Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02437 and RBAM_014500

See Amino acid alignment / Visit BSNT_02437 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:10
# Commandline: needle
#    -asequence dna-align/BSNT_02437___yktA.1.9828.seq
#    -bsequence dna-align/RBAM_014500___yktA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02437___yktA-RBAM_014500___yktA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02437___yktA-RBAM_014500___yktA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02437___yktA
# 2: RBAM_014500___yktA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 268
# Identity:     201/268 (75.0%)
# Similarity:   201/268 (75.0%)
# Gaps:           2/268 ( 0.7%)
# Score: 725.0
# 
#
#=======================================

BSNT_02437___      1 ATGGAGTATCAATATCCGATGAATGAAGATTGGACAACCGAAGAAGCAGT     50
                     .||||.||||||||||||||||||||.||.|||||.||.||.||.||.||
RBAM_014500__      1 TTGGAATATCAATATCCGATGAATGAGGACTGGACGACAGAGGAGGCCGT     50

BSNT_02437___     51 GGATGTGATTGCATTTTTCCAGCAGGTTGAGCTTGCATATGAAAAAGGGG    100
                     ||||||.|||||.|||||.||||||||.||....||.|||||||||||.|
RBAM_014500__     51 GGATGTCATTGCTTTTTTTCAGCAGGTGGAAAACGCCTATGAAAAAGGAG    100

BSNT_02437___    101 CGGATCGTGA-AGAACTGCTTAAAGCTTACCGCCGTTTCAAGGAAATTGT    149
                     |.||.||.|| || |||.||.||.||.||||||||.||.||.|||||.||
RBAM_014500__    101 CTGACCGGGACAG-ACTTCTGAATGCGTACCGCCGCTTTAAAGAAATCGT    149

BSNT_02437___    150 ACCGGGGAAGGCCGAGGAAAAAAAGCTATGCGGCGAGTTTGAGGAACAAA    199
                     .||.|||||.||.||.|||||.||..|.|||.||.|.|||||.|...|.|
RBAM_014500__    150 TCCCGGGAAAGCGGAAGAAAAGAAAATCTGCAGCCAATTTGAAGCTGACA    199

BSNT_02437___    200 GTACATATTCTCCTTATCGCACGGTCAAACAGGCGAGAGAATCTGATATC    249
                     |.||.|||||.||.|||||.||.||.||||||||||.|.||||.|||...
RBAM_014500__    200 GCACCTATTCCCCGTATCGGACTGTGAAACAGGCGAAACAATCAGATCAA    249

BSNT_02437___    250 GCGAAGATTAAGATGTAA    267
                     ||||..||.||.|||||.
RBAM_014500__    250 GCGATTATCAAAATGTAG    267


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.