Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02454 and RBAM_014600

See Amino acid alignment / Visit BSNT_02454 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:11
# Commandline: needle
#    -asequence dna-align/BSNT_02454___ylaD.1.9828.seq
#    -bsequence dna-align/RBAM_014600___ylaD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02454___ylaD-RBAM_014600___ylaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02454___ylaD-RBAM_014600___ylaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02454___ylaD
# 2: RBAM_014600___ylaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 328
# Identity:     195/328 (59.5%)
# Similarity:   195/328 (59.5%)
# Gaps:          68/328 (20.7%)
# Score: 548.0
# 
#
#=======================================

BSNT_02454___      1 ATGACCTGCTTTCTAGTAAGAGACCTGCTTCCTCTGTATCTTGAAGGTGA     50
                     |||||.|||..|.||||.|||||..|.||.|||.|.|||.|||||||.||
RBAM_014600__      1 ATGACTTGCCGTTTAGTGAGAGATTTACTCCCTTTATATATTGAAGGCGA     50

BSNT_02454___     51 TTGTAAAAGAGAAACGGAACACGTTA------------TAGAA----GCG     84
                     ||||.|||.|||||||||.|...|||            |.|||    |||
RBAM_014600__     51 TTGTGAAACAGAAACGGAGCGGTTTATTTCCCGCCATCTTGAATCATGCG    100

BSNT_02454___     85 CATTTAAAAATGTGCAGCAGCTGCAGAGACATGTATGACACGATGGCTGA    134
                        .|||    ||||.|.||.|         |.|||.|.|.||||...||
RBAM_014600__    101 ---GTAA----GTGCGGGAGTT---------TATATCATATGATGAAGGA    134

BSNT_02454___    135 GCCATTTGA-ATTGGAAAGCGAACAGGCCGTTGA---GGAGGC-------    173
                     |||..|||| .|.||        |||.||  |||   |.||||       
RBAM_014600__    135 GCCGCTTGACCTCGG--------CAGCCC--TGAGATGAAGGCGCCAGCC    174

BSNT_02454___    174 --TTATCTGCCGGAAGAAGAACTGCGTTTTAAACAGAGGTACTATGGATT    221
                       ||||   .|.|||||||||..|||.|||||..|..||||.||.||...
RBAM_014600__    175 TGTTAT---GCAGAAGAAGAAAGGCGGTTTAAGGAACGGTATTACGGGAA    221

BSNT_02454___    222 ACTGATCATGAAAGCTGCCTGCTGGTTTGGAGCGGCG--GTTGCC---AT    266
                     ||||.|.||.|||||.|||||...|||     |||||  |||..|   ||
RBAM_014600__    222 ACTGCTGATAAAAGCAGCCTGTATGTT-----CGGCGCTGTTTTCTTTAT    266

BSNT_02454___    267 GATGCTGATCATCAAACTGCTGATATAA    294
                     .||||||.||.|.|||||||||||.|||
RBAM_014600__    267 CATGCTGGTCCTTAAACTGCTGATTTAA    294


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