Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02449 and RBAM_014550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:11
# Commandline: needle
# -asequence dna-align/BSNT_02449___nprE.1.9828.seq
# -bsequence dna-align/RBAM_014550___nprE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02449___nprE-RBAM_014550___nprE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02449___nprE-RBAM_014550___nprE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02449___nprE
# 2: RBAM_014550___nprE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1594
# Identity: 1206/1594 (75.7%)
# Similarity: 1206/1594 (75.7%)
# Gaps: 56/1594 ( 3.5%)
# Score: 4446.0
#
#
#=======================================
BSNT_02449___ 1 GTGGGTTTAGGTAAGAAATTGTCTGTTGCTGTCGCTGCTTCGTTTATGAG 50
|||||||||||||||||||||||||||||||||||.|||||.||||||||
RBAM_014550__ 1 GTGGGTTTAGGTAAGAAATTGTCTGTTGCTGTCGCCGCTTCCTTTATGAG 50
BSNT_02449___ 51 TTTATCAATCAGCCTTCCTGGTGTTCAGGCTGCTGAAGGTCATCAGCTTA 100
||||.|.|||||.|||||.|||||||||||.|||||...||.||||||||
RBAM_014550__ 51 TTTAACTATCAGTCTTCCGGGTGTTCAGGCCGCTGAGAATCCTCAGCTTA 100
BSNT_02449___ 101 AAGAGAATCAAACAAATTTCCTCT-CCAAAAACGCGATT-----GCGCAA 144
||||.||.|..||.||.|| |.| ||.|| || ||| |.|||.
RBAM_014550__ 101 AAGAAAACCTGACGAACTT--TGTGCCGAA---GC-ATTCTTTGGTGCAG 144
BSNT_02449___ 145 TCAGAACTCTCTGCACCAAATGACAAGGCTGTCAAGCAGTTTTTGAAAAA 194
||.||..|..||.||...|.||||||.||..|||||||.|..||||||.|
RBAM_014550__ 145 TCTGAGTTGCCTTCAGTCAGTGACAAAGCAATCAAGCAATACTTGAAACA 194
BSNT_02449___ 195 GAACAGCAACATTTTTAAAGGTGACCCTTCCAAAAGGCTGAAGCTTGTTG 244
.|||.||||..|.||.|||||..|||||||..|.||.||||||||..|||
RBAM_014550__ 195 AAACGGCAAAGTCTTCAAAGGCAACCCTTCTGAGAGACTGAAGCTGATTG 244
BSNT_02449___ 245 AAAGCACGACTGATGCCCTTGGATACAAACACTTTCGATATGCGCCTGTC 294
|...||||||.||||..||.||.|||||.|||||.||.||||.|||||||
RBAM_014550__ 245 ACCACACGACCGATGATCTCGGCTACAAGCACTTCCGTTATGTGCCTGTC 294
BSNT_02449___ 295 GTTAACGGAGTGCCAATTAAAGATTCGCAAGTGATCGTTCACGTCGATAA 344
||||||||.|||||..|.|||||.||||||||.||..|||||||||||||
RBAM_014550__ 295 GTTAACGGTGTGCCTGTGAAAGACTCGCAAGTCATTATTCACGTCGATAA 344
BSNT_02449___ 345 ATCCGATAATGTCTATGCGGTCAATGGTGAATTACACAATCAAT-CTGCT 393
||||.|.||||||||||||.|.||.|||||||||.|||| |.|| ||.||
RBAM_014550__ 345 ATCCAACAATGTCTATGCGATTAACGGTGAATTAAACAA-CGATGCTTCT 393
BSNT_02449___ 394 GCAAAAACAGATAACAGCCAAAAAGTCTCTTCTGAAA--AAGCGCTGGCA 441
||.|||||.|..||||||.|||||.|.|||.| ||| |.|||||||..
RBAM_014550__ 394 GCCAAAACGGCAAACAGCAAAAAATTATCTGC--AAATCAGGCGCTGGAT 441
BSNT_02449___ 442 CTCGCTTTCAAAGCTATCGGCAAATCACCAGACGCTGTTTCTAACGGAGC 491
|..|||||.|||||.||||||||||||||.||.||.||.||||||||
RBAM_014550__ 442 CATGCTTTTAAAGCAATCGGCAAATCACCTGAAGCCGTCTCTAACGG--- 488
BSNT_02449___ 492 GGCCAA------AAACAGCAATAAAGCCGAATTGAAAGCGATAGAAACAA 535
||| |||||..||.||||||||..|||||||....|..||||
RBAM_014550__ 489 ---CAACGTTGCAAACAAAAACAAAGCCGAGCTGAAAGCAGCGGCCACAA 535
BSNT_02449___ 536 AGGACGGCAGCTATCGTCTTGCTTACGACGTGACGATTCGCTATGTCGAG 585
|.|||||.|..||.||.||.||.||.||.||.||.||.|||||..||||.
RBAM_014550__ 536 AAGACGGTAAATACCGCCTCGCCTATGATGTAACCATCCGCTACATCGAA 585
BSNT_02449___ 586 CCTGAACCTGCAAACTGGGAAGTCTTAGTTGACGCTGAAACAGGCAGCAT 635
||.|||||.||.|||||||||||....|||||.||.||||||||.|...|
RBAM_014550__ 586 CCGGAACCAGCTAACTGGGAAGTAACCGTTGATGCGGAAACAGGGAAAGT 635
BSNT_02449___ 636 TTTAAAACAGCAAAATAAAGTAGAACATGCCGCCGCCACTGGAAGCGGGA 685
..|.|||.|||||||.|||||.||.|||||.||.||.||.||||..||.|
RBAM_014550__ 636 CCTGAAAAAGCAAAACAAAGTGGAGCATGCAGCTGCAACCGGAACAGGTA 685
BSNT_02449___ 686 CAACTCTAAAGGGCGCAACTGTTCCTTTGAACATCTCTTATGAAGGCGGA 735
|.|||||.||.||...|||.||..|.||.||.||.||||.||||.||||.
RBAM_014550__ 686 CGACTCTTAAAGGAAAAACGGTCTCATTAAATATTTCTTCTGAAAGCGGC 735
BSNT_02449___ 736 AAATATGTTCTAAGAGATCTTTCAAAACCAACAGGCACCCAAATCATCAC 785
||||||||..|..|.||||||||.|||||.||.||.||.|||||.||.||
RBAM_014550__ 736 AAATATGTAATGCGTGATCTTTCTAAACCTACCGGAACGCAAATTATTAC 785
BSNT_02449___ 786 ATATGATTTGCAAAACAGACA----AAGCCGCCTTCCGGGCACGCTTGTC 831
.||.|||.||||||||.|||| || |||.||||||||.||.||.
RBAM_014550__ 786 GTACGATCTGCAAAACCGACAATATAA----CCTGCCGGGCACACTCGTA 831
BSNT_02449___ 832 TCAAGCACAACGAAAACA-TTTACATCTTCATCACAGCGGGCAGCCGTTG 880
||||||||.|| .||.|| ||.|||.||||.||.|||||.||.|||||||
RBAM_014550__ 832 TCAAGCACTAC-CAACCAGTTCACAACTTCTTCTCAGCGCGCTGCCGTTG 880
BSNT_02449___ 881 ACGCACACTATAACCTCGGTAAAGTGTACGATTATTTTTATTCAAAC-TT 929
|.||.||.||.||.|||||.|||||||||||||||||.|| |||.|| ||
RBAM_014550__ 881 ATGCGCATTACAATCTCGGCAAAGTGTACGATTATTTCTA-TCAGACGTT 929
BSNT_02449___ 930 TAAACGAAACAGCTATGATAACAGAGGCAGTAAAATCGTTTCTTCCGTTC 979
||||||.|||||.||.||.||.|.||||.|.||||||||.||||||||||
RBAM_014550__ 930 TAAACGCAACAGTTACGACAATAAAGGCGGCAAAATCGTATCTTCCGTTC 979
BSNT_02449___ 980 ACTACGGCACTCAATACAATAACGCTGCATGGACAGGAGACCAGATGATT 1029
|.|||||||...|||||||||||||.||.||||..||.|||||.||||||
RBAM_014550__ 980 ATTACGGCAGCAAATACAATAACGCGGCCTGGATCGGCGACCAAATGATT 1029
BSNT_02449___ 1030 TACGGTGATGGCGACGGTTCATTCTTCTCTCCGCTTTCCGGCTCATTAGA 1079
||||||||.||.|||||.|||||||||||.||.||||||||.|||.|.||
RBAM_014550__ 1030 TACGGTGACGGTGACGGCTCATTCTTCTCGCCTCTTTCCGGTTCAATGGA 1079
BSNT_02449___ 1080 TGTGACAGCGCATGAAATGACACATGGCGTCACCCAAGAAACAGCCAACT 1129
.||.||.||.||||||||||||||.||.||.||.||.||||||||||||.
RBAM_014550__ 1080 CGTAACGGCCCATGAAATGACACACGGTGTTACACAGGAAACAGCCAACC 1129
BSNT_02449___ 1130 TGATTTATGAAAATCAGCCAGGTGCATTAAACGAGTCTTTCTCTGACGTA 1179
|.|..||||||||||||||.||.||.||||||||.||.||||||||.|||
RBAM_014550__ 1130 TAAACTATGAAAATCAGCCGGGCGCTTTAAACGAATCCTTCTCTGATGTA 1179
BSNT_02449___ 1180 TTCGGGTATTTTAACGATACAGAAGACTGGGACATCGGTGAAGACATTAC 1229
|||||.||.||.||.|||||.||.||||||||.|||||||||||.|||||
RBAM_014550__ 1180 TTCGGATACTTCAATGATACTGAGGACTGGGATATCGGTGAAGATATTAC 1229
BSNT_02449___ 1230 GGTCAGCCAGCCTGCTCTTCGCAGCCTGTCCAACCCTACAAAATACAACC 1279
||||||||||||.|||||.|||||..|.||.|..||.|||||||||...|
RBAM_014550__ 1230 GGTCAGCCAGCCGGCTCTCCGCAGTTTATCTACTCCGACAAAATACGGAC 1279
BSNT_02449___ 1280 AGCCTGACAATTACGCCAATTA-CAGAAACCTTCCAAACACAGATGAAGG 1328
||||.|||.|||||...||||| || |||||||||.|||||.||||..||
RBAM_014550__ 1280 AGCCCGACCATTACAAAAATTATCA-AAACCTTCCGAACACTGATGCCGG 1328
BSNT_02449___ 1329 CGATTATGGCGGTGTACACACAAACAGCGGAATTCCAAACAAAGCCGCTT 1378
|||.||.|||||.||.||.|||||||||||||||||.|||||||||||||
RBAM_014550__ 1329 CGACTACGGCGGCGTGCATACAAACAGCGGAATTCCGAACAAAGCCGCTT 1378
BSNT_02449___ 1379 ACAACACCATCACAAAACTTGGTGTATCTAAATCACAGCAAATCTATTAC 1428
|||||||.||.||.|||.|.||.||....|||.|..||||.||.||.||.
RBAM_014550__ 1379 ACAACACGATTACTAAAATCGGCGTGAAAAAAGCGGAGCAGATTTACTAT 1428
BSNT_02449___ 1429 CGTGCGTTAAC-AACG---TACCTCACGCCTTCTTCCACGTTCAAAGATG 1474
||.|| || |||| ||.|||||.||.||.||.|..||.|||||||
RBAM_014550__ 1429 CGCGC----ACTAACGGTATATCTCACTCCGTCATCAAACTTTAAAGATG 1474
BSNT_02449___ 1475 CCAAGGCAGCTCTCATTCAGTCTGCCCGTGACCTCTACGG--CTCAACTG 1522
|.||.||||||.|.|||||.||.||.||.|||||.||||| ||||| |
RBAM_014550__ 1475 CAAAAGCAGCTTTGATTCAATCAGCGCGGGACCTTTACGGCTCTCAA--G 1522
BSNT_02449___ 1523 ATGCCGCTAAAGTTGAAGCAGCCTGGAATGCTGTTGGATTGTAA 1566
|.||.||.|..||.|||||.|||||||||||.||.||.||||||
RBAM_014550__ 1523 ACGCTGCAAGCGTAGAAGCGGCCTGGAATGCGGTCGGCTTGTAA 1566
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