 1756
BSNT_02590___ 1763 TGCAAATCGCGGTTGACGATGCGGATCACAGCATCTCTGACACTTACGAA 1812
||||||||||..|.||.|||..|||.||||||||||||||.||.||.||.
RBAM_015600__ 1757 TGCAAATCGCCATCGATGATAAGGACCACAGCATCTCTGATACGTATGAC 1806
BSNT_02590___ 1813 GAATTTAAGATAAAAGAGCCGACTGAACGAACGATCGAACTAAAGATTGA 1862
..||||||.||||||||||||||||||..|||.||||||||.||||||||
RBAM_015600__ 1807 TCATTTAAAATAAAAGAGCCGACTGAAAAAACAATCGAACTGAAGATTGA 1856
BSNT_02590___ 1863 ACCCGGCCAAAAAGGGTACTATCAAGTAATGGTAAACAATAAAGTTGTCA 1912
.|..||.||.||.|||||.||||||||.|||||..|..|||||||.||||
RBAM_015600__ 1857 TCAGGGACAGAAGGGGTATTATCAAGTGATGGTCGATCATAAAGTCGTCA 1906
BSNT_02590___ 1913 GCTACAAAACCATTGAGTATCCGAAAGATGAATAA---- 1947
||||||||||.|||||.||.||||||||| |||.|
RBAM_015600__ 1907 GCTACAAAACGATTGAATACCCGAAAGAT-AATGATTGA 1944
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