Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02531 and RBAM_015150

See Amino acid alignment / Visit BSNT_02531 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:19
# Commandline: needle
#    -asequence dna-align/BSNT_02531___sigE.1.9828.seq
#    -bsequence dna-align/RBAM_015150___sigE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02531___sigE-RBAM_015150___sigE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02531___sigE-RBAM_015150___sigE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02531___sigE
# 2: RBAM_015150___sigE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 720
# Identity:     587/720 (81.5%)
# Similarity:   587/720 (81.5%)
# Gaps:           0/720 ( 0.0%)
# Score: 2403.0
# 
#
#=======================================

BSNT_02531___      1 ATGAAAAAACTGAAATTACGGTTGACGCACCTCTGGTATAAGCTGCTGAT     50
                     |||||||||||.||..|.||..||||..|..|.||||||||...||||||
RBAM_015150__      1 ATGAAAAAACTTAAGCTGCGTCTGACATATTTGTGGTATAAATGGCTGAT     50

BSNT_02531___     51 GAAACTTGGGCTGAAAAGTGATGAAGTCTATTACATAGGCGGGAGTGAAG    100
                     ||||||.||.||||||||.||||||||.|||||||||||.||.||.||.|
RBAM_015150__     51 GAAACTCGGACTGAAAAGCGATGAAGTGTATTACATAGGAGGAAGCGAGG    100

BSNT_02531___    101 CCCTGCCGCCTCCATTATCTAAAGATGAGGAGCAGGTTTTGTTAATGAAG    150
                     |.||||||||.||.||.||||||||.|||||||||||..|.|||.|.|||
RBAM_015150__    101 CGCTGCCGCCGCCTTTGTCTAAAGAAGAGGAGCAGGTGCTCTTATTAAAG    150

BSNT_02531___    151 CTCCCAAACGGCGATCAGGCGGCGCGCGCCATTCTAATTGAACGCAATTT    200
                     ||.||.|.|||.||||||||||||||.|||||.||.|||||..|.||.||
RBAM_015150__    151 CTACCGAGCGGGGATCAGGCGGCGCGGGCCATCCTGATTGAGAGAAACTT    200

BSNT_02531___    201 GCGTCTGGTCGTATATATCGCCCGTAAATTTGAAAATACGGGAATTAATA    250
                     .|||||.|||||.||.||.|||||.|||||.||||||||.||.||.||.|
RBAM_015150__    201 ACGTCTTGTCGTTTACATTGCCCGCAAATTCGAAAATACCGGCATCAACA    250

BSNT_02531___    251 TAGAGGATTTAATCAGCATCGGTACCATCGGACTAATCAAAGCTGTGAAT    300
                     |.|||||.||||||||||||||.|||||.||..|.||||||||.||.||.
RBAM_015150__    251 TCGAGGACTTAATCAGCATCGGCACCATTGGTTTGATCAAAGCGGTAAAC    300

BSNT_02531___    301 ACATTCAATCCAGAAAAGAAAATCAAGCTTGCTACCTATGCCTCCCGGTG    350
                     ||.||.|||||.||||||||||||||.||.||.|||||.||.||.||.||
RBAM_015150__    301 ACGTTTAATCCGGAAAAGAAAATCAAACTCGCCACCTACGCGTCGCGATG    350

BSNT_02531___    351 TATAGAAAATGAAATCCTGATGTATTTAAGAAGAAATAACAAAATCCGTT    400
                     |||.|||||.|||||..|.|||||.||..|..||||.||.||||||||||
RBAM_015150__    351 TATCGAAAACGAAATTTTAATGTACTTGCGCCGAAACAATAAAATCCGTT    400

BSNT_02531___    401 CAGAGGTTTCCTTTGATGAACCGCTTAATATTGATTGGGACGGCAATGAG    450
                     |||||||.|||||||||||||||||.|||||||||||||||||.||.||.
RBAM_015150__    401 CAGAGGTATCCTTTGATGAACCGCTGAATATTGATTGGGACGGAAACGAA    450

BSNT_02531___    451 CTTTTGCTTTCTGATGTGCTCGGCACTGACGATGACATCATCACTAAAGA    500
                     ||..|||||||.||||||||||||||.||.|||||.||.||.||.|||||
RBAM_015150__    451 CTGCTGCTTTCGGATGTGCTCGGCACAGATGATGATATTATTACAAAAGA    500

BSNT_02531___    501 CATAGAAGCTAACGTCGATAAAAAGCTTTTGAAAAAAGCGCTTGAACAGC    550
                     |||.|||||.||.||.||||||||.||||||||||||||||||||.||..
RBAM_015150__    501 CATTGAAGCCAATGTGGATAAAAAACTTTTGAAAAAAGCGCTTGAGCAAT    550

BSNT_02531___    551 TTAATGAGAGAGAAAAGCAAATCATGGAGCTGCGGTTTGGGCTTGTCGGT    600
                     |.||.||.|||||||||||.||.|||||.|||||.||.|||||||||||.
RBAM_015150__    551 TAAACGAAAGAGAAAAGCAGATTATGGAACTGCGTTTCGGGCTTGTCGGA    600

BSNT_02531___    601 GAAGAAGAAAAAACCCAAAAGGATGTAGCGGATATGATGGGGATTTCTCA    650
                     ||||||||||||||.|||||.||||||||.||.||||||||||||||.||
RBAM_015150__    601 GAAGAAGAAAAAACACAAAAAGATGTAGCCGACATGATGGGGATTTCACA    650

BSNT_02531___    651 GTCTTATATTTCGCGGCTTGAGAAAAGAATTATAAAAAGATTGAGAAAAG    700
                     .||||||||.||.|||||.||.||..|.|||||.||||||.|||||||||
RBAM_015150__    651 ATCTTATATCTCCCGGCTCGAAAAGCGGATTATCAAAAGACTGAGAAAAG    700

BSNT_02531___    701 AGTTCAACAAAATGGTGTAA    720
                     ||||.|||||||||||||||
RBAM_015150__    701 AGTTTAACAAAATGGTGTAA    720


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