Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02519 and RBAM_015100

See Amino acid alignment / Visit BSNT_02519 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:18
# Commandline: needle
#    -asequence dna-align/BSNT_02519___divIB.1.9828.seq
#    -bsequence dna-align/RBAM_015100___divIB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02519___divIB-RBAM_015100___divIB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02519___divIB-RBAM_015100___divIB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02519___divIB
# 2: RBAM_015100___divIB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 806
# Identity:     612/806 (75.9%)
# Similarity:   612/806 (75.9%)
# Gaps:          31/806 ( 3.8%)
# Score: 2240.5
# 
#
#=======================================

BSNT_02519___      1 ATGAACCCGGGTCAAGACCGAGAAAAAATCGTTAACATTGAAGAGCGGAT     50
                     .||||||||..|||.||..||||||||||.||.||.||||||||||||||
RBAM_015100__      1 GTGAACCCGAATCATGAAAGAGAAAAAATTGTAAATATTGAAGAGCGGAT     50

BSNT_02519___     51 CCCTAAAATTAAAGAGCAGAGGAAACAAAAGGCAAACCGCCGTCTCATTT    100
                     .||.|||||.|||||||||.||||.|||||.|||||||||||.||.||||
RBAM_015100__     51 TCCGAAAATCAAAGAGCAGCGGAAGCAAAAAGCAAACCGCCGGCTGATTT    100

BSNT_02519___    101 CATTTATTATGCTCTTTTTTATTATGGTGCTGATCATTGTGTACCTGCAA    150
                     ||||.|||.|||||||||||||.||||||||||||||.||||||.||||.
RBAM_015100__    101 CATTCATTGTGCTCTTTTTTATGATGGTGCTGATCATCGTGTACTTGCAG    150

BSNT_02519___    151 ACACCAATCAGTAAAGTATCAACAATCTCTGTTACAGGGAATGAAAATGT    200
                     |..||.|||||.|||||.||..|..||.|.|||.|.||.||.|||||.||
RBAM_015100__    151 ATGCCGATCAGCAAAGTGTCTTCTGTCACCGTTTCCGGAAACGAAAACGT    200

BSNT_02519___    201 ATCAAAAAAGGAAATTATCGACCTTTCCGATATTAACAGCGGAGATACTG    250
                     .||...|||.||.||.|.||..|||||.|||||..|.|.||||.|.||.|
RBAM_015100__    201 GTCTGTAAAAGAGATCAACGCGCTTTCTGATATACATAACGGACAAACCG    250

BSNT_02519___    251 AGTTTTGGAGTTTGGACAAGCAAAAAACAGAAAAGAAGATTCAGCAAAAT    300
                     ||||.||||||.||.|||||.||.||||||||.|.||||||.||||.|||
RBAM_015100__    251 AGTTCTGGAGTCTGAACAAGAAACAAACAGAAGAAAAGATTGAGCAGAAT    300

BSNT_02519___    301 AAATTAGTGAAAAAAGCGGAGA---TCAGCAAATCGCTGCCTAATAAAAT    347
                     ||..|.||||||||.||||| |   |||  |||....|.|||||.|||.|
RBAM_015100__    301 AAGCTGGTGAAAAAGGCGGA-ACTTTCA--AAAGTATTTCCTAACAAAGT    347

BSNT_02519___    348 CAACATTGCA-ATCGAAGAATATAAAGCGATTGCTTATTTAGAAAAAG-A    395
                     ||.|||| || ||.||||||||.||..||||.||.|||.| |.|...| |
RBAM_015100__    348 CAGCATT-CACATTGAAGAATACAAGACGATCGCGTATCT-GCAGCGGCA    395

BSNT_02519___    396 CGATGTGTACTATGAAGTGCTTGAAAACGGCTCAGTTCTGCCAAACGAAG    445
                     .|||||.||.|||||||||||.|||||||||.|.||.|||||.|||||||
RBAM_015100__    396 TGATGTATATTATGAAGTGCTCGAAAACGGCACTGTGCTGCCGAACGAAG    445

BSNT_02519___    446 TAACGCCGGATGATGCCGGACCGATTTTAGTGAATTGGACAAACGCGAAG    495
                     |.|||||||||||.||.||.||||||||.||..|.||||||||||||||.
RBAM_015100__    446 TCACGCCGGATGACGCGGGCCCGATTTTGGTTGACTGGACAAACGCGAAA    495

BSNT_02519___    496 AAGC-GGTCTCAAATGGCCAAGCAGCTCGAT--GCGTT---GTCAAAGTC    539
                     |||| |||| .|||||||..|||||||.|||  ||.||   ||     ||
RBAM_015100__    496 AAGCGGGTC-AAAATGGCGGAGCAGCTTGATAAGCTTTCCGGT-----TC    539

BSNT_02519___    540 GTTAAAACAGTCGATTTCAGAAATTTATTATACGCCTGTAAAAATGGATG    589
                     |.|.||.||.||||||||.|||||.||||||||.||.||||||||||||.
RBAM_015100__    540 GCTTAAGCAATCGATTTCTGAAATCTATTATACACCGGTAAAAATGGATC    589

BSNT_02519___    590 AAAACCGTATTAAGTTGTACATGAACGACGGTTATGTTGTTACGGCATCT    639
                     |..||||.||.|||.||||.|||||||||||.|||||.|||||.||.|||
RBAM_015100__    590 AGGACCGGATCAAGCTGTATATGAACGACGGGTATGTAGTTACCGCTTCT    639

BSNT_02519___    640 ATTAAAACGTTTGCAGACCGAATGAAGACGTATCCTTCTATCATCTCACA    689
                     ||||||||||||||.|.|||.||||||||.|||||.||||||.|.||.||
RBAM_015100__    640 ATTAAAACGTTTGCCGGCCGGATGAAGACCTATCCATCTATCGTTTCCCA    689

BSNT_02519___    690 GCTAAGCAGCAATAAAAAAGGAATCATTCATTTAGAAGTTGCCACCTATT    739
                     |||...|.||...|||||.||.||.||.||.||||||||.||.||.||||
RBAM_015100__    690 GCTGGACGGCGGGAAAAAGGGGATTATCCACTTAGAAGTCGCTACGTATT    739

BSNT_02519___    740 TTGAAGAGTTTGGAAAAAACGATAAA-GCTGC--TAAAAAGGAAGATGAA    786
                     |||||||.|||   ||.||.|.|||| .|.||  .|||||.|||.|||  
RBAM_015100__    740 TTGAAGAATTT---AACAAAGGTAAATCCAGCAAGAAAAAAGAAAATG--    784

BSNT_02519___    787 AATTGA    792
                      |||.|
RBAM_015100__    785 -ATTAA    789


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02519 and RBAM_015100

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
