Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02476 and RBAM_014760
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:14
# Commandline: needle
# -asequence dna-align/BSNT_02476___ctaD.1.9828.seq
# -bsequence dna-align/RBAM_014760___ctaD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02476___ctaD-RBAM_014760___ctaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02476___ctaD-RBAM_014760___ctaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02476___ctaD
# 2: RBAM_014760___ctaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1894
# Identity: 1500/1894 (79.2%)
# Similarity: 1500/1894 (79.2%)
# Gaps: 50/1894 ( 2.6%)
# Score: 5975.5
#
#
#=======================================
BSNT_02476___ 1 ATGTTGAATGCGCTTACAG-----------AAAAGCGGACGCGCGGATCT 39
|||.|||||.||||||||| |||||| |||
RBAM_014760__ 1 ATGATGAATACGCTTACAGGACAGCAAAGAAAAAGC-----------TCT 39
BSNT_02476___ 40 ATGCTTTGGGATTATTTGACGACGGTGGACCATAAAAAAATCGCGATTCT 89
.|||||||||||||||||||||||||.||||||||.||||||||||||.|
RBAM_014760__ 40 TTGCTTTGGGATTATTTGACGACGGTTGACCATAAGAAAATCGCGATTTT 89
BSNT_02476___ 90 TTATTTAGTGGCAGGGGGATTCTTCTTTCTTGTCGGGGGAATTGAAGCGA 139
.|||.|..|.||.||||||||.|||||..|.|||||.|||.||||.||.|
RBAM_014760__ 90 ATATATGATCGCCGGGGGATTTTTCTTCGTCGTCGGCGGACTTGAGGCCA 139
BSNT_02476___ 140 TGTTTATCAGAATTCAG--CTTGCAAAGCCGGAAAATGCGTTTCTCAGTG 187
||.|||||||.|||||| |||| |.|||||..||.|..|||.|..|||
RBAM_014760__ 140 TGCTTATCAGGATTCAGCTCTTG--AGGCCGGGGAACGATTTTATGGGTG 187
BSNT_02476___ 188 CTCAAGCA-TATAATGAAGTAATGACTATGCACGGAACGACGATGATCTT 236
||| |||| |.|||||||.|.|||||.||||||||.|||||.||||||||
RBAM_014760__ 188 CTC-AGCAGTTTAATGAAATTATGACGATGCACGGCACGACAATGATCTT 236
BSNT_02476___ 237 TCTGGCTGCGATGCCGCTCTTATTTGCCTTGATGAATGCGGTTGTGCCTT 286
.|||||.|||||||||||.|||||.|...|||||||.|||||||||||..
RBAM_014760__ 237 CCTGGCGGCGATGCCGCTGTTATTCGGGCTGATGAACGCGGTTGTGCCGC 286
BSNT_02476___ 287 TGCAGATCGGGGCTCGGGACGTTTCGTTTCCATTTTTAAACGCGCTTGGT 336
|.|||||||||||.||.|||||.|||||.||||||.|.||.|||||.||.
RBAM_014760__ 287 TTCAGATCGGGGCGCGTGACGTATCGTTCCCATTTCTGAATGCGCTCGGA 336
BSNT_02476___ 337 TTTTGGCTCTTCTTTTTCGGGGGCATTTTCTTAAATCTAAGCTGGTTTTT 386
||||||||.||.||.|||||.|||||.||.||.|||||.|||||||||||
RBAM_014760__ 337 TTTTGGCTGTTTTTCTTCGGAGGCATCTTTTTGAATCTGAGCTGGTTTTT 386
BSNT_02476___ 387 GGGCGGAGCGCCAGATGCGGGCTGGACGTCATATGCCTCACTTTCGCTTC 436
.||.||.||.||.|||||.|||||||||||.||.||.||.|||.||||..
RBAM_014760__ 387 AGGAGGCGCTCCTGATGCAGGCTGGACGTCGTACGCGTCGCTTGCGCTGA 436
BSNT_02476___ 437 ATTCTAAAGGGCACGGCATAGACTTTTTCGTCCTCGGACTCCAAATATCG 486
||||.||||||||||||||||||||||||||.|||||.||.||||||||.
RBAM_014760__ 437 ATTCGAAAGGGCACGGCATAGACTTTTTCGTGCTCGGCCTGCAAATATCA 486
BSNT_02476___ 487 GGGCTCGGGACGCTGATAGCCGGGATTAACTTTTTGGCCACGATTATCAA 536
||..|.||.||||||||.||.|||||.||||||.|.|||||||||||.||
RBAM_014760__ 487 GGCTTAGGTACGCTGATTGCGGGGATCAACTTTCTCGCCACGATTATTAA 536
BSNT_02476___ 537 CATGAGGGCTCCGGGCATGACGTATATGAGGCTGCCTTTGTTTACATGGA 586
.||||||||.|||||..|||||||||||||.|||||..|||||||.||||
RBAM_014760__ 537 TATGAGGGCGCCGGGTTTGACGTATATGAGACTGCCGCTGTTTACGTGGA 586
BSNT_02476___ 587 CGACATTTGTGGCCTCGGCATTGATTTTGTTCGCGTTTCCGCCGCTTACG 636
|||||||||||||.||||||.|.|||||.|||||.|||||.|||||.||.
RBAM_014760__ 587 CGACATTTGTGGCGTCGGCACTCATTTTATTCGCATTTCCTCCGCTCACC 636
BSNT_02476___ 637 GTTGGATTGGCACTGATGATGCTGGATCGGCTGTTCGGCACCAATTTCTT 686
||.||.|||||.|||||||||||||||||..|||||||.||.||||||||
RBAM_014760__ 637 GTCGGTTTGGCGCTGATGATGCTGGATCGTTTGTTCGGAACGAATTTCTT 686
BSNT_02476___ 687 TAATCCGGAGCTTGGCGGGAATACGGTCATTTGGGAGCATTTATTTTGGA 736
||||||.||..|.|||||.||||||.|.||.|||||||||.|.|||||||
RBAM_014760__ 687 TAATCCTGAATTGGGCGGCAATACGATAATCTGGGAGCATCTGTTTTGGA 736
BSNT_02476___ 737 TCTTTGGCCATCCGGAGGTTTATATCTTAATTTTGCCTGCATTCGGTATT 786
|.||.||.||||||||.||.||.||.||||||.|.||.||.||.||.|||
RBAM_014760__ 737 TTTTCGGGCATCCGGAAGTATACATTTTAATTCTTCCCGCCTTTGGGATT 786
BSNT_02476___ 787 TTTTCAGAGGTCATCCCTGTGTTTGCCAGAAAGCGTTTGTTTGGGTACTC 836
||||||||..||||.||.||.|||||.||.||.|||.||||.||.||.||
RBAM_014760__ 787 TTTTCAGAAATCATTCCCGTATTTGCGAGGAAACGTCTGTTCGGTTATTC 836
BSNT_02476___ 837 ATCAATGGTTTTTGCCATCGTGCTCATCGGCTTTTTGGGCTTTATGGTTT 886
.||.|||||.|||||.||||||||.|||||||||.|.||.||.|||||||
RBAM_014760__ 837 GTCTATGGTCTTTGCGATCGTGCTGATCGGCTTTCTCGGGTTCATGGTTT 886
BSNT_02476___ 887 GGGTGCATCACATGTTTACGACAGGTCTCGGCCCAATTGCAAATGCGATT 936
||||.||.||.|||||||||||.||.|||||.||.||.||.||||||||.
RBAM_014760__ 887 GGGTTCACCATATGTTTACGACGGGACTCGGACCGATCGCTAATGCGATA 936
BSNT_02476___ 937 TTTGCGGTTGCAACAATGGCTATCGCGATTCCGACCGGGATTAAGATTTT 986
|||||||||||.||.|||||.||||||.|.||.||.||.|||||.|||||
RBAM_014760__ 937 TTTGCGGTTGCGACGATGGCGATCGCGGTGCCTACGGGCATTAAAATTTT 986
BSNT_02476___ 987 TAACTGGCTGTTGACGATTTGGGGAGGAAATGTGAAGTATACAACCGCTA 1036
.||||||||.|||||.||.||||||||||||||.||.|..||.||..|||
RBAM_014760__ 987 CAACTGGCTTTTGACCATCTGGGGAGGAAATGTCAAATTCACGACGCCTA 1036
BSNT_02476___ 1037 TGCTGTATGCTGTCTCATTTATTCCATCCTTTGTGCTCGGCGGTGTGACG 1086
||||||||||.|||.|.||||||||.||.||.||.|||||.||.||.|||
RBAM_014760__ 1037 TGCTGTATGCCGTCGCCTTTATTCCTTCTTTCGTACTCGGAGGAGTCACG 1086
BSNT_02476___ 1087 GGAGTCATGCTGGCAGCTGCTGCGGCTGATTATCAGTTTCATGATACGTA 1136
||.|||||||||||.||.||.|||||.|||||||||||.||.||||||||
RBAM_014760__ 1087 GGTGTCATGCTGGCGGCCGCAGCGGCAGATTATCAGTTCCACGATACGTA 1136
BSNT_02476___ 1137 TTTTGTGGTTGCACACTTCCACTACGTCATTATTGGCGGTGTTGTATTCG 1186
||||||.||.||.||.||||||||.||||||||.|||||.|||||.||||
RBAM_014760__ 1137 TTTTGTCGTAGCGCATTTCCACTATGTCATTATCGGCGGCGTTGTGTTCG 1186
BSNT_02476___ 1187 GCCTTTTAGCCGGTGTTCATTTCTGGTGGCCGAAAATGTTCGGTAAAATT 1236
||.|..|.||.||.||.||||||||||||||||||||||||||.||..|.
RBAM_014760__ 1187 GCATCCTGGCGGGGGTGCATTTCTGGTGGCCGAAAATGTTCGGGAAGGTG 1236
BSNT_02476___ 1237 CTGCATGAAACGATGGGGAAAATTTCATTTGTATTGTTTTTTATCGGCTT 1286
||.|||||||||||||||||||||||.||.||.||.|||||||||||.||
RBAM_014760__ 1237 CTTCATGAAACGATGGGGAAAATTTCGTTCGTCTTATTTTTTATCGGGTT 1286
BSNT_02476___ 1287 TCACCTCACGTTTTTCATTCAGCATTTTGTCGGCTTAATGGGGATGCCGC 1336
|||.||.||.||.||||||||||||||..||||.||.|||||.|||||||
RBAM_014760__ 1287 TCATCTTACCTTCTTCATTCAGCATTTCCTCGGTTTGATGGGAATGCCGC 1336
BSNT_02476___ 1337 GCCGGGTTTATACGTTTTTGCCAGGACAGGGTCTGGAAACCGGCAACTTG 1386
|.||.|||||.||.|.|.||||.||.|||||.||.||.|||||||||.||
RBAM_014760__ 1337 GGCGCGTTTACACATATCTGCCCGGCCAGGGGCTTGATACCGGCAACCTG 1386
BSNT_02476___ 1387 ATCAGTACAATTGGGGCGTTTTTTATGGCG---GCAGCTG--TTATTCTT 1431
||||||.||||.||.||||||||.|||||| ||.|||| |||.||.|
RBAM_014760__ 1387 ATCAGTTCAATCGGCGCGTTTTTCATGGCGGGCGCGGCTGCTTTACTCGT 1436
BSNT_02476___ 1432 CTGCTGGTCAATGTCATATGGACATCGGTAAAAGGTGAATATGTAGGTGC 1481
| ||||||.|.||.|..||.||..||||.||..||||.||.||...
RBAM_014760__ 1437 C-----GTCAATATTATTTATACCTCAATAAAGGGGAAATACGTCGGGAA 1481
BSNT_02476___ 1482 TGATCCATGGCATGACGGACGTACGCTGGAATGGACCGTTTCTTCACCGC 1531
.||.||.||||..|||||.||||||||.||||||.|.||||||||.||||
RBAM_014760__ 1482 CGACCCGTGGCTGGACGGTCGTACGCTTGAATGGGCGGTTTCTTCGCCGC 1531
BSNT_02476___ 1532 CGCCGGAGTATAACTTTAAACAGCTTCCTTTTGTCAGAGGACTTGATCCG 1581
|||||||.|||||.||||||||||||||.||||||.|.||||||||.|||
RBAM_014760__ 1532 CGCCGGAATATAATTTTAAACAGCTTCCGTTTGTCCGGGGACTTGACCCG 1581
BSNT_02476___ 1582 CTTTGGATCGAGAAGCAGGCAGGACACAAATCA----ATGACGCCGGCGG 1627
||.|||||.||.||||||||.|| ||||.| |||.||||.||.|
RBAM_014760__ 1582 CTGTGGATTGAAAAGCAGGCCGG----AAATGAAGGGATGGCGCCTGCAG 1627
BSNT_02476___ 1628 AACCGGTTGATGATATTCATATGCCAAACGGCTCAATCCTGCCGCTCATC 1677
|.||.||.||.||.|||||||||||.|||||.||.|||.|||||.|.|||
RBAM_014760__ 1628 AGCCTGTAGAGGACATTCATATGCCGAACGGATCCATCATGCCGTTTATC 1677
BSNT_02476___ 1678 ATTTCCTTCGGCCTTTTTGTCGCAGCGTTCGGGCTGCTGTACAGAAGT-- 1725
||.||.|||||.||.||||||||||||||||||.| |.||.|..|.|
RBAM_014760__ 1678 ATATCTTTCGGGCTGTTTGTCGCAGCGTTCGGGTT--TTTATACCACTCC 1725
BSNT_02476___ 1726 GATTACGCTTGGGGCCTGCCAGTGATCTTTATCGGGCTCGGCATCACATT 1775
|||||..|.|||||.||.||.||.|||||.||.|||||||||||||||||
RBAM_014760__ 1726 GATTATTCATGGGGGCTTCCGGTTATCTTCATAGGGCTCGGCATCACATT 1775
BSNT_02476___ 1776 TATTACGATGCTGCTTCGTTCAGTAATTGATGATCACGGCTATCATATTC 1825
..||||.|||||||||||.||.||..|.||||||.|||||||||||||||
RBAM_014760__ 1776 CTTTACCATGCTGCTTCGCTCTGTGGTCGATGATTACGGCTATCATATTC 1825
BSNT_02476___ 1826 ATAAAGAGGAACTGCCGAACGATGATAAAGGGGTGAAGGCATAA 1869
|.|||||.||.||||||||.||||||||||||||||||||.|||
RBAM_014760__ 1826 ACAAAGAAGATCTGCCGAATGATGATAAAGGGGTGAAGGCGTAA 1869
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