Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02430 and RBAM_014420
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:09
# Commandline: needle
# -asequence dna-align/BSNT_02430___pdhA.1.9828.seq
# -bsequence dna-align/RBAM_014420___pdhA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02430___pdhA-RBAM_014420___pdhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02430___pdhA-RBAM_014420___pdhA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02430___pdhA
# 2: RBAM_014420___pdhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1132
# Identity: 890/1132 (78.6%)
# Similarity: 890/1132 (78.6%)
# Gaps: 32/1132 ( 2.8%)
# Score: 3470.5
#
#
#=======================================
BSNT_02430___ 1 ATGGCTGCAAAAACGAAAAAAGCTATCGTTGACAGTAAGAAGCAATTTGA 50
|||||||||||.||.||||...|.||.|||||.||.||.||.||||||||
RBAM_014420__ 1 ATGGCTGCAAAGACAAAAACTTCAATTGTTGATAGCAAAAAACAATTTGA 50
BSNT_02430___ 51 TGCCATTAAAAAGCAGTTCGAAACGTTCCAAATTTTAAATGAAAAGGGAG 100
|||.|||.|.||||||||.||||||||||||||||||||||...|.||||
RBAM_014420__ 51 TGCTATTCATAAGCAGTTTGAAACGTTCCAAATTTTAAATGCTGAAGGAG 100
BSNT_02430___ 101 AAGTCGTGAATGAAGCGGCGATGCCTGATTTAACTGATGATCAATTAAAA 150
|||||||.|||.|||..||.|||||||||.|..|.||||||||.|||||.
RBAM_014420__ 101 AAGTCGTAAATAAAGACGCAATGCCTGATCTTTCAGATGATCAGTTAAAG 150
BSNT_02430___ 151 GAGCTAATGCGCCGCATG--GTATTTACGCGTGTGCTTGACCAACGCTC- 197
||..|||||.|..|.||| ||||.|.|||.|.| |.|||||.||.||
RBAM_014420__ 151 GAATTAATGAGAAGAATGGTGTATATCCGCATTT--TAGACCAGCGTTCA 198
BSNT_02430___ 198 -TATCTCATTAAACCGTCAAGGACGTCTCGGATTTTACGCTCCTACTGCG 246
|.||||.|| .|||||||||||||.|.||.||.||.||.||.||.|||
RBAM_014420__ 199 ATTTCTCTTT--CCCGTCAAGGACGTTTAGGTTTCTATGCACCGACAGCG 246
BSNT_02430___ 247 GGTCAAGAAGCTTCTCAGATTGCAACGCATTTCGCGCTTGAAAAAGAAGA 296
||.||.|||||||||||.||||||.|.||.||||||||||||.|.||.||
RBAM_014420__ 247 GGCCAGGAAGCTTCTCAAATTGCATCACACTTCGCGCTTGAACAGGACGA 296
BSNT_02430___ 297 CTTTGTTCTTCCTGGATACCGTGATGTGCCTCAGTTAATTTGGCACGGCC 346
||||.|.|||||.||.||.|||||.||.||||||.|.|||||||||||.|
RBAM_014420__ 297 CTTTATCCTTCCGGGTTATCGTGACGTTCCTCAGCTGATTTGGCACGGTC 346
BSNT_02430___ 347 TTCCATTATATCAAGCGTTTCTTTTCTCTCGCGGACATTTCAGAGGAAAC 396
||||.|||.||||.||.||.||.|||||..|.||.|||||.|.|||.||.
RBAM_014420__ 347 TTCCTTTACATCAGGCATTCCTGTTCTCAAGAGGCCATTTTAAAGGTAAT 396
BSNT_02430___ 397 CAAATGCCTGATGATGTGAATGCCCTTTCTCCACAAATCATTATCGGTGC 446
||.||||||||.|..||.|||||..|.||.||.|||||.|||||.|||||
RBAM_014420__ 397 CAGATGCCTGAGGGAGTAAATGCTTTATCACCTCAAATTATTATAGGTGC 446
BSNT_02430___ 447 TCAATACATTCAAACGGCCGGTGTTGCGCTAGGTATTAAAAAACGCGGTA 496
||||...||.|||||.||.|||||.||..|||||.|||||||.|||||||
RBAM_014420__ 447 TCAAATTATCCAAACCGCAGGTGTAGCTTTAGGTCTTAAAAAGCGCGGTA 496
BSNT_02430___ 497 AGAAAGCTGTCGCAATCACTTACACTGGTGACGGCGGAGCTTCTCAAGGG 546
|.|||||.||.||.||.||||||||||||||||||||||||||||||||.
RBAM_014420__ 497 AAAAAGCGGTAGCTATTACTTACACTGGTGACGGCGGAGCTTCTCAAGGT 546
BSNT_02430___ 547 GACTTCTACGAAGGAATTAACTTTGCCGGAGCTTATAAAGCACCTGCAAT 596
||||||||.||||||||.||||||||||||||.|.||||||.||.||.||
RBAM_014420__ 547 GACTTCTATGAAGGAATGAACTTTGCCGGAGCATTTAAAGCGCCAGCGAT 596
BSNT_02430___ 597 CTTCGTGGTACAAAACAACCGTTACGCGATTTCAACTCCTGTTGAAAAAC 646
||||||.||.||.||.|||||.||.|||||||||||||||||.|||||.|
RBAM_014420__ 597 CTTCGTTGTTCAGAATAACCGCTATGCGATTTCAACTCCTGTAGAAAAGC 646
BSNT_02430___ 647 AATCTGCAGCTGAAACAATTGCACAAAAAGCTGTAGCTGCCGGTATTGTC 696
||||..|.||..|.||||||||.||||||||.||.||.|.|||||||...
RBAM_014420__ 647 AATCATCCGCACAGACAATTGCCCAAAAAGCAGTTGCCGTCGGTATTACA 696
BSNT_02430___ 697 GGCGTACAAGTAGACGGAATGGATCCGCTTGCTGTATACGCAGCAACTGC 746
||.||.||||||||||||||||||.|.|||||.||.|||||.|||||.||
RBAM_014420__ 697 GGTGTTCAAGTAGACGGAATGGATGCACTTGCCGTTTACGCTGCAACCGC 746
BSNT_02430___ 747 TGAAGCACGCGAGCGCGCAATCAACGGCGAAGGTCCAACACTAATTGAAA 796
.|||||||||.||||||||||.|||||.||||||||.||.||.|||||||
RBAM_014420__ 747 AGAAGCACGCCAGCGCGCAATTAACGGTGAAGGTCCGACTCTGATTGAAA 796
BSNT_02430___ 797 CACTTACATTCCGTTATGGCCCGCACACAATGGCTGGTGACGATCCTACT 846
|.||||||||||||||.||.||.||.||||||.|.|||||||||||.|||
RBAM_014420__ 797 CTCTTACATTCCGTTACGGACCTCATACAATGTCCGGTGACGATCCGACT 846
BSNT_02430___ 847 AAATATCGTACAAAAGAAATCGAAAATGAGTGGGAACAAAAAGATCCGCT 896
|||||||||||.||||||||.||||||||.|||||.||||||||.|||||
RBAM_014420__ 847 AAATATCGTACGAAAGAAATAGAAAATGAATGGGAGCAAAAAGACCCGCT 896
BSNT_02430___ 897 TGTACGTTTCCGTGCGTTCCTTGAAAACAAAGGCTTATGGTCTGAAGAAG 946
.|||||||||||...||||.|.|||||||||||..|||||||||||||||
RBAM_014420__ 897 CGTACGTTTCCGCAAGTTCTTGGAAAACAAAGGACTATGGTCTGAAGAAG 946
BSNT_02430___ 947 AAGAAGCA-AAAGTGATTGAGGATGCGAAAGAAGAAATTAAGCAAGCGAT 995
||| ||.| |||||||||||..|.||.|||||||||||.||.|||||.||
RBAM_014420__ 947 AAG-AGAACAAAGTGATTGAACAGGCCAAAGAAGAAATCAAACAAGCTAT 995
BSNT_02430___ 996 CAAAAAAGCTGATGCTGAACCGAAGCAAAAAGTAA-----CTGATTTAAT 1040
||||||.|||||.|..|||.|.||.|..||||||| ||||| |
RBAM_014420__ 996 CAAAAAGGCTGACGGCGAATCAAAACCGAAAGTAACAGAGCTGAT----T 1041
BSNT_02430___ 1041 GAAAATCATGTACGAAAAAATGCC-----TCACAACCTTG-AGGAGCAAT 1084
||.||| ||||..|||.| ||| || |.|||| |.||.|||.
RBAM_014420__ 1042 GAGAAT-ATGTTTGAAGA---GCCGACGTTC---AACTTGAAAGAACAAC 1084
BSNT_02430___ 1085 TTGAAATTTATACACAGAAGGAGTCGAAGTAA 1116
||||||||||.|.|..||||||||||||||||
RBAM_014420__ 1085 TTGAAATTTACAAAGCGAAGGAGTCGAAGTAA 1116
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