Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02586 and RBAM_015560

See Amino acid alignment / Visit BSNT_02586 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:25
# Commandline: needle
#    -asequence dna-align/BSNT_02586___fmt.1.9828.seq
#    -bsequence dna-align/RBAM_015560___fmt.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02586___fmt-RBAM_015560___fmt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02586___fmt-RBAM_015560___fmt.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02586___fmt
# 2: RBAM_015560___fmt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 967
# Identity:     734/967 (75.9%)
# Similarity:   734/967 (75.9%)
# Gaps:          26/967 ( 2.7%)
# Score: 2677.0
# 
#
#=======================================

BSNT_02586___      1 ATGACGAGAATCGTATTTATGGGAACGCCGGATTTTTCAGTTCCTGTTTT     50
                     |||||.||.|||||.||||||||||||||.||||||||||||||.||..|
RBAM_015560__      1 ATGACAAGGATCGTTTTTATGGGAACGCCCGATTTTTCAGTTCCCGTCCT     50

BSNT_02586___     51 AAGAACCCTGATTGAGGACGGATATGAAGTAGTGGGGGTCGTCACACAGC    100
                     ..|.||.||.|||||.|||||.||||||||.||.||.|||||.||.||||
RBAM_015560__     51 GCGCACGCTTATTGAAGACGGGTATGAAGTGGTTGGTGTCGTTACGCAGC    100

BSNT_02586___    101 CGGACCGTCCGAAGGGCAGAAAAAAAGTCATGACACCTCCTCCGGTCAAG    150
                     |.|||||.|||||.||||||||||||.|||||||.||.|||||.||.|||
RBAM_015560__    101 CTGACCGCCCGAAAGGCAGAAAAAAAATCATGACGCCCCCTCCTGTTAAG    150

BSNT_02586___    151 GAAGAGGCATTG--CGTCACGGCATCCCGGTTCTTCAGCCGGAAAAAGTC    198
                     |..||.||  ||  |||||||||||.||.||.||||||||.||||||||.
RBAM_015560__    151 GCTGAAGC--TGAACGTCACGGCATTCCCGTGCTTCAGCCCGAAAAAGTA    198

BSNT_02586___    199 A-GATTGACAGAAGAAATTGAGAAAGTGCTGGCA--TTAAAGCCTGACCT    245
                     | |.|.|| |||||||||.||.||||||||  ||  .|.|||||.|||||
RBAM_015560__    199 AGGCTCGA-AGAAGAAATAGAAAAAGTGCT--CAGCCTGAAGCCGGACCT    245

BSNT_02586___    246 GATTGTAACGGCGGCATTCGGACAAATTTTGCCTAAAGAGCTTCTCGACA    295
                     ||||||.|||||||||||||||||.||..||||.||..||.|.||.|||.
RBAM_015560__    246 GATTGTTACGGCGGCATTCGGACAGATCCTGCCCAAGCAGTTGCTGGACG    295

BSNT_02586___    296 GTCCAAAGTACGGCTGCATTAACGTTCACGCATCCCTTTTGCCGGAACTG    345
                     |.||.||.||||||||.||.|||||.|||||.||.||.|||||.|||.|.
RBAM_015560__    296 GCCCGAAATACGGCTGTATCAACGTACACGCGTCACTATTGCCTGAATTA    345

BSNT_02586___    346 CGCGGCGGTGCTCCGATTCATTATTCCATTCTGCAGGGAAAGAAGAAAAC    395
                     .|.|||||.||.|||||.||||||||.|||||.||.||.|||||||||||
RBAM_015560__    346 AGAGGCGGAGCGCCGATACATTATTCGATTCTCCAAGGCAAGAAGAAAAC    395

BSNT_02586___    396 CGGGGTTACCATTATGTATATGGTAGAAAAATTGGATGCGGGCGATATGA    445
                     .||.||.||.||.|||||||||||.|||||..|.||||||||||||||||
RBAM_015560__    396 GGGCGTGACAATCATGTATATGGTTGAAAAGCTTGATGCGGGCGATATGA    445

BSNT_02586___    446 TCTCAAAAGTGGAAGTGGACATTGAAGAAACCGACAATGTCGGAACACTG    495
                     |.||.|||.|.||||||||.|||||.|||||.||.||.|||||.||.||.
RBAM_015560__    446 TTTCGAAAATCGAAGTGGAAATTGATGAAACGGATAACGTCGGCACGCTT    495

BSNT_02586___    496 CACGATAAATTAAGCGCGGCTGGCGCGAAGCTATTGTCAGAAACGGTTCC    545
                     |||||.|||||||||...||.||.||.|||||.||||||||.||.||.||
RBAM_015560__    496 CACGACAAATTAAGCATAGCGGGGGCAAAGCTTTTGTCAGAGACCGTCCC    545

BSNT_02586___    546 AAACGTTATTGCCGGCAGCATTTCACC--TGAAAAGCAGGATGAAGAGAA    593
                     .|||||.|||.||||.|..|||..|||  |.|||  |||||.|||...||
RBAM_015560__    546 GAACGTCATTTCCGGAAATATTAAACCGATCAAA--CAGGACGAATCAAA    593

BSNT_02586___    594 AGCGACATACGCGCCTAACATTAAAAGAGAGCAAGAGCTGCTCGACTGGT    643
                     ||||||.|||||||||||||||||..|.|||||.||||.|.|.||.|||.
RBAM_015560__    594 AGCGACTTACGCGCCTAACATTAAGCGTGAGCAGGAGCGGATTGATTGGG    643

BSNT_02586___    644 CCAGAACGGGCGAAGAGCTTTACAACCAGATCCGCGGCTTAAATCCATGG    693
                     |.|...|.||.||||||.|.||||||||||||.|.||.|||||.||.|||
RBAM_015560__    644 CAAAGCCCGGAGAAGAGATCTACAACCAGATCAGAGGTTTAAACCCTTGG    693

BSNT_02586___    694 CCTGTTGCCTATACGACGCTTAATGGACAAAACTTGAAAGTGTGGGAATC    743
                     |||||.||||||||.||..|.||.||.|||||..|||||||.||||..||
RBAM_015560__    694 CCTGTCGCCTATACAACTTTGAACGGTCAAAATATGAAAGTATGGGCTTC    743

BSNT_02586___    744 CAAAAAAACACCCGCACCAACCAAAGCTGAGCCAGGCACAGTCGT---TG    790
                     ..|||||....|.|||..|||..||||||.|||.||.||||||.|   ..
RBAM_015560__    744 TGAAAAAGTTGCGGCAAAAACTGAAGCTGCGCCCGGAACAGTCATCCGCA    793

BSNT_02586___    791 CGGTTGAAAAGGAAGGGATTATCGTTGCCACAGGTAACGAG-ACGGCTCT    839
                     |||...|||   |.||.|||.||||.||..||||.||| || ||.||.||
RBAM_015560__    794 CGGAGCAAA---ACGGCATTGTCGTCGCATCAGGAAAC-AGCACCGCCCT    839

BSNT_02586___    840 GTTATTAACCGAACTCCAGCCGGCAGGCAAAAAACGAATGAAAGGCGAAG    889
                     .|||.|.||.||.||.||||||||.||.||||||||.|||||.|||||||
RBAM_015560__    840 TTTAATCACAGAGCTGCAGCCGGCGGGAAAAAAACGGATGAAGGGCGAAG    889

BSNT_02586___    890 ACTTTGTGCGAGGCGCTCATGTTGAAG-TCGGTGATGTGTTAGGAGTAAA    938
                     |.|||||..|||||....||| ||.|| .||||||.|||||||||| ||.
RBAM_015560__    890 ATTTTGTAAGAGGCAAAAATG-TGCAGCCCGGTGACGTGTTAGGAG-AAG    937

BSNT_02586___    939 C-AATGAAAAAAACTAG    954
                     | ||||||.||||.||.
RBAM_015560__    938 CAAATGAAGAAAATTAA    954


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02586 and RBAM_015560

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
