Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02513 and RBAM_015060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:17
# Commandline: needle
# -asequence dna-align/BSNT_02513___murD.1.9828.seq
# -bsequence dna-align/RBAM_015060___murD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02513___murD-RBAM_015060___murD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02513___murD-RBAM_015060___murD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02513___murD
# 2: RBAM_015060___murD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1380
# Identity: 1093/1380 (79.2%)
# Similarity: 1093/1380 (79.2%)
# Gaps: 48/1380 ( 3.5%)
# Score: 4333.0
#
#
#=======================================
BSNT_02513___ 1 GTGGAAAATGATCAATTTTTACAGAAACAGCATTTTTTAATCCTTGGGCT 50
||||||||.||.|..|||||.||.|||||..|.|||.|..||||.||.||
RBAM_015060__ 1 GTGGAAAACGAACTTTTTTTGCAAAAACAAAACTTTCTGGTCCTCGGACT 50
BSNT_02513___ 51 TGCGAAAAGCGGATATGCGGCGGCCTCCATTCTTCATGAAAAAGGCATTT 100
.||||||||||||||||||||.||.||.|||||||||||||||||||||.
RBAM_015060__ 51 GGCGAAAAGCGGATATGCGGCTGCGTCGATTCTTCATGAAAAAGGCATTA 100
BSNT_02513___ 101 ATGTTGCAGTCAATGA-CCAAAAGCCTTTTGAAGAAAATGAACCGGCACA 149
|.||.|..||.||||| |.||||||| ||||||||.||.|||||.||.||
RBAM_015060__ 101 ACGTCGTCGTGAATGATCAAAAAGCC-TTTGAAGAGAACGAACCTGCCCA 149
BSNT_02513___ 150 AAAGCTTTCTGAAAAAGGAATCGAAGTTGTTTGCGGAGAGCATCCAGTTT 199
||.||||.|.||||.||||||.|||||..|.|||||.||||||||....|
RBAM_015060__ 150 AAGGCTTGCAGAAAGAGGAATTGAAGTCATCTGCGGTGAGCATCCGACGT 199
BSNT_02513___ 200 CTCTGTTCGATCAGCATCAAATCACGATTCTGATCAAAAACCCGGGAATT 249
|.||.||.|||||||||||.||.||.||||||||||||||.||.|||||.
RBAM_015060__ 200 CACTTTTTGATCAGCATCACATTACCATTCTGATCAAAAATCCCGGAATC 249
BSNT_02513___ 250 CCTTATGAAAATATTATGGTTCAGGAAGCGGAGAAAAGAGGTATTCCGGT 299
||.|||||||||||.|||||..||||||||.|.|.||||||.||.|||||
RBAM_015060__ 250 CCGTATGAAAATATCATGGTGGAGGAAGCGCAAAGAAGAGGCATCCCGGT 299
BSNT_02513___ 300 TTGGACGGAAATTGAGCTCGCTTACTACCTGACCAGCGCCAAGTTTATCG 349
.|||||||||||.|||||.||.||.||..|.||||..||.||.||.||||
RBAM_015060__ 300 CTGGACGGAAATCGAGCTTGCGTATTATATCACCAATGCAAAATTCATCG 349
BSNT_02513___ 350 GGATTACCGGATCGAACGGTAAAACGACCACGACAACGCTAATTTACGAA 399
|.|||||.||.||.|||||.|||||.||.|||||.||.||||||||.|||
RBAM_015060__ 350 GCATTACAGGTTCAAACGGGAAAACAACAACGACGACCCTAATTTATGAA 399
BSNT_02513___ 400 ATGCTCAAAGCTGACTCGCAAAAAG-CACTGATTGCCGGAAACATCGGCA 448
|||||.||||||||.||| |.|||| |.|||||.||.||.||.|||||||
RBAM_015060__ 400 ATGCTGAAAGCTGATTCG-ATAAAGACGCTGATCGCAGGGAATATCGGCA 448
BSNT_02513___ 449 CAGTCGCAAGTGAGGTTGCCTATCATGCTGATGGAGATGAATGGATCGTT 498
|.|||||.|||||.||.||.|||||||||||.||.||||||||||||||.
RBAM_015060__ 449 CTGTCGCCAGTGAAGTGGCTTATCATGCTGACGGTGATGAATGGATCGTC 498
BSNT_02513___ 499 ACCGAACTGTCTTCGTTTCAGCTGATGGGAACACACGCTTTCAGACCGGA 548
||.||.||.||||||||.|||||||||||.||.||.||.||||||||.||
RBAM_015060__ 499 ACAGAGCTTTCTTCGTTCCAGCTGATGGGGACTCATGCGTTCAGACCTGA 548
BSNT_02513___ 549 AATCAGCCTGATTTTAAATGTATTTGACGCCCATCTGGATTATCACCATA 598
||||.||||||||||||||||.||.|||||.|||.|||||||.||.||.|
RBAM_015060__ 549 AATCGGCCTGATTTTAAATGTGTTCGACGCTCATTTGGATTACCATCACA 598
BSNT_02513___ 599 CGCGCGAAAACTATGAAAAAGCGAAACAGAAAGTGTACCTTCATCAGACT 648
..||.|||||.|||||||||||.||.|||||.|||||.||||||||
RBAM_015060__ 599 GCCGTGAAAATTATGAAAAAGCCAAGCAGAACGTGTATCTTCATCA---- 644
BSNT_02513___ 649 GCTTCA----GATAAAGCCATTGTCAACCAGGATGATGAAACCGTCGTGC 694
||||.| ||||..|||||.||.||.|||...||||||||.|||||||
RBAM_015060__ 645 GCTTGAGAGTGATACGGCCATCGTGAATCAGAGCGATGAAACAGTCGTGC 694
BSNT_02513___ 695 GTCTTGCTGAAGCCGGAAAAGCCGAAATCGTCCCATTTTCAG-TCAGCAA 743
|.|||||.|||..|||||||||||..|.|||.||.||||||| |||.||
RBAM_015060__ 695 GGCTTGCCGAAAGCGGAAAAGCCGGCACCGTTCCGTTTTCAGTTCACCA- 743
BSNT_02513___ 744 AACGCTTGAACAG------GGCGCATATGTAAAAGACAGTATGATTATGT 787
.||||.| |||||||...|.||||||.|.|||.|.||||
RBAM_015060__ 744 ------GGAACTGTCAAGCGGCGCATTCATTAAAGACGGAATGCTGATGT 787
BSNT_02513___ 788 TTAACGGC---GAAGCCATTCTTCCTCTGGAAGAGGTTGTGCTGCCCGGT 834
| |||| |||||.|||||.|||.|.||.||..|.||.|||||.||.
RBAM_015060__ 788 T---CGGCGATGAAGCGATTCTGCCTGTTGATGACATCGTACTGCCGGGC 834
BSNT_02513___ 835 GCTCATAACCTGGAGAACATTTTAGCAGCTATTGCAGTTGTGAAAACGGC 884
||.||.||..|.||.||.||||||||.|||.|.||.|..|..||||||||
RBAM_015060__ 835 GCGCACAATTTAGAAAATATTTTAGCCGCTGTAGCCGCGGCAAAAACGGC 884
BSNT_02513___ 885 AGGAGCATCCAATGAGGCGGTTAAAAAGGTGCTGACAAGCTTTACTGGTG 934
.||.||.||.|||.|.|||.||.|.||||||||||||||||||||.||||
RBAM_015060__ 885 GGGCGCGTCTAATAAAGCGATTCAGAAGGTGCTGACAAGCTTTACCGGTG 934
BSNT_02513___ 935 TGAAGCACCGCCTCCAATATGTCACAACTG------TGAATGGCCGCAAA 978
|.||.|||||.||.||.||||| ||||| .|||| ||.|||
RBAM_015060__ 935 TCAAACACCGTCTGCAGTATGT---AACTGCGATCCAGAAT---CGTAAA 978
BSNT_02513___ 979 TTTTATAACGACAGTAAAGCAACAAACATTCTGGCGACAAGCAAGGCGCT 1028
||||||||.|||||.|||||.||.||.||||||||.||||||||.|||||
RBAM_015060__ 979 TTTTATAATGACAGCAAAGCGACGAATATTCTGGCCACAAGCAAAGCGCT 1028
BSNT_02513___ 1029 TTCAGCTTTTGATAAG--CCGGTCATTCTGCTTGCGGGCGGACTGGATCG 1076
.||.||.|| ..||| |||||.|||||||||||.|||||||||||.||
RBAM_015060__ 1029 CTCGGCGTT--CAAAGCACCGGTTATTCTGCTTGCAGGCGGACTGGACCG 1076
BSNT_02513___ 1077 CGGAAATGGTTTTGATGACTTGAAACCTTATATGAAGCATGTCAAAGCAG 1126
|||.||.||||||||.|||.|||||||.||||||.|..||||||||||.|
RBAM_015060__ 1077 CGGCAACGGTTTTGACGACCTGAAACCGTATATGGACAATGTCAAAGCGG 1126
BSNT_02513___ 1127 TGCTTACATTTGGCCAGACGGCGCCAAAACTCGAGAAACTCGGCAATGAA 1176
|.||.||.||.||.|||||.|||||.||..|.||.|||||.||||||||.
RBAM_015060__ 1127 TCCTGACGTTCGGACAGACAGCGCCGAAGATAGAAAAACTGGGCAATGAG 1176
BSNT_02513___ 1177 CTGGGAATACAACATGTCAAACGTGTCGATAATGTTGAACAAGCAGTATC 1226
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_015060__ 1177 CTGGGAATACAACATGTCAAACGTGTCGATAATGTTGAACAAGCAGTATC 1226
BSNT_02513___ 1227 TGCGGCGTTTGCGCTCTCAAATGAAGGAGATGTCATCCTGCTGTCACCCG 1276
||||||||||||||||||||||||||||||.||||||||..|||||||||
RBAM_015060__ 1227 TGCGGCGTTTGCGCTCTCAAATGAAGGAGACGTCATCCTCTTGTCACCCG 1276
BSNT_02513___ 1277 CGTGTGCGAGCTGGGATCAATTCAAAACATTTGAAGAACGCGGTGACATG 1326
|||||||.|||||||||||.||||||||||||||||||||||||||||||
RBAM_015060__ 1277 CGTGTGCAAGCTGGGATCAGTTCAAAACATTTGAAGAACGCGGTGACATG 1326
BSNT_02513___ 1327 TTTATAGATGCCGTGCATATGCTTAAGTAA 1356
||||||||||||||||||||||||||||||
RBAM_015060__ 1327 TTTATAGATGCCGTGCATATGCTTAAGTAA 1356
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