Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02496 and RBAM_014920
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:15
# Commandline: needle
# -asequence dna-align/BSNT_02496___ylbM.1.9828.seq
# -bsequence dna-align/RBAM_014920___ylbM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02496___ylbM-RBAM_014920___ylbM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02496___ylbM-RBAM_014920___ylbM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02496___ylbM
# 2: RBAM_014920___ylbM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1330
# Identity: 893/1330 (67.1%)
# Similarity: 893/1330 (67.1%)
# Gaps: 164/1330 (12.3%)
# Score: 2854.0
#
#
#=======================================
BSNT_02496___ 1 ATGAAAGCTGTCGGATTGGTGGTTGAATATAATCCCTTTCATAACGGTCA 50
||||||||.|||||..||||.||||||||||||||||||||||||||.||
RBAM_014920__ 1 ATGAAAGCAGTCGGCCTGGTTGTTGAATATAATCCCTTTCATAACGGACA 50
BSNT_02496___ 51 CCTTTATCATGCCCAAACAGCAAAGCGGCAAACCGGA----TGTGACACG 96
||..||||||||..||..|||||| ...||||.|||| .|.|.|.||
RBAM_014920__ 51 CCGCTATCATGCGGAACAAGCAAA-AATCAAAACGGACAGCAGCGTCGCG 99
BSNT_02496___ 97 GCTGTCGCGGTCATGAGCGGGCATTTTTTACAGCGTGGGGAACCGGCTGT 146
|| .|||||.||||||||.|.||||||.|||||.|||||||||||.|.
RBAM_014920__ 100 GC---GGCGGTGATGAGCGGCCCTTTTTTGCAGCGCGGGGAACCGGCCGC 146
BSNT_02496___ 147 TGTGTCAAAATGGGCCCGAACAAAAATGGCGCTGCAAAGCGGAGTTGATC 196
.||.|||||.||||||||.|||||||||||||||.|||.|||.||.|||.
RBAM_014920__ 147 CGTCTCAAAGTGGGCCCGGACAAAAATGGCGCTGGAAAACGGCGTGGATA 196
BSNT_02496___ 197 TTGTTATTGAGCTGCCTTATCTTTATGCCGTGCAAAAAGCAGACATT-TT 245
|.||.||||||||.||||||.|.||||||||.||||||||.|| ||| ||
RBAM_014920__ 197 TCGTCATTGAGCTCCCTTATATATATGCCGTACAAAAAGCGGA-ATTATT 245
BSNT_02496___ 246 TGCACGCGGCAGTGTTTC-CATCCTGAACGAACTT-GAATGTAAGGC-GC 292
.||.||||||||.||||| |.||.|.|.| |.|| |.|||.| || ||
RBAM_014920__ 246 CGCGCGCGGCAGCGTTTCGCTTCTTCATC--ATTTAGGATGCA--GCAGC 291
BSNT_02496___ 293 -TGTTTTTCGGGAGTGAAAATGGGGATATCAAGCCGTTTTTAGAAAC--- 338
||||||||||.||.|||||.|||...|||.|.||.|||.|.|||.|
RBAM_014920__ 292 TTGTTTTTCGGCAGCGAAAACGGGCGGATCGAACCCTTTATTGAAGCGTC 341
BSNT_02496___ 339 ---AGCACAGCTTATTGGTGAGCATAAACATACATTTGATGACCGAA--- 382
||| |.|.|||..|||...| ||||||.|.|
RBAM_014920__ 342 TGAAGC----------GTTCAGCCGAAAGGAA-----GATGACTGCAGCC 376
BSNT_02496___ 383 ------TTAAAGAAGAACTTAAAACGGGGACGAGTTACCCAGCAGCGGCG 426
|.|||||.||.||.||||.|||....||.||.||.||.||
RBAM_014920__ 377 TGATTCTGAAAGAGGAGCTGAAAAAGGGTCTCAGCTATCCGGCCGC---- 422
BSNT_02496___ 427 GCTAGCGCCTTC---AGCTCCATTTT---GCATACCGAAAGTGC------ 464
|||| || |||| |||| .||||...||||.||
RBAM_014920__ 423 -----CGCC-TCAAAAGCT---TTTTCACACATATTCAAAGGGCGGGACA 463
BSNT_02496___ 465 -ACTTGACTTGTCAAAACCAAATAACATTTTGGGGTACCAGTATGTGA-- 511
.||.||.|||||.||.||.||.||.|||.|.||.|..||.||.||.|
RBAM_014920__ 464 TGCTCGATTTGTCCAAGCCGAACAATATTCTCGGTTTTCACTACGTTAGA 513
BSNT_02496___ 512 -----------CTTCGGTTCTAACCGGGGGATACCCTATGAAACCTTATA 550
||.|||||| |.|||||||.|||||||
RBAM_014920__ 514 GCGATACACACCTCCGGTTC-------------CGCTATGAAGCCTTATA 550
BSNT_02496___ 551 CCACGGCACGCATCTCTTCGGACTATCATGATGCCGATC-TCCCTGAAGG 599
|.||.||..|.|||.||||..|.||.|||||.|||||.| |||| ||
RBAM_014920__ 551 CGACAGCCAGAATCGCTTCCCAATACCATGACGCCGAGCTTCCC----GG 596
BSNT_02496___ 600 CGAAAA---CCACATTGCAAGCGCCACAAGCATCAGAAAAGCGATGACTG 646
.||.|| ||..||.||.|||||.|||||||||.|.||||||.|||
RBAM_014920__ 597 AGATAACAGCCGGATAGCCAGCGCAACAAGCATCCGGAAAGCGCTGA--- 643
BSNT_02496___ 647 GCCAGAATCTCGAA-GCCTGCCTTC-----GTTTTCTCCCTGCTGCATCT 690
.||||....||| |.|.||| .| |.||||||||.|..||.|||
RBAM_014920__ 644 --TAGAAAAAGGAACGGCGGCC-GCAAGGAGCTTTCTCCCGGAAGCGTCT 690
BSNT_02496___ 691 GCACGTGAATTAGCAGCTTACCGCAAATCTTTCGGATTGTGGCATA-CAC 739
||.|||||..|.|..||.|||.|.||.||.|.|||..|.|||||.| |||
RBAM_014920__ 691 GCGCGTGAGCTGGAGGCATACAGAAATTCATACGGCATATGGCACAGCAC 740
BSNT_02496___ 740 CTGAGAGCTACTTTTCTTACTTAAAATACAGCCTTTCA--ACTGTAACGG 787
...||| |||.|||||.||..|||||||||||| ||| |||.|..|.|
RBAM_014920__ 741 GGAAGA-CTATTTTTCATATGTAAAATACAGCC--TCAGCACTCTTTCCG 787
BSNT_02496___ 788 CACAGGAATTACAGC--AAGTATACGAGGTGGAGGAAGGTTTAGAGCACA 835
|..|.||||| .||| || |.||.||.|||||.|||||..|.|||||||
RBAM_014920__ 788 CTGAAGAATT-GAGCCGAA-TCTATGAAGTGGAAGAAGGCCTTGAGCACA 835
BSNT_02496___ 836 GAATTCTTCGTTCGATCAGAAAATCCAGCTCCTATCAGGAATTTATGGAG 885
|||||||.||..|.||||||.||.||.|.|||||||..|||.|.|||||.
RBAM_014920__ 836 GAATTCTGCGCACCATCAGACAAGCCCGATCCTATCGCGAAATGATGGAA 885
BSNT_02496___ 886 CTGCTGAAAACAAAACGCTATACGTGGACAAGGCTCCAGCGGATGAATAC 935
|...|||||||||||||.||.||||||||.|||||.|||||||||||.||
RBAM_014920__ 886 CGATTGAAAACAAAACGATACACGTGGACGAGGCTGCAGCGGATGAACAC 935
BSNT_02496___ 936 ACACATTTTAACCAGAACAAAAAAACAGGATATGCA---------AAAGC 976
.||||||.|.||..|.||.||||||.|.||.||||| |||||
RBAM_014920__ 936 GCACATTCTGACACGGACGAAAAAAGAAGACATGCATCGGCTCTTAAAGC 985
BSNT_02496___ 977 TGCTTGACAACGATAAGGCG--CCGTATATCAGGCTTCTCGGCATGACAA 1024
||| ||| ||| ||.||||||.|.||||||||.|||||.|
RBAM_014920__ 986 --CTT--CAA-------GCGCTCCTTATATCCGTCTTCTCGGAATGACGA 1024
BSNT_02496___ 1025 AAAAAGGACAGGCTTATTTATCCGAAAAGAAAAAAGCACTGTCTGTTCCG 1074
|||||||||||||.||..|.||.|.|||||||||||..||..|.|..||.
RBAM_014920__ 1025 AAAAAGGACAGGCGTACCTGTCGGCAAAGAAAAAAGAGCTTACCGCACCT 1074
BSNT_02496___ 1075 CTTGTCAGCAAACTGTCCTCTTTCTCCCATCCAGCTCTCGATCTGGACGT 1124
||.||||||||.||.||.||||||||.|||||.|||||.|||||||||.|
RBAM_014920__ 1075 CTCGTCAGCAAGCTCTCTTCTTTCTCTCATCCCGCTCTGGATCTGGACAT 1124
BSNT_02496___ 1125 AAAAGCAAGCAGGA----TTTACAGCCTGCCGATAGAAGAGCCGCTGA-- 1168
| |..||.||| |||||||||||||||||.|.||.| ||||
RBAM_014920__ 1125 A----CTGGCGGGACGGGTTTACAGCCTGCCGATAAACGAAC--CTGAAC 1168
BSNT_02496___ 1169 GAACTGAGTTTGACCTGCAGGAATACGGACATGCACCGATTCGATATGAT 1218
|.||...||||||....|||||||....|||.||.|||||.||.||||||
RBAM_014920__ 1169 GCACATTGTTTGAGAAACAGGAATTTTCACAAGCGCCGATCCGCTATGAT 1218
BSNT_02496___ 1219 GAAGATGAACAACACTTTTTAAATGTATAG 1248
|||||.|||.|.|..|||||.||||..||.
RBAM_014920__ 1219 GAAGACGAAAAGCGTTTTTTGAATGCGTAA 1248
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